Strain Fitness in Shewanella oneidensis MR-1 around SO_2786
Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbenicillin 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,908,519 | - | rne | SO2785 | 0.75 | +2.4 |
2,908,522 | + | rne | SO2785 | 0.75 | +0.2 |
2,908,591 | + | rne | SO2785 | 0.77 | +2.8 |
2,908,597 | + | rne | SO2785 | 0.77 | +2.7 |
2,908,602 | + | rne | SO2785 | 0.77 | +1.2 |
2,908,610 | - | rne | SO2785 | 0.78 | +0.3 |
2,908,610 | - | rne | SO2785 | 0.78 | +2.4 |
2,908,648 | + | rne | SO2785 | 0.79 | +1.5 |
2,908,656 | - | rne | SO2785 | 0.79 | +1.0 |
2,908,739 | + | rne | SO2785 | 0.82 | +3.8 |
2,908,810 | - | rne | SO2785 | 0.84 | +1.4 |
2,908,942 | + | rne | SO2785 | 0.88 | +3.2 |
2,908,950 | - | rne | SO2785 | 0.88 | +2.2 |
2,909,073 | + | +2.0 | |||
2,909,144 | - | +3.0 | |||
2,909,146 | + | +1.0 | |||
2,909,154 | - | +2.2 | |||
2,909,497 | + | SO_2786 | 0.15 | -3.2 | |
2,909,519 | + | SO_2786 | 0.26 | -2.5 | |
2,909,550 | - | SO_2786 | 0.40 | +0.8 | |
2,909,596 | + | SO_2786 | 0.62 | +0.5 | |
2,910,360 | - | -0.5 | |||
2,910,531 | - | rrmA | SO2788 | 0.20 | -1.3 |
Or see this region's nucleotide sequence