Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0437 and SO0438 are separated by 75 nucleotides SO0438 and SO0439 overlap by 4 nucleotides SO0439 and SO0440 are separated by 97 nucleotides
SO0437: SO0437 - sensory box protein (NCBI ptt file), at 461,211 to 463,781
SO0437
SO0438: SO0438 - oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file), at 463,857 to 464,660
SO0438
SO0439: SO0439 - hypothetical protein (NCBI ptt file), at 464,657 to 464,932
SO0439
SO0440: SO0440 - conserved hypothetical protein (NCBI ptt file), at 465,030 to 468,251
SO0440
Position (kb) 463
464
465 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 462.858 kb on - strand, within SO0437 at 462.888 kb on - strand, within SO0437 at 463.002 kb on + strand, within SO0437 at 463.029 kb on - strand, within SO0437 at 463.098 kb on - strand, within SO0437 at 463.171 kb on - strand, within SO0437 at 463.183 kb on + strand, within SO0437 at 463.191 kb on - strand, within SO0437 at 463.430 kb on + strand, within SO0437 at 463.475 kb on + strand, within SO0437 at 463.577 kb on + strand at 463.577 kb on + strand at 463.774 kb on + strand at 463.775 kb on - strand at 463.791 kb on + strand at 463.810 kb on + strand at 463.990 kb on + strand, within SO0438 at 463.998 kb on - strand, within SO0438 at 464.053 kb on + strand, within SO0438 at 464.149 kb on + strand, within SO0438 at 464.258 kb on + strand, within SO0438 at 464.260 kb on + strand, within SO0438 at 464.291 kb on + strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.299 kb on - strand, within SO0438 at 464.456 kb on + strand, within SO0438 at 464.481 kb on + strand, within SO0438 at 464.511 kb on - strand, within SO0438 at 464.593 kb on + strand at 464.601 kb on - strand at 464.601 kb on - strand at 464.646 kb on + strand at 464.914 kb on + strand at 464.916 kb on + strand at 464.946 kb on + strand at 465.059 kb on - strand at 465.082 kb on - strand at 465.107 kb on + strand at 465.107 kb on + strand at 465.108 kb on + strand at 465.108 kb on + strand at 465.116 kb on - strand at 465.116 kb on - strand at 465.175 kb on + strand at 465.228 kb on - strand at 465.273 kb on - strand at 465.316 kb on - strand at 465.507 kb on + strand, within SO0440 at 465.549 kb on + strand, within SO0440 at 465.649 kb on - strand, within SO0440
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 462,858 - SO0437 0.64 +0.4 462,888 - SO0437 0.65 +1.4 463,002 + SO0437 0.70 -0.2 463,029 - SO0437 0.71 -2.1 463,098 - SO0437 0.73 -0.8 463,171 - SO0437 0.76 +1.7 463,183 + SO0437 0.77 +1.6 463,191 - SO0437 0.77 +1.1 463,430 + SO0437 0.86 -1.1 463,475 + SO0437 0.88 -1.0 463,577 + -1.0 463,577 + -3.3 463,774 + -0.4 463,775 - +0.4 463,791 + +1.3 463,810 + +0.3 463,990 + SO0438 0.17 -0.7 463,998 - SO0438 0.18 -0.4 464,053 + SO0438 0.24 -1.1 464,149 + SO0438 0.36 +2.6 464,258 + SO0438 0.50 +0.9 464,260 + SO0438 0.50 -0.5 464,291 + SO0438 0.54 +0.7 464,299 - SO0438 0.55 +1.6 464,299 - SO0438 0.55 -0.4 464,299 - SO0438 0.55 +1.0 464,299 - SO0438 0.55 +0.2 464,456 + SO0438 0.75 +1.3 464,481 + SO0438 0.78 +0.9 464,511 - SO0438 0.81 +1.8 464,593 + -0.3 464,601 - +0.2 464,601 - +0.2 464,646 + +1.2 464,914 + -1.0 464,916 + -1.2 464,946 + -2.6 465,059 - -1.9 465,082 - -0.5 465,107 + +0.5 465,107 + +1.9 465,108 + +0.3 465,108 + +0.4 465,116 - -1.7 465,116 - -0.3 465,175 + +0.8 465,228 - -0.6 465,273 - +1.5 465,316 - +0.4 465,507 + SO0440 0.15 +0.8 465,549 + SO0440 0.16 -2.0 465,649 - SO0440 0.19 +0.0
Or see this region's nucleotide sequence