Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0330 and SO0331 overlap by 1 nucleotides SO0331 and SO0332 are separated by 40 nucleotides
SO0330: SO0330 - conserved hypothetical protein (NCBI ptt file), at 332,721 to 334,175
SO0330
SO0331: SO0331 - conserved hypothetical protein (NCBI ptt file), at 334,175 to 334,480
SO0331
SO0332: SO0332 - hypothetical kinase (NCBI ptt file), at 334,521 to 335,558
SO0332
Position (kb) 334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 333.229 kb on + strand, within SO0330 at 333.237 kb on - strand, within SO0330 at 333.331 kb on - strand, within SO0330 at 333.438 kb on + strand, within SO0330 at 333.444 kb on - strand, within SO0330 at 333.508 kb on - strand, within SO0330 at 333.611 kb on + strand, within SO0330 at 333.614 kb on + strand, within SO0330 at 333.639 kb on - strand, within SO0330 at 333.651 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.673 kb on + strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.681 kb on - strand, within SO0330 at 333.683 kb on + strand, within SO0330 at 333.686 kb on - strand, within SO0330 at 333.716 kb on - strand, within SO0330 at 333.718 kb on - strand, within SO0330 at 333.768 kb on - strand, within SO0330 at 333.768 kb on - strand, within SO0330 at 333.934 kb on + strand, within SO0330 at 333.934 kb on + strand, within SO0330 at 333.988 kb on - strand, within SO0330 at 334.096 kb on - strand at 334.227 kb on + strand, within SO0331 at 334.227 kb on + strand, within SO0331 at 334.227 kb on + strand, within SO0331 at 334.228 kb on - strand, within SO0331 at 334.235 kb on - strand, within SO0331 at 334.428 kb on - strand, within SO0331 at 334.462 kb on + strand at 334.470 kb on - strand at 334.542 kb on - strand at 334.542 kb on - strand at 334.542 kb on - strand at 334.550 kb on - strand at 334.606 kb on - strand at 334.641 kb on - strand, within SO0332 at 334.641 kb on - strand, within SO0332 at 334.657 kb on + strand, within SO0332 at 334.713 kb on + strand, within SO0332 at 334.713 kb on + strand, within SO0332 at 334.834 kb on - strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.836 kb on + strand, within SO0332 at 334.842 kb on + strand, within SO0332 at 334.843 kb on + strand, within SO0332 at 334.844 kb on - strand, within SO0332 at 334.844 kb on - strand, within SO0332 at 334.851 kb on - strand, within SO0332 at 334.851 kb on - strand, within SO0332 at 334.929 kb on - strand, within SO0332 at 334.967 kb on + strand, within SO0332 at 335.004 kb on - strand, within SO0332 at 335.044 kb on + strand, within SO0332 at 335.044 kb on + strand, within SO0332 at 335.062 kb on - strand, within SO0332 at 335.062 kb on - strand, within SO0332 at 335.109 kb on + strand, within SO0332 at 335.120 kb on + strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.128 kb on - strand, within SO0332 at 335.146 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.369 kb on + strand, within SO0332 at 335.377 kb on - strand, within SO0332 at 335.377 kb on - strand, within SO0332 at 335.405 kb on - strand, within SO0332 at 335.425 kb on - strand, within SO0332
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 333,229 + SO0330 0.35 +1.3 333,237 - SO0330 0.35 -2.9 333,331 - SO0330 0.42 +0.3 333,438 + SO0330 0.49 -0.7 333,444 - SO0330 0.50 -2.1 333,508 - SO0330 0.54 +1.0 333,611 + SO0330 0.61 +1.7 333,614 + SO0330 0.61 -0.4 333,639 - SO0330 0.63 +0.1 333,651 + SO0330 0.64 +0.6 333,673 + SO0330 0.65 +0.3 333,673 + SO0330 0.65 -1.1 333,673 + SO0330 0.65 -0.8 333,673 + SO0330 0.65 +0.5 333,681 - SO0330 0.66 -0.5 333,681 - SO0330 0.66 +0.1 333,681 - SO0330 0.66 -0.9 333,683 + SO0330 0.66 +0.7 333,686 - SO0330 0.66 -0.6 333,716 - SO0330 0.68 +1.1 333,718 - SO0330 0.69 +0.9 333,768 - SO0330 0.72 -2.2 333,768 - SO0330 0.72 +2.2 333,934 + SO0330 0.83 +4.4 333,934 + SO0330 0.83 +2.3 333,988 - SO0330 0.87 -0.4 334,096 - +0.6 334,227 + SO0331 0.17 -0.5 334,227 + SO0331 0.17 +1.0 334,227 + SO0331 0.17 +0.3 334,228 - SO0331 0.17 -1.0 334,235 - SO0331 0.20 +2.2 334,428 - SO0331 0.83 -0.3 334,462 + +0.6 334,470 - +1.2 334,542 - -0.4 334,542 - +1.9 334,542 - -0.8 334,550 - +1.2 334,606 - -0.5 334,641 - SO0332 0.12 +0.1 334,641 - SO0332 0.12 -0.1 334,657 + SO0332 0.13 +1.5 334,713 + SO0332 0.18 +0.2 334,713 + SO0332 0.18 +0.5 334,834 - SO0332 0.30 -1.3 334,836 + SO0332 0.30 +1.0 334,836 + SO0332 0.30 -1.2 334,836 + SO0332 0.30 -2.3 334,836 + SO0332 0.30 -0.2 334,836 + SO0332 0.30 -0.9 334,836 + SO0332 0.30 +0.1 334,842 + SO0332 0.31 -2.8 334,843 + SO0332 0.31 +0.5 334,844 - SO0332 0.31 -0.1 334,844 - SO0332 0.31 +2.5 334,851 - SO0332 0.32 +0.3 334,851 - SO0332 0.32 -0.4 334,929 - SO0332 0.39 +0.2 334,967 + SO0332 0.43 +1.0 335,004 - SO0332 0.47 -1.6 335,044 + SO0332 0.50 +0.6 335,044 + SO0332 0.50 -0.8 335,062 - SO0332 0.52 -2.4 335,062 - SO0332 0.52 +1.1 335,109 + SO0332 0.57 -2.4 335,120 + SO0332 0.58 -1.2 335,128 - SO0332 0.58 -0.5 335,128 - SO0332 0.58 +1.6 335,128 - SO0332 0.58 -1.5 335,128 - SO0332 0.58 -2.2 335,146 + SO0332 0.60 -0.8 335,369 + SO0332 0.82 -1.7 335,369 + SO0332 0.82 -0.4 335,369 + SO0332 0.82 -0.0 335,377 - SO0332 0.82 +0.4 335,377 - SO0332 0.82 +1.2 335,405 - SO0332 0.85 -1.6 335,425 - SO0332 0.87 -1.4
Or see this region's nucleotide sequence