Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1571

Experiment: Glucose defined 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1570 and Psest_1571 are separated by 7 nucleotidesPsest_1571 and Psest_1572 are separated by 301 nucleotidesPsest_1572 and Psest_1573 overlap by 4 nucleotides Psest_1570: Psest_1570 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,672,044 to 1,673,480 _1570 Psest_1571: Psest_1571 - cytochrome c oxidase accessory protein FixG, at 1,673,488 to 1,674,906 _1571 Psest_1572: Psest_1572 - Putative effector of murein hydrolase LrgA, at 1,675,208 to 1,675,573 _1572 Psest_1573: Psest_1573 - Putative effector of murein hydrolase, at 1,675,570 to 1,676,280 _1573 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1672.591 kb on + strand, within Psest_1570at 1672.591 kb on + strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.844 kb on - strand, within Psest_1570at 1672.844 kb on - strand, within Psest_1570at 1672.975 kb on + strand, within Psest_1570at 1672.975 kb on + strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1673.307 kb on + strand, within Psest_1570at 1673.308 kb on - strand, within Psest_1570at 1673.308 kb on - strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.315 kb on - strand, within Psest_1570at 1673.315 kb on - strand, within Psest_1570at 1673.347 kb on + strandat 1673.733 kb on + strand, within Psest_1571at 1673.734 kb on - strand, within Psest_1571at 1673.753 kb on + strand, within Psest_1571at 1673.753 kb on + strand, within Psest_1571at 1673.754 kb on - strand, within Psest_1571at 1673.754 kb on - strand, within Psest_1571at 1673.948 kb on + strand, within Psest_1571at 1674.173 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571at 1674.673 kb on - strand, within Psest_1571at 1674.673 kb on - strand, within Psest_1571at 1674.813 kb on + strandat 1674.921 kb on + strandat 1674.991 kb on + strandat 1675.166 kb on + strandat 1675.166 kb on + strandat 1675.167 kb on - strandat 1675.389 kb on - strand, within Psest_1572at 1675.759 kb on + strand, within Psest_1573at 1675.760 kb on - strand, within Psest_1573

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined 30C timecourse1 timepoint 1
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1,672,591 + Psest_1570 0.38 +0.7
1,672,591 + Psest_1570 0.38 +1.4
1,672,592 - Psest_1570 0.38 -3.0
1,672,592 - Psest_1570 0.38 +1.6
1,672,592 - Psest_1570 0.38 +0.5
1,672,652 - Psest_1570 0.42 +0.7
1,672,652 - Psest_1570 0.42 -0.0
1,672,652 - Psest_1570 0.42 -0.4
1,672,843 + Psest_1570 0.56 +0.5
1,672,843 + Psest_1570 0.56 +1.3
1,672,843 + Psest_1570 0.56 +0.1
1,672,843 + Psest_1570 0.56 -0.0
1,672,844 - Psest_1570 0.56 -0.2
1,672,844 - Psest_1570 0.56 +0.3
1,672,975 + Psest_1570 0.65 +0.7
1,672,975 + Psest_1570 0.65 +0.1
1,672,976 - Psest_1570 0.65 +0.1
1,672,976 - Psest_1570 0.65 -0.1
1,672,976 - Psest_1570 0.65 -0.1
1,673,307 + Psest_1570 0.88 +0.2
1,673,308 - Psest_1570 0.88 -0.4
1,673,308 - Psest_1570 0.88 +1.5
1,673,311 + Psest_1570 0.88 -0.0
1,673,311 + Psest_1570 0.88 -0.3
1,673,311 + Psest_1570 0.88 +1.0
1,673,311 + Psest_1570 0.88 +0.2
1,673,311 + Psest_1570 0.88 -0.0
1,673,312 - Psest_1570 0.88 -0.3
1,673,312 - Psest_1570 0.88 -0.0
1,673,312 - Psest_1570 0.88 -0.1
1,673,312 - Psest_1570 0.88 +0.8
1,673,312 - Psest_1570 0.88 +0.3
1,673,312 - Psest_1570 0.88 -0.6
1,673,312 - Psest_1570 0.88 -1.1
1,673,315 - Psest_1570 0.88 +0.1
1,673,315 - Psest_1570 0.88 +0.1
1,673,347 + -0.4
1,673,733 + Psest_1571 0.17 +0.4
1,673,734 - Psest_1571 0.17 +2.3
1,673,753 + Psest_1571 0.19 +0.2
1,673,753 + Psest_1571 0.19 +0.3
1,673,754 - Psest_1571 0.19 +0.5
1,673,754 - Psest_1571 0.19 -1.3
1,673,948 + Psest_1571 0.32 +0.5
1,674,173 + Psest_1571 0.48 +0.3
1,674,234 + Psest_1571 0.53 +0.8
1,674,234 + Psest_1571 0.53 +1.8
1,674,234 + Psest_1571 0.53 +1.0
1,674,234 + Psest_1571 0.53 +1.1
1,674,234 + Psest_1571 0.53 +1.7
1,674,234 + Psest_1571 0.53 +0.4
1,674,234 + Psest_1571 0.53 -0.6
1,674,234 + Psest_1571 0.53 +0.3
1,674,234 + Psest_1571 0.53 +1.2
1,674,234 + Psest_1571 0.53 +0.7
1,674,234 + Psest_1571 0.53 +0.7
1,674,234 + Psest_1571 0.53 -0.2
1,674,234 + Psest_1571 0.53 +0.5
1,674,234 + Psest_1571 0.53 +0.7
1,674,234 + Psest_1571 0.53 -0.3
1,674,234 + Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +2.2
1,674,235 - Psest_1571 0.53 -0.0
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +0.3
1,674,235 - Psest_1571 0.53 +1.4
1,674,235 - Psest_1571 0.53 -0.1
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +0.4
1,674,235 - Psest_1571 0.53 +2.0
1,674,235 - Psest_1571 0.53 -0.5
1,674,235 - Psest_1571 0.53 -0.8
1,674,235 - Psest_1571 0.53 -0.6
1,674,235 - Psest_1571 0.53 -1.9
1,674,235 - Psest_1571 0.53 +1.1
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +0.0
1,674,235 - Psest_1571 0.53 +0.2
1,674,235 - Psest_1571 0.53 +0.5
1,674,235 - Psest_1571 0.53 +0.5
1,674,235 - Psest_1571 0.53 +0.4
1,674,235 - Psest_1571 0.53 -0.2
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +0.8
1,674,235 - Psest_1571 0.53 -1.6
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +0.2
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 -0.3
1,674,235 - Psest_1571 0.53 +1.0
1,674,235 - Psest_1571 0.53 +1.4
1,674,235 - Psest_1571 0.53 +0.5
1,674,235 - Psest_1571 0.53 -1.0
1,674,275 + Psest_1571 0.55 +1.1
1,674,275 + Psest_1571 0.55 -0.8
1,674,275 + Psest_1571 0.55 +0.6
1,674,275 + Psest_1571 0.55 +0.9
1,674,276 - Psest_1571 0.56 -0.0
1,674,276 - Psest_1571 0.56 -0.8
1,674,276 - Psest_1571 0.56 -0.8
1,674,673 - Psest_1571 0.84 -1.4
1,674,673 - Psest_1571 0.84 +0.6
1,674,813 + +0.3
1,674,921 + -1.2
1,674,991 + +0.3
1,675,166 + -0.2
1,675,166 + -0.0
1,675,167 - +0.3
1,675,389 - Psest_1572 0.49 -1.4
1,675,759 + Psest_1573 0.27 +0.4
1,675,760 - Psest_1573 0.27 -0.8

Or see this region's nucleotide sequence