Strain Fitness in Shewanella oneidensis MR-1 around SO0214

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurB and birA overlap by 8 nucleotidesbirA and panK are separated by 2 nucleotides SO0213: murB - UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI ptt file), at 223,639 to 224,664 murB SO0214: birA - birA bifunctional protein (NCBI ptt file), at 224,657 to 225,616 birA SO0215: panK - pantothenate kinase (NCBI ptt file), at 225,619 to 226,569 panK Position (kb) 224 225 226Strain fitness (log2 ratio) -1 0 1 2 3at 226.604 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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226,604 - +2.9

Or see this region's nucleotide sequence