Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fmt and def-1 are separated by 15 nucleotides def-1 and SO0033 are separated by 125 nucleotides SO0033 and SO0034 are separated by 83 nucleotides
SO0031: fmt - methionyl-tRNA formyltransferase (NCBI ptt file), at 36,420 to 37,376
fmt
SO0032: def-1 - polypeptide deformylase (NCBI ptt file), at 37,392 to 37,898
def-1
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
SO0034: SO0034 - DNA processing protein DprA, putative (NCBI ptt file), at 39,244 to 40,260
SO0034
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.454 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.563 kb on - strand, within def-1 at 37.576 kb on - strand, within def-1 at 37.601 kb on - strand, within def-1 at 37.637 kb on - strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.834 kb on + strand, within def-1 at 37.875 kb on + strand at 37.883 kb on - strand at 37.947 kb on + strand at 37.955 kb on - strand at 37.955 kb on - strand at 37.955 kb on - strand at 38.001 kb on - strand at 38.068 kb on - strand at 38.068 kb on - strand at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033 at 38.434 kb on - strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.483 kb on + strand, within SO0033 at 38.485 kb on + strand, within SO0033 at 38.543 kb on + strand, within SO0033 at 38.577 kb on + strand, within SO0033 at 38.585 kb on - strand, within SO0033 at 38.603 kb on + strand, within SO0033 at 38.712 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.831 kb on + strand, within SO0033 at 38.836 kb on + strand, within SO0033 at 38.859 kb on + strand, within SO0033 at 38.862 kb on - strand, within SO0033 at 38.877 kb on - strand, within SO0033 at 38.882 kb on - strand, within SO0033 at 38.977 kb on - strand, within SO0033 at 38.992 kb on + strand, within SO0033 at 39.153 kb on - strand at 39.207 kb on + strand at 39.257 kb on + strand at 39.265 kb on - strand at 39.362 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.408 kb on + strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.416 kb on - strand, within SO0034 at 39.421 kb on - strand, within SO0034 at 39.470 kb on + strand, within SO0034 at 39.615 kb on - strand, within SO0034 at 39.616 kb on - strand, within SO0034 at 39.625 kb on + strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.625 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.633 kb on - strand, within SO0034 at 39.649 kb on + strand, within SO0034 at 39.661 kb on + strand, within SO0034 at 39.737 kb on + strand, within SO0034 at 39.763 kb on + strand, within SO0034 at 39.880 kb on - strand, within SO0034 at 40.061 kb on + strand, within SO0034
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 37,454 - def-1 SO0032 0.12 +0.4 37,488 - def-1 SO0032 0.19 +1.6 37,488 - def-1 SO0032 0.19 -1.7 37,563 - def-1 SO0032 0.34 -1.2 37,576 - def-1 SO0032 0.36 -3.0 37,601 - def-1 SO0032 0.41 -2.9 37,637 - def-1 SO0032 0.48 -1.7 37,822 + def-1 SO0032 0.85 -2.4 37,822 + def-1 SO0032 0.85 +0.7 37,822 + def-1 SO0032 0.85 -1.0 37,822 + def-1 SO0032 0.85 +0.2 37,822 + def-1 SO0032 0.85 -0.3 37,822 + def-1 SO0032 0.85 +0.1 37,822 + def-1 SO0032 0.85 +0.9 37,822 + def-1 SO0032 0.85 -2.6 37,822 + def-1 SO0032 0.85 +0.7 37,830 - def-1 SO0032 0.86 -0.1 37,830 - def-1 SO0032 0.86 -1.5 37,830 - def-1 SO0032 0.86 -2.1 37,830 - def-1 SO0032 0.86 +0.3 37,830 - def-1 SO0032 0.86 -1.0 37,830 - def-1 SO0032 0.86 -2.7 37,830 - def-1 SO0032 0.86 -0.7 37,830 - def-1 SO0032 0.86 +0.7 37,830 - def-1 SO0032 0.86 -2.5 37,830 - def-1 SO0032 0.86 -1.3 37,830 - def-1 SO0032 0.86 -1.4 37,834 + def-1 SO0032 0.87 -2.6 37,875 + +2.3 37,883 - -0.0 37,947 + +1.6 37,955 - -1.8 37,955 - -0.3 37,955 - -1.7 38,001 - +0.6 38,068 - +0.5 38,068 - +0.4 38,260 + SO0033 0.21 +0.7 38,265 + SO0033 0.21 -0.9 38,273 - SO0033 0.22 +0.6 38,273 - SO0033 0.22 +1.1 38,273 - SO0033 0.22 +0.6 38,287 + SO0033 0.23 -1.6 38,287 + SO0033 0.23 -0.9 38,287 + SO0033 0.23 -1.0 38,295 - SO0033 0.24 -0.7 38,295 - SO0033 0.24 +0.9 38,295 - SO0033 0.24 +0.2 38,330 + SO0033 0.27 +0.8 38,434 - SO0033 0.36 -0.6 38,454 + SO0033 0.38 +0.2 38,454 + SO0033 0.38 +1.3 38,476 - SO0033 0.40 -3.3 38,476 - SO0033 0.40 +1.3 38,483 + SO0033 0.40 +1.5 38,485 + SO0033 0.41 +1.1 38,543 + SO0033 0.46 -0.6 38,577 + SO0033 0.49 -0.4 38,585 - SO0033 0.49 +1.3 38,603 + SO0033 0.51 -0.5 38,712 + SO0033 0.61 -1.9 38,779 + SO0033 0.66 +0.2 38,779 + SO0033 0.66 -2.1 38,779 + SO0033 0.66 +1.9 38,787 - SO0033 0.67 -2.1 38,787 - SO0033 0.67 -1.0 38,787 - SO0033 0.67 -1.4 38,787 - SO0033 0.67 -3.1 38,831 + SO0033 0.71 -0.1 38,836 + SO0033 0.71 -0.0 38,859 + SO0033 0.73 -0.9 38,862 - SO0033 0.74 -1.0 38,877 - SO0033 0.75 -0.3 38,882 - SO0033 0.75 +0.2 38,977 - SO0033 0.84 -0.8 38,992 + SO0033 0.85 +0.9 39,153 - +0.5 39,207 + -3.0 39,257 + -0.2 39,265 - -1.5 39,362 + SO0034 0.12 -0.2 39,408 + SO0034 0.16 +1.6 39,408 + SO0034 0.16 +0.8 39,416 - SO0034 0.17 -1.2 39,416 - SO0034 0.17 +1.1 39,416 - SO0034 0.17 -0.5 39,421 - SO0034 0.17 +0.1 39,470 + SO0034 0.22 +0.9 39,615 - SO0034 0.36 -2.0 39,616 - SO0034 0.37 +0.6 39,625 + SO0034 0.37 +0.7 39,625 - SO0034 0.37 +0.5 39,625 - SO0034 0.37 +1.3 39,633 - SO0034 0.38 +0.3 39,633 - SO0034 0.38 +0.1 39,633 - SO0034 0.38 -1.3 39,649 + SO0034 0.40 +1.2 39,661 + SO0034 0.41 -1.3 39,737 + SO0034 0.48 -1.3 39,763 + SO0034 0.51 -0.6 39,880 - SO0034 0.63 -1.8 40,061 + SO0034 0.80 +1.3
Or see this region's nucleotide sequence