Strain Fitness in Shewanella oneidensis MR-1 around SO0057

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0056 and SO0057 are separated by 111 nucleotidesSO0057 and SO0058 are separated by 1 nucleotidesSO0058 and kdpE are separated by 45 nucleotides SO0056: SO0056 - transporter, putative (NCBI ptt file), at 63,429 to 64,187 SO0056 SO0057: SO0057 - potassium uptake protein, Trk family (NCBI ptt file), at 64,299 to 65,660 SO0057 SO0058: SO0058 - potassium uptake protein, putative (NCBI ptt file), at 65,662 to 66,360 SO0058 SO0059: kdpE - transcriptional regulatory protein KdpE (NCBI ptt file), at 66,406 to 67,095 kdpE Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 63.301 kb on + strandat 63.344 kb on - strandat 63.349 kb on - strandat 63.357 kb on + strandat 63.406 kb on - strandat 63.498 kb on + strandat 63.541 kb on - strand, within SO0056at 63.587 kb on + strand, within SO0056at 63.587 kb on + strand, within SO0056at 63.587 kb on + strand, within SO0056at 63.595 kb on - strand, within SO0056at 63.678 kb on + strand, within SO0056at 63.678 kb on + strand, within SO0056at 63.678 kb on + strand, within SO0056at 63.686 kb on - strand, within SO0056at 63.843 kb on - strand, within SO0056at 63.845 kb on + strand, within SO0056at 63.845 kb on + strand, within SO0056at 63.845 kb on + strand, within SO0056at 63.848 kb on - strand, within SO0056at 63.853 kb on - strand, within SO0056at 63.853 kb on - strand, within SO0056at 63.853 kb on - strand, within SO0056at 63.853 kb on - strand, within SO0056at 63.854 kb on - strand, within SO0056at 63.859 kb on - strand, within SO0056at 63.912 kb on + strand, within SO0056at 63.920 kb on - strand, within SO0056at 64.031 kb on + strand, within SO0056at 64.071 kb on + strand, within SO0056at 64.077 kb on - strand, within SO0056at 64.079 kb on - strand, within SO0056at 64.079 kb on - strand, within SO0056at 64.171 kb on + strandat 64.179 kb on - strandat 64.189 kb on - strandat 64.216 kb on - strandat 64.216 kb on - strandat 64.226 kb on - strandat 64.240 kb on + strandat 64.264 kb on + strandat 64.320 kb on - strandat 64.343 kb on + strandat 64.343 kb on + strandat 64.416 kb on + strandat 64.416 kb on + strandat 64.421 kb on + strandat 64.463 kb on - strand, within SO0057at 64.468 kb on + strand, within SO0057at 64.561 kb on + strand, within SO0057at 64.577 kb on + strand, within SO0057at 64.585 kb on + strand, within SO0057at 64.653 kb on + strand, within SO0057at 64.660 kb on - strand, within SO0057at 64.676 kb on + strand, within SO0057at 64.684 kb on - strand, within SO0057at 64.684 kb on - strand, within SO0057at 64.684 kb on - strand, within SO0057at 64.752 kb on - strand, within SO0057at 64.754 kb on + strand, within SO0057at 64.762 kb on - strand, within SO0057at 64.762 kb on - strand, within SO0057at 64.811 kb on + strand, within SO0057at 64.811 kb on + strand, within SO0057at 64.819 kb on + strand, within SO0057at 64.819 kb on - strand, within SO0057at 64.869 kb on - strand, within SO0057at 64.910 kb on + strand, within SO0057at 64.918 kb on + strand, within SO0057at 64.923 kb on + strand, within SO0057at 64.928 kb on + strand, within SO0057at 64.928 kb on + strand, within SO0057at 64.936 kb on - strand, within SO0057at 64.936 kb on - strand, within SO0057at 65.002 kb on - strand, within SO0057at 65.020 kb on - strand, within SO0057at 65.099 kb on + strand, within SO0057at 65.165 kb on + strand, within SO0057at 65.220 kb on - strand, within SO0057at 65.262 kb on + strand, within SO0057at 65.333 kb on + strand, within SO0057at 65.341 kb on - strand, within SO0057at 65.342 kb on + strand, within SO0057at 65.385 kb on + strand, within SO0057at 65.391 kb on - strand, within SO0057at 65.403 kb on + strand, within SO0057at 65.627 kb on + strandat 65.627 kb on + strandat 65.627 kb on + strandat 65.649 kb on + strandat 65.649 kb on + strandat 65.660 kb on + strandat 65.670 kb on + strandat 65.672 kb on - strandat 65.678 kb on - strandat 65.693 kb on - strandat 65.693 kb on - strandat 65.693 kb on - strandat 65.712 kb on + strandat 65.737 kb on - strand, within SO0058at 65.739 kb on - strand, within SO0058at 65.798 kb on + strand, within SO0058at 65.798 kb on + strand, within SO0058at 65.830 kb on - strand, within SO0058at 65.850 kb on + strand, within SO0058at 65.868 kb on - strand, within SO0058at 65.871 kb on + strand, within SO0058at 65.953 kb on + strand, within SO0058at 65.955 kb on + strand, within SO0058at 65.960 kb on + strand, within SO0058at 65.963 kb on - strand, within SO0058at 65.984 kb on - strand, within SO0058at 65.999 kb on + strand, within SO0058at 66.049 kb on - strand, within SO0058at 66.073 kb on - strand, within SO0058at 66.110 kb on + strand, within SO0058at 66.132 kb on + strand, within SO0058at 66.151 kb on + strand, within SO0058at 66.182 kb on - strandat 66.197 kb on - strand, within SO0058at 66.288 kb on + strand, within SO0058at 66.310 kb on + strandat 66.310 kb on + strandat 66.311 kb on - strandat 66.318 kb on - strandat 66.331 kb on + strandat 66.343 kb on - strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.398 kb on - strandat 66.398 kb on - strandat 66.412 kb on - strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.444 kb on - strandat 66.444 kb on - strandat 66.444 kb on - strandat 66.452 kb on + strandat 66.460 kb on + strandat 66.473 kb on + strandat 66.546 kb on + strand, within kdpEat 66.583 kb on - strand, within kdpEat 66.585 kb on - strand, within kdpEat 66.607 kb on - strand, within kdpE

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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63,301 + +1.4
63,344 - -1.4
63,349 - -0.0
63,357 + +0.8
63,406 - -1.5
63,498 + +1.0
63,541 - SO0056 0.15 +0.6
63,587 + SO0056 0.21 -1.1
63,587 + SO0056 0.21 +0.5
63,587 + SO0056 0.21 +0.3
63,595 - SO0056 0.22 -1.9
63,678 + SO0056 0.33 -1.1
63,678 + SO0056 0.33 +1.2
63,678 + SO0056 0.33 +0.7
63,686 - SO0056 0.34 -0.5
63,843 - SO0056 0.55 -1.6
63,845 + SO0056 0.55 -0.6
63,845 + SO0056 0.55 +0.7
63,845 + SO0056 0.55 -0.8
63,848 - SO0056 0.55 +3.4
63,853 - SO0056 0.56 -0.5
63,853 - SO0056 0.56 +0.9
63,853 - SO0056 0.56 +0.4
63,853 - SO0056 0.56 -1.6
63,854 - SO0056 0.56 +0.7
63,859 - SO0056 0.57 +0.1
63,912 + SO0056 0.64 -1.6
63,920 - SO0056 0.65 -0.5
64,031 + SO0056 0.79 +1.2
64,071 + SO0056 0.85 +2.2
64,077 - SO0056 0.85 -1.4
64,079 - SO0056 0.86 +0.7
64,079 - SO0056 0.86 -2.4
64,171 + -0.3
64,179 - +1.5
64,189 - -0.3
64,216 - +0.4
64,216 - +0.9
64,226 - -0.6
64,240 + -3.4
64,264 + +0.4
64,320 - -1.6
64,343 + +1.1
64,343 + -1.6
64,416 + +0.5
64,416 + -1.0
64,421 + -2.2
64,463 - SO0057 0.12 -0.6
64,468 + SO0057 0.12 +0.6
64,561 + SO0057 0.19 -0.6
64,577 + SO0057 0.20 +1.8
64,585 + SO0057 0.21 +0.5
64,653 + SO0057 0.26 -0.8
64,660 - SO0057 0.27 +0.0
64,676 + SO0057 0.28 +0.9
64,684 - SO0057 0.28 +0.1
64,684 - SO0057 0.28 -0.2
64,684 - SO0057 0.28 +0.6
64,752 - SO0057 0.33 +0.9
64,754 + SO0057 0.33 +1.8
64,762 - SO0057 0.34 +0.2
64,762 - SO0057 0.34 +0.5
64,811 + SO0057 0.38 +0.1
64,811 + SO0057 0.38 +0.5
64,819 + SO0057 0.38 +0.4
64,819 - SO0057 0.38 +1.3
64,869 - SO0057 0.42 -0.8
64,910 + SO0057 0.45 -1.5
64,918 + SO0057 0.45 +0.8
64,923 + SO0057 0.46 +0.8
64,928 + SO0057 0.46 -0.6
64,928 + SO0057 0.46 +2.9
64,936 - SO0057 0.47 +0.4
64,936 - SO0057 0.47 -3.5
65,002 - SO0057 0.52 -0.2
65,020 - SO0057 0.53 +0.7
65,099 + SO0057 0.59 +0.1
65,165 + SO0057 0.64 -0.1
65,220 - SO0057 0.68 +0.7
65,262 + SO0057 0.71 -0.3
65,333 + SO0057 0.76 -0.3
65,341 - SO0057 0.77 -1.4
65,342 + SO0057 0.77 -2.8
65,385 + SO0057 0.80 +1.0
65,391 - SO0057 0.80 +1.9
65,403 + SO0057 0.81 +0.8
65,627 + -2.9
65,627 + +0.1
65,627 + +0.4
65,649 + +0.4
65,649 + -0.4
65,660 + -0.2
65,670 + +0.9
65,672 - -1.1
65,678 - -2.1
65,693 - -0.8
65,693 - +1.6
65,693 - -0.1
65,712 + -0.4
65,737 - SO0058 0.11 +0.4
65,739 - SO0058 0.11 +0.4
65,798 + SO0058 0.19 +1.1
65,798 + SO0058 0.19 -1.4
65,830 - SO0058 0.24 +1.0
65,850 + SO0058 0.27 -2.0
65,868 - SO0058 0.29 +1.5
65,871 + SO0058 0.30 +0.1
65,953 + SO0058 0.42 +1.2
65,955 + SO0058 0.42 +1.4
65,960 + SO0058 0.43 +0.9
65,963 - SO0058 0.43 +1.3
65,984 - SO0058 0.46 +1.0
65,999 + SO0058 0.48 -0.4
66,049 - SO0058 0.55 -0.3
66,073 - SO0058 0.59 +1.0
66,110 + SO0058 0.64 -0.8
66,132 + SO0058 0.67 +0.9
66,151 + SO0058 0.70 -0.4
66,182 - +2.7
66,197 - SO0058 0.77 -1.1
66,288 + SO0058 0.90 -2.5
66,310 + -0.5
66,310 + +0.4
66,311 - +0.9
66,318 - +0.8
66,331 + -0.1
66,343 - -2.8
66,390 + -3.0
66,390 + -0.0
66,390 + +0.5
66,390 + +0.8
66,390 + -1.1
66,390 + -2.8
66,390 + +1.1
66,398 - +4.3
66,398 - -0.3
66,412 - -1.2
66,436 + -0.6
66,436 + -2.7
66,436 + -1.1
66,436 + -0.9
66,444 - -0.4
66,444 - -0.4
66,444 - +1.3
66,452 + -0.4
66,460 + +1.6
66,473 + -3.3
66,546 + kdpE SO0059 0.20 +0.9
66,583 - kdpE SO0059 0.26 -1.1
66,585 - kdpE SO0059 0.26 -1.5
66,607 - kdpE SO0059 0.29 -0.2

Or see this region's nucleotide sequence