Strain Fitness in Shewanella oneidensis MR-1 around SO0107

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
116,790	+	selB	SO0106	0.56	-2.8
116,832	-	selB	SO0106	0.58	-0.2
117,006	-	selB	SO0106	0.67	+2.4
117,026	+	selB	SO0106	0.68	-1.7
117,081	-	selB	SO0106	0.70	+0.7
117,117	+	selB	SO0106	0.72	+1.1
117,134	+	selB	SO0106	0.73	-0.3
117,152	-	selB	SO0106	0.74	+1.9
117,159	+	selB	SO0106	0.74	+1.3
117,274	+	selB	SO0106	0.80	-1.2
117,274	+	selB	SO0106	0.80	-0.6
117,274	+	selB	SO0106	0.80	-1.7
117,282	-	selB	SO0106	0.80	-2.2
117,317	+	selB	SO0106	0.82	-2.9
117,349	-	selB	SO0106	0.84	+0.9
117,394	-	selB	SO0106	0.86	+0.3
117,400	-	selB	SO0106	0.86	+2.0
117,407	+	selB	SO0106	0.87	-0.5
117,430	+	selB	SO0106	0.88	+0.5
117,576	+				+1.1
117,576	+				+0.3
117,576	+				+1.0
117,576	+				-0.8
117,584	-				-2.4
117,601	-				+0.7
117,628	-				-1.3
117,679	+				-1.9
117,895	+	fdhD	SO0107	0.13	-1.6
117,901	-	fdhD	SO0107	0.14	-3.1
117,970	-	fdhD	SO0107	0.22	-0.6
118,039	-	fdhD	SO0107	0.30	+0.4
118,080	+	fdhD	SO0107	0.35	-2.1
118,119	+	fdhD	SO0107	0.40	-2.0
118,127	-	fdhD	SO0107	0.41	-1.8
118,147	-	fdhD	SO0107	0.43	-0.9
118,152	-	fdhD	SO0107	0.44	-0.1
118,228	+	fdhD	SO0107	0.53	-1.0
118,248	+	fdhD	SO0107	0.55	-0.4
118,256	-	fdhD	SO0107	0.56	-0.9
118,256	-	fdhD	SO0107	0.56	-0.4
118,256	-	fdhD	SO0107	0.56	-1.4
118,292	-	fdhD	SO0107	0.61	+0.9
118,311	-	fdhD	SO0107	0.63	-1.1
118,328	+	fdhD	SO0107	0.65	-1.0
118,333	+	fdhD	SO0107	0.65	-0.1
118,430	+	fdhD	SO0107	0.77	-1.6
118,519	+	fdhD	SO0107	0.88	+0.0
118,526	-	fdhD	SO0107	0.89	-1.8
118,564	+				+1.3
118,635	-				+1.4
118,644	-				+1.8
118,865	-				+0.3
118,947	+		SO0108	0.16	-3.4
118,969	+		SO0108	0.18	-1.1
118,969	+		SO0108	0.18	+2.6
118,969	+		SO0108	0.18	-0.6
118,969	+		SO0108	0.18	-0.8
118,969	+		SO0108	0.18	-3.3
118,969	+		SO0108	0.18	+1.1
118,969	+		SO0108	0.18	+0.5
118,969	+		SO0108	0.18	-0.3
118,969	+		SO0108	0.18	-0.7
118,969	+		SO0108	0.18	-2.2
118,969	+		SO0108	0.18	-0.4
118,977	-		SO0108	0.19	+2.0
118,977	-		SO0108	0.19	-1.4
118,977	-		SO0108	0.19	-0.9
118,977	-		SO0108	0.19	+0.1
118,977	-		SO0108	0.19	-0.1
118,977	-		SO0108	0.19	-0.1
118,977	-		SO0108	0.19	+1.6
118,977	-		SO0108	0.19	+0.5
118,977	-		SO0108	0.19	+0.5
119,063	-		SO0108	0.26	+0.7
119,069	+		SO0108	0.27	+1.2
119,083	+		SO0108	0.28	-0.1
119,096	-		SO0108	0.29	+1.5
119,137	+		SO0108	0.32	-1.4
119,394	-		SO0108	0.53	+1.6
119,399	+		SO0108	0.54	-0.6
119,416	+		SO0108	0.55	+0.3
119,417	-		SO0108	0.55	-0.5
119,424	-		SO0108	0.56	+1.1
119,429	-		SO0108	0.56	-0.7
119,443	-		SO0108	0.57	+0.8
119,458	+		SO0108	0.59	-1.6
119,499	-		SO0108	0.62	-1.8
119,501	-		SO0108	0.62	+0.7
119,512	+		SO0108	0.63	+2.3
119,606	-		SO0108	0.71	-0.6