Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0451 and trxC overlap by 18 nucleotides trxC and fkbP-1 are separated by 174 nucleotides fkbP-1 and SO0454 overlap by 4 nucleotides SO0454 and SO0455 are separated by 42 nucleotides
SO0451: SO0451 - hypothetical protein (NCBI ptt file), at 478,775 to 478,927
SO0451
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
SO0453: fkbP-1 - peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file), at 479,507 to 479,842
fkbP-1
SO0454: SO0454 - conserved hypothetical protein (NCBI ptt file), at 479,839 to 480,261
SO0454
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 478.931 kb on + strand at 478.939 kb on - strand at 478.947 kb on - strand at 478.949 kb on + strand at 479.063 kb on - strand, within trxC at 479.182 kb on - strand, within trxC at 479.296 kb on + strand at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand at 479.569 kb on + strand, within fkbP-1 at 479.610 kb on - strand, within fkbP-1 at 479.614 kb on + strand, within fkbP-1 at 479.622 kb on - strand, within fkbP-1 at 479.668 kb on - strand, within fkbP-1 at 479.687 kb on + strand, within fkbP-1 at 479.729 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.749 kb on + strand, within fkbP-1 at 479.883 kb on - strand, within SO0454 at 479.888 kb on + strand, within SO0454 at 479.921 kb on - strand, within SO0454 at 479.931 kb on + strand, within SO0454 at 479.941 kb on - strand, within SO0454 at 479.981 kb on - strand, within SO0454 at 480.011 kb on + strand, within SO0454 at 480.120 kb on - strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.137 kb on + strand, within SO0454 at 480.226 kb on + strand at 480.309 kb on - strand at 480.347 kb on - strand at 480.364 kb on + strand at 480.367 kb on - strand at 480.372 kb on - strand at 480.518 kb on + strand, within SO0455 at 480.526 kb on - strand, within SO0455 at 480.810 kb on + strand, within SO0455 at 480.871 kb on + strand, within SO0455 at 480.903 kb on + strand, within SO0455 at 480.911 kb on - strand, within SO0455 at 480.968 kb on - strand, within SO0455 at 481.015 kb on - strand, within SO0455 at 481.148 kb on - strand, within SO0455 at 481.227 kb on + strand, within SO0455 at 481.235 kb on - strand, within SO0455 at 481.244 kb on + strand, within SO0455 at 481.252 kb on - strand, within SO0455
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 478,931 + -2.8 478,939 - -1.1 478,947 - -1.7 478,949 + -0.8 479,063 - trxC SO0452 0.36 +0.9 479,182 - trxC SO0452 0.64 -0.2 479,296 + -0.6 479,304 + +1.3 479,396 + +0.4 479,415 - -0.0 479,462 - +1.2 479,569 + fkbP-1 SO0453 0.18 +0.4 479,610 - fkbP-1 SO0453 0.31 -0.5 479,614 + fkbP-1 SO0453 0.32 -0.2 479,622 - fkbP-1 SO0453 0.34 +1.5 479,668 - fkbP-1 SO0453 0.48 +1.3 479,687 + fkbP-1 SO0453 0.54 -1.3 479,729 + fkbP-1 SO0453 0.66 -0.4 479,744 + fkbP-1 SO0453 0.71 -0.4 479,744 + fkbP-1 SO0453 0.71 +0.1 479,749 + fkbP-1 SO0453 0.72 +1.0 479,883 - SO0454 0.10 -1.2 479,888 + SO0454 0.12 +2.4 479,921 - SO0454 0.19 +0.9 479,931 + SO0454 0.22 +0.6 479,941 - SO0454 0.24 -2.3 479,981 - SO0454 0.34 +1.0 480,011 + SO0454 0.41 +1.1 480,120 - SO0454 0.66 +1.6 480,130 + SO0454 0.69 -1.0 480,130 + SO0454 0.69 -0.5 480,130 + SO0454 0.69 +0.6 480,130 + SO0454 0.69 +1.2 480,137 + SO0454 0.70 +0.6 480,226 + -1.6 480,309 - -0.8 480,347 - -2.9 480,364 + +0.9 480,367 - +0.6 480,372 - +0.2 480,518 + SO0455 0.11 -2.5 480,526 - SO0455 0.11 -1.2 480,810 + SO0455 0.25 +1.0 480,871 + SO0455 0.28 +1.0 480,903 + SO0455 0.29 -0.6 480,911 - SO0455 0.30 +0.7 480,968 - SO0455 0.33 -0.8 481,015 - SO0455 0.35 -0.7 481,148 - SO0455 0.41 -1.0 481,227 + SO0455 0.45 -0.6 481,235 - SO0455 0.46 -1.8 481,244 + SO0455 0.46 +0.0 481,252 - SO0455 0.47 -3.5
Or see this region's nucleotide sequence