Strain Fitness in Shewanella oneidensis MR-1 around SO_2783

Experiment: Carbenicillin 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.008 mg/ml
2,902,839	-				+1.4
2,903,008	-		SO2782	0.10	-1.2
2,903,008	-		SO2782	0.10	+1.2
2,903,035	+		SO2782	0.15	-2.6
2,903,102	+		SO2782	0.26	+1.7
2,903,119	+		SO2782	0.28	-1.0
2,903,119	+		SO2782	0.28	-0.2
2,903,127	-		SO2782	0.30	-0.8
2,903,174	-		SO2782	0.37	-0.2
2,903,270	+		SO2782	0.53	+1.1
2,903,305	+		SO2782	0.59	-0.3
2,903,314	+		SO2782	0.60	-1.7
2,903,361	+		SO2782	0.68	-0.4
2,903,437	+		SO2782	0.80	-0.3
2,903,437	+		SO2782	0.80	+0.4
2,903,437	+		SO2782	0.80	-0.8
2,903,445	-		SO2782	0.82	-2.3
2,903,488	-		SO2782	0.89	+2.4
2,903,545	+				-1.0
2,903,630	+				-0.5
2,903,666	-				-0.2
2,903,751	+				+0.4
2,903,776	-		SO_2783	0.12	+0.7
2,903,926	-		SO_2783	0.46	+0.4
2,904,120	+				+0.8
2,904,183	-				-0.9
2,904,183	-				+0.0
2,904,213	+				+1.0
2,904,280	+				+1.4
2,904,346	-				-2.3
2,904,410	+				-0.9
2,904,448	-				+0.9
2,904,450	+				+1.4
2,904,450	+				+2.0
2,904,450	+				+1.9
2,904,460	-				-0.3
2,904,483	-				+0.3
2,904,506	-				-0.4
2,904,575	-				+1.8
2,904,643	+		SO_2784	0.13	+1.7
2,904,643	+		SO_2784	0.13	+2.2
2,904,651	-		SO_2784	0.14	+1.5
2,904,651	-		SO_2784	0.14	+2.1
2,904,706	-		SO_2784	0.20	+1.0
2,904,772	-		SO_2784	0.27	+1.1
2,904,870	-		SO_2784	0.37	+1.9
2,904,905	-		SO_2784	0.41	+2.3
2,904,905	-		SO_2784	0.41	+2.8
2,904,905	-		SO_2784	0.41	+2.8
2,904,905	-		SO_2784	0.41	+1.9
2,904,910	-		SO_2784	0.41	+1.8
2,904,926	+		SO_2784	0.43	+1.8
2,904,931	+		SO_2784	0.43	+1.5
2,904,978	-		SO_2784	0.48	+1.6
2,905,080	-		SO_2784	0.59	+0.3