Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_201 and HP15_202 overlap by 4 nucleotides HP15_202 and HP15_203 are separated by 4 nucleotides
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528
_202
HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531
_203
HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538
_204
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201 at 189.504 kb on - strand at 189.556 kb on + strand at 189.568 kb on - strand at 189.571 kb on - strand at 189.766 kb on + strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.859 kb on + strand, within HP15_202 at 189.984 kb on - strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.138 kb on + strand, within HP15_202 at 190.157 kb on + strand, within HP15_202 at 190.300 kb on - strand, within HP15_202 at 190.375 kb on - strand, within HP15_202 at 190.421 kb on - strand, within HP15_202 at 190.506 kb on + strand at 190.506 kb on + strand at 190.523 kb on + strand at 190.524 kb on - strand at 190.531 kb on + strand at 190.531 kb on - strand at 190.539 kb on - strand at 190.582 kb on + strand at 190.622 kb on + strand at 190.622 kb on + strand at 190.630 kb on - strand at 190.653 kb on - strand, within HP15_203 at 190.746 kb on + strand, within HP15_203 at 190.771 kb on + strand, within HP15_203 at 190.792 kb on + strand, within HP15_203 at 190.845 kb on + strand, within HP15_203 at 190.853 kb on - strand, within HP15_203 at 190.886 kb on - strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.923 kb on + strand, within HP15_203 at 190.931 kb on - strand, within HP15_203 at 190.931 kb on - strand, within HP15_203 at 190.967 kb on - strand, within HP15_203 at 190.992 kb on - strand, within HP15_203 at 190.994 kb on + strand, within HP15_203 at 190.994 kb on + strand, within HP15_203 at 191.164 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.273 kb on + strand, within HP15_203 at 191.275 kb on + strand, within HP15_203 at 191.281 kb on - strand, within HP15_203 at 191.281 kb on - strand, within HP15_203 at 191.299 kb on - strand, within HP15_203 at 191.308 kb on + strand, within HP15_203 at 191.311 kb on - strand, within HP15_203 at 191.418 kb on - strand, within HP15_203
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 188,634 + -0.2 188,658 + -0.5 188,684 + HP15_201 0.12 -0.2 188,956 - HP15_201 0.38 -0.8 189,013 + HP15_201 0.43 -0.6 189,013 - HP15_201 0.43 -0.8 189,021 - HP15_201 0.44 -0.7 189,166 + HP15_201 0.58 -0.1 189,166 + HP15_201 0.58 -0.3 189,174 - HP15_201 0.59 -0.3 189,174 - HP15_201 0.59 -0.8 189,221 + HP15_201 0.63 +0.4 189,239 + HP15_201 0.65 -0.4 189,293 + HP15_201 0.70 -0.5 189,325 - HP15_201 0.74 +0.2 189,338 + HP15_201 0.75 -0.7 189,344 - HP15_201 0.75 -0.7 189,393 - HP15_201 0.80 +0.1 189,441 + HP15_201 0.85 -0.4 189,504 - -0.4 189,556 + -0.4 189,568 - +0.2 189,571 - -0.3 189,766 + HP15_202 0.18 -0.8 189,774 - HP15_202 0.19 -0.1 189,774 - HP15_202 0.19 -0.7 189,859 + HP15_202 0.28 -0.3 189,984 - HP15_202 0.42 -0.1 190,057 + HP15_202 0.49 -0.2 190,057 + HP15_202 0.49 +0.2 190,065 - HP15_202 0.50 -0.2 190,065 - HP15_202 0.50 -0.9 190,138 + HP15_202 0.58 -0.4 190,157 + HP15_202 0.60 -0.6 190,300 - HP15_202 0.75 -0.5 190,375 - HP15_202 0.83 -0.6 190,421 - HP15_202 0.88 -1.5 190,506 + -0.2 190,506 + -0.6 190,523 + +0.0 190,524 - -0.2 190,531 + -0.3 190,531 - -0.5 190,539 - -1.4 190,582 + -0.2 190,622 + -0.3 190,622 + -0.1 190,630 - -0.7 190,653 - HP15_203 0.12 -0.6 190,746 + HP15_203 0.21 -1.3 190,771 + HP15_203 0.24 -0.4 190,792 + HP15_203 0.26 +0.1 190,845 + HP15_203 0.31 -0.5 190,853 - HP15_203 0.32 -0.3 190,886 - HP15_203 0.35 -0.3 190,923 + HP15_203 0.39 +0.5 190,923 + HP15_203 0.39 -0.1 190,923 + HP15_203 0.39 -0.8 190,923 + HP15_203 0.39 -0.4 190,931 - HP15_203 0.40 +0.1 190,931 - HP15_203 0.40 -0.4 190,967 - HP15_203 0.43 +0.6 190,992 - HP15_203 0.46 -0.1 190,994 + HP15_203 0.46 -0.4 190,994 + HP15_203 0.46 -0.5 191,164 + HP15_203 0.63 -0.9 191,273 + HP15_203 0.74 +0.0 191,273 + HP15_203 0.74 -0.7 191,273 + HP15_203 0.74 -0.1 191,275 + HP15_203 0.74 +0.6 191,281 - HP15_203 0.75 -1.0 191,281 - HP15_203 0.75 -0.2 191,299 - HP15_203 0.77 -0.2 191,308 + HP15_203 0.78 +0.3 191,311 - HP15_203 0.78 -0.1 191,418 - HP15_203 0.89 -2.1
Or see this region's nucleotide sequence