Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sun and fmt are separated by 2 nucleotides fmt and def-1 are separated by 15 nucleotides def-1 and SO0033 are separated by 125 nucleotides
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
SO0031: fmt - methionyl-tRNA formyltransferase (NCBI ptt file), at 36,420 to 37,376
fmt
SO0032: def-1 - polypeptide deformylase (NCBI ptt file), at 37,392 to 37,898
def-1
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
Position (kb) 36
37
38 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 35.663 kb on - strand, within sun at 35.730 kb on + strand, within sun at 35.740 kb on + strand, within sun at 35.764 kb on - strand, within sun at 35.843 kb on + strand, within sun at 35.843 kb on + strand, within sun at 35.915 kb on - strand, within sun at 35.922 kb on + strand, within sun at 35.937 kb on + strand, within sun at 35.937 kb on + strand, within sun at 36.046 kb on + strand, within sun at 36.068 kb on + strand, within sun at 36.120 kb on - strand, within sun at 36.142 kb on + strand, within sun at 36.190 kb on - strand, within sun at 36.227 kb on + strand, within sun at 36.276 kb on + strand, within sun at 36.286 kb on + strand, within sun at 36.286 kb on - strand, within sun at 36.303 kb on - strand at 36.359 kb on - strand at 36.460 kb on - strand at 37.454 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.563 kb on - strand, within def-1 at 37.576 kb on - strand, within def-1 at 37.601 kb on - strand, within def-1 at 37.637 kb on - strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.834 kb on + strand, within def-1 at 37.875 kb on + strand at 37.883 kb on - strand at 37.947 kb on + strand at 37.955 kb on - strand at 37.955 kb on - strand at 37.955 kb on - strand at 38.001 kb on - strand at 38.068 kb on - strand at 38.068 kb on - strand at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 35,663 - sun SO0030 0.41 +0.2 35,730 + sun SO0030 0.47 -1.6 35,740 + sun SO0030 0.47 +0.2 35,764 - sun SO0030 0.49 -1.1 35,843 + sun SO0030 0.55 +1.8 35,843 + sun SO0030 0.55 -1.0 35,915 - sun SO0030 0.61 -1.9 35,922 + sun SO0030 0.61 -1.5 35,937 + sun SO0030 0.63 -3.9 35,937 + sun SO0030 0.63 +1.7 36,046 + sun SO0030 0.71 -2.7 36,068 + sun SO0030 0.73 -1.4 36,120 - sun SO0030 0.77 +0.3 36,142 + sun SO0030 0.79 -1.1 36,190 - sun SO0030 0.82 +0.4 36,227 + sun SO0030 0.85 +2.5 36,276 + sun SO0030 0.89 -0.4 36,286 + sun SO0030 0.90 -2.7 36,286 - sun SO0030 0.90 -2.1 36,303 - -3.0 36,359 - -3.6 36,460 - -2.0 37,454 - def-1 SO0032 0.12 +0.4 37,488 - def-1 SO0032 0.19 +1.6 37,488 - def-1 SO0032 0.19 -1.7 37,563 - def-1 SO0032 0.34 -1.2 37,576 - def-1 SO0032 0.36 -3.0 37,601 - def-1 SO0032 0.41 -2.9 37,637 - def-1 SO0032 0.48 -1.7 37,822 + def-1 SO0032 0.85 -2.4 37,822 + def-1 SO0032 0.85 +0.7 37,822 + def-1 SO0032 0.85 -1.0 37,822 + def-1 SO0032 0.85 +0.2 37,822 + def-1 SO0032 0.85 -0.3 37,822 + def-1 SO0032 0.85 +0.1 37,822 + def-1 SO0032 0.85 +0.9 37,822 + def-1 SO0032 0.85 -2.6 37,822 + def-1 SO0032 0.85 +0.7 37,830 - def-1 SO0032 0.86 -0.1 37,830 - def-1 SO0032 0.86 -1.5 37,830 - def-1 SO0032 0.86 -2.1 37,830 - def-1 SO0032 0.86 +0.3 37,830 - def-1 SO0032 0.86 -1.0 37,830 - def-1 SO0032 0.86 -2.7 37,830 - def-1 SO0032 0.86 -0.7 37,830 - def-1 SO0032 0.86 +0.7 37,830 - def-1 SO0032 0.86 -2.5 37,830 - def-1 SO0032 0.86 -1.3 37,830 - def-1 SO0032 0.86 -1.4 37,834 + def-1 SO0032 0.87 -2.6 37,875 + +2.3 37,883 - -0.0 37,947 + +1.6 37,955 - -1.8 37,955 - -0.3 37,955 - -1.7 38,001 - +0.6 38,068 - +0.5 38,068 - +0.4 38,260 + SO0033 0.21 +0.7 38,265 + SO0033 0.21 -0.9 38,273 - SO0033 0.22 +0.6 38,273 - SO0033 0.22 +1.1 38,273 - SO0033 0.22 +0.6 38,287 + SO0033 0.23 -1.6 38,287 + SO0033 0.23 -0.9 38,287 + SO0033 0.23 -1.0 38,295 - SO0033 0.24 -0.7 38,295 - SO0033 0.24 +0.9 38,295 - SO0033 0.24 +0.2 38,330 + SO0033 0.27 +0.8
Or see this region's nucleotide sequence