Strain Fitness in Shewanella amazonensis SB2B around Sama_3482

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
4,113,452	-				+1.0
4,113,476	-				-2.5
4,113,484	-				-2.5
4,113,484	-				+0.2
4,113,484	-				+0.0
4,113,484	-				-0.9
4,113,484	-				-2.7
4,113,489	-				-1.2
4,113,489	-				-1.1
4,113,489	-				+2.0
4,113,515	+				-1.6
4,113,515	+				-0.3
4,113,516	-				-2.0
4,113,516	-				-0.2
4,113,516	-				-0.8
4,113,534	+				+0.4
4,113,534	+				+0.6
4,113,535	-				-1.1
4,113,535	-				-1.5
4,113,535	-				-0.2
4,113,535	-				-1.0
4,113,535	-				+1.0
4,113,560	-				+1.0
4,113,561	+				-2.6
4,113,570	+				-0.7
4,113,576	+				+0.2
4,113,576	+				-0.7
4,113,637	+				+0.2
4,113,637	+				-1.1
4,113,637	+				-0.9
4,113,638	-				-0.6
4,113,638	-				-1.0
4,113,707	+		Sama_3481	0.18	-0.1
4,113,707	+		Sama_3481	0.18	-0.9
4,113,716	+		Sama_3481	0.19	-0.4
4,113,716	+		Sama_3481	0.19	-0.6
4,113,737	+		Sama_3481	0.22	-2.1
4,113,737	+		Sama_3481	0.22	-0.0
4,113,737	+		Sama_3481	0.22	+0.6
4,113,737	+		Sama_3481	0.22	+0.4
4,113,770	+		Sama_3481	0.28	+0.1
4,113,771	-		Sama_3481	0.28	+1.8
4,113,791	+		Sama_3481	0.31	-2.7
4,113,847	+		Sama_3481	0.40	-0.2
4,113,847	+		Sama_3481	0.40	+0.2
4,113,847	+		Sama_3481	0.40	-1.6
4,113,847	+		Sama_3481	0.40	+0.3
4,113,847	+		Sama_3481	0.40	+0.4
4,113,847	+		Sama_3481	0.40	+1.4
4,113,847	+		Sama_3481	0.40	-0.1
4,113,900	+		Sama_3481	0.49	+0.1
4,113,900	+		Sama_3481	0.49	-0.0
4,113,901	-		Sama_3481	0.49	-1.4
4,113,901	-		Sama_3481	0.49	+1.0
4,113,901	-		Sama_3481	0.49	+0.1
4,113,903	+		Sama_3481	0.49	+0.1
4,113,903	+		Sama_3481	0.49	+1.5
4,113,903	+		Sama_3481	0.49	-2.8
4,113,904	-		Sama_3481	0.49	+1.7
4,113,904	-		Sama_3481	0.49	-1.9
4,113,968	+		Sama_3481	0.59	-1.7
4,113,968	+		Sama_3481	0.59	-2.3
4,113,968	+		Sama_3481	0.59	-1.7
4,113,968	+		Sama_3481	0.59	+1.1
4,113,968	+		Sama_3481	0.59	+0.4
4,113,969	-		Sama_3481	0.60	-2.1
4,113,979	+		Sama_3481	0.61	-0.1
4,113,979	+		Sama_3481	0.61	-1.4
4,113,979	+		Sama_3481	0.61	-0.5
4,113,979	+		Sama_3481	0.61	-0.0
4,113,979	+		Sama_3481	0.61	-1.0
4,113,979	+		Sama_3481	0.61	-1.5
4,113,979	+		Sama_3481	0.61	-2.1
4,113,979	+		Sama_3481	0.61	+0.2
4,113,979	+		Sama_3481	0.61	-1.2
4,113,979	+		Sama_3481	0.61	-0.6
4,113,979	+		Sama_3481	0.61	-0.8
4,113,979	+		Sama_3481	0.61	-1.7
4,113,979	+		Sama_3481	0.61	-0.6
4,113,979	+		Sama_3481	0.61	-0.5
4,113,980	-		Sama_3481	0.61	-1.6
4,113,980	-		Sama_3481	0.61	+1.6
4,113,980	-		Sama_3481	0.61	+1.7
4,113,983	+		Sama_3481	0.62	+0.9
4,113,983	+		Sama_3481	0.62	-0.4
4,113,983	+		Sama_3481	0.62	-0.5
4,113,983	+		Sama_3481	0.62	+0.0
4,113,983	+		Sama_3481	0.62	+0.2
4,114,075	+		Sama_3481	0.77	+0.4
4,114,075	+		Sama_3481	0.77	-1.8
4,114,107	+		Sama_3481	0.82	+0.6
4,114,107	+		Sama_3481	0.82	-1.8
4,114,107	+		Sama_3481	0.82	+1.0
4,114,107	+		Sama_3481	0.82	-0.9
4,114,107	+		Sama_3481	0.82	-0.4
4,114,108	-		Sama_3481	0.82	-1.0
4,114,108	-		Sama_3481	0.82	-0.6
4,114,108	-		Sama_3481	0.82	+1.0
4,114,108	-		Sama_3481	0.82	+0.7
4,114,108	-		Sama_3481	0.82	-1.9
4,114,111	+		Sama_3481	0.82	-0.4
4,114,111	+		Sama_3481	0.82	-0.6
4,114,111	+		Sama_3481	0.82	-0.0
4,114,111	+		Sama_3481	0.82	-3.2
4,114,111	+		Sama_3481	0.82	-1.6
4,114,111	+		Sama_3481	0.82	-1.4
4,114,111	+		Sama_3481	0.82	-0.6
4,114,111	+		Sama_3481	0.82	+0.3
4,114,111	+		Sama_3481	0.82	-1.5
4,114,139	+		Sama_3481	0.87	+1.5
4,114,196	+				-2.0
4,114,196	+				-2.0
4,114,202	+				+1.0
4,114,203	-				+0.7
4,114,216	+				-1.3
4,114,217	-				+1.4
4,114,234	+				+0.3
4,114,258	-				+2.0
4,114,258	-				+0.4
4,114,258	-				-1.6
4,114,306	+		Sama_3482	0.18	-1.0
4,114,307	-		Sama_3482	0.18	+0.1
4,114,307	-		Sama_3482	0.18	-0.3
4,114,393	-		Sama_3482	0.35	-1.4
4,114,393	-		Sama_3482	0.35	-0.6
4,114,393	-		Sama_3482	0.35	+2.3
4,114,393	-		Sama_3482	0.35	+0.8
4,114,400	-		Sama_3482	0.36	-1.7
4,114,424	-		Sama_3482	0.41	-1.3
4,114,424	-		Sama_3482	0.41	-1.2
4,114,429	+		Sama_3482	0.42	+0.5
4,114,430	-		Sama_3482	0.42	-0.6
4,114,430	-		Sama_3482	0.42	-1.5
4,114,521	+		Sama_3482	0.60	-2.7
4,114,521	+		Sama_3482	0.60	-1.2
4,114,531	+		Sama_3482	0.62	+0.4
4,114,532	-		Sama_3482	0.62	-1.8
4,114,579	+		Sama_3482	0.71	+1.7
4,114,580	-		Sama_3482	0.72	-1.2
4,114,580	-		Sama_3482	0.72	-1.4
4,114,627	+		Sama_3482	0.81	+0.6
4,114,641	+		Sama_3482	0.84	-0.4
4,114,687	-				-0.0
4,114,741	+				+1.2
4,114,771	-				+0.4
4,114,783	+				-0.0
4,114,784	-				-0.7
4,114,784	-				+4.1
4,114,794	+				-0.8
4,114,817	-				+0.9
4,114,827	+				-2.6
4,114,827	+				-1.7
4,114,828	-				+5.4
4,114,828	-				-0.6
4,114,828	-				+0.9
4,114,828	-				-1.0
4,114,828	-				-0.0
4,114,832	+				-1.0
4,114,832	+				+0.6
4,114,832	+				-0.7
4,114,832	+				+0.2
4,114,833	-				+2.1
4,114,833	-				-0.0
4,114,833	-				-1.5
4,114,860	+				+0.9
4,114,860	+				+1.2
4,114,860	+				-1.2
4,114,860	+				+2.5
4,114,860	+				-1.4
4,114,861	-				-0.5
4,114,861	-				-1.4
4,114,862	+				+0.6
4,114,863	-				+1.0
4,114,863	-				-0.2
4,114,874	+				+2.8
4,114,874	+				+1.2
4,114,874	+				-0.1
4,114,874	+				-0.5
4,114,874	+				-2.4
4,114,874	+				-1.8
4,114,875	-				+0.4
4,114,875	-				+0.9
4,114,887	+				-1.5
4,114,887	+				+1.5
4,114,887	+				+0.5
4,114,888	-				-1.0
4,114,888	-				+0.4
4,114,888	-				-0.4
4,114,888	-				+0.1
4,114,909	+				-1.4
4,114,909	+				-1.4
4,114,909	+				+1.6
4,114,909	+				+2.0
4,114,910	-				-0.0
4,114,910	-				+2.0
4,114,910	-				+0.1
4,114,916	+				+2.6
4,114,917	-				+1.4
4,114,917	-				+0.1
4,114,917	-				-1.4
4,114,928	-				-0.6
4,114,928	-				-0.0
4,114,929	+				-1.8
4,114,929	+				-2.0
4,114,929	+				+2.5
4,114,929	+				+1.2
4,114,930	-				+0.1
4,114,930	-				-1.0
4,114,930	-				+0.1
4,114,930	-				-0.7
4,114,939	+				+0.7
4,114,939	+				+1.4
4,114,939	+				+0.3
4,114,939	+				-0.1
4,114,939	+				+0.0
4,114,939	+				+0.7
4,114,940	-				+1.8
4,114,940	-				+2.1
4,114,940	-				+0.6
4,114,940	-				+0.1
4,114,940	-				+0.2
4,114,940	-				-0.0
4,114,966	+				+1.7
4,114,966	+				-0.6
4,114,966	+				+0.8
4,114,966	+				+0.3
4,114,967	-				+0.2
4,114,967	-				-0.6
4,114,974	+				-0.8
4,114,975	-				-2.3
4,114,978	+				+0.1
4,114,978	+				+0.9
4,114,978	+				+0.7
4,114,978	+				-3.1
4,114,978	+				-0.4
4,114,978	+				-1.7
4,114,978	+				-1.4
4,114,978	+				-1.2
4,114,978	+				+0.8
4,114,979	-				-0.7
4,114,979	-				+0.4
4,114,979	-				-0.0
4,114,979	-				-0.6
4,114,979	-				-0.6
4,114,979	-				+1.7
4,114,979	-				-1.5
4,114,979	-				-1.4
4,114,979	-				+0.1
4,114,979	-				-0.4
4,114,979	-				-0.7
4,114,983	+				-0.0
4,114,983	+				-0.4
4,114,983	+				-0.9
4,114,983	+				+1.4
4,114,983	+				-1.8
4,114,984	-				+0.0
4,114,984	-				+1.4
4,114,984	-				+0.6
4,114,984	-				-2.4
4,115,044	+				-0.1
4,115,044	+				-1.5
4,115,044	+				+1.7
4,115,044	+				-0.3
4,115,057	+				-1.2
4,115,057	+				-1.4
4,115,057	+				-0.6
4,115,057	+				-0.7
4,115,057	+				+0.3
4,115,057	+				-1.5
4,115,057	+				-0.4
4,115,057	+				-1.0
4,115,057	+				+0.2
4,115,057	+				+0.5
4,115,057	+				-1.7
4,115,057	+				-0.0
4,115,057	+				-1.9
4,115,057	+				+1.6
4,115,058	-				-1.6
4,115,058	-				+2.7
4,115,058	-				-0.4
4,115,058	-				-1.7
4,115,058	-				-2.7
4,115,059	-				+0.2
4,115,077	+				+1.2
4,115,077	+				+0.2
4,115,077	+				-1.7
4,115,077	+				-0.2
4,115,077	+				+0.8
4,115,077	+				+1.5
4,115,077	+				-1.7
4,115,078	-				-2.7
4,115,078	-				-0.4
4,115,078	-				+2.0
4,115,078	-				+1.6
4,115,127	+				+1.0
4,115,127	+				+1.0
4,115,127	+				-2.6
4,115,127	+				-3.9
4,115,127	+				+1.0
4,115,127	+				-2.7
4,115,128	-				+0.3
4,115,128	-				+0.3
4,115,128	-				-0.4
4,115,128	-				+4.8
4,115,128	-				-1.0
4,115,128	-				-1.5
4,115,201	+				+0.8
4,115,202	-				-2.1
4,115,209	+				+0.5
4,115,209	+				+0.4
4,115,209	+				+1.2
4,115,209	+				+0.3
4,115,210	-				-1.4
4,115,223	+				-0.2
4,115,223	+				-0.6
4,115,223	+				-0.0
4,115,223	+				+0.4
4,115,224	-				-2.2
4,115,224	-				+1.3
4,115,224	-				-1.3
4,115,240	+				+3.0
4,115,240	+				+0.6
4,115,240	+				-1.5
4,115,241	-				-2.0
4,115,241	-				-1.4
4,115,241	-				-0.0
4,115,247	+				-1.9
4,115,247	+				-0.0
4,115,247	+				-1.7
4,115,247	+				+0.6
4,115,247	+				+0.8
4,115,247	+				-1.1
4,115,247	+				-0.6
4,115,247	+				-0.2
4,115,248	-				-0.4
4,115,248	-				-2.1
4,115,248	-				+1.3
4,115,248	-				-0.7
4,115,248	-				-1.6
4,115,248	-				-0.8
4,115,248	-				-0.7
4,115,248	-				-3.1
4,115,248	-				-0.0
4,115,263	+				-1.1
4,115,263	+				+2.0
4,115,263	+				+0.3
4,115,263	+				+1.4
4,115,263	+				-0.6
4,115,263	+				-1.4
4,115,264	-				+2.2
4,115,264	-				-0.0
4,115,264	-				+0.6
4,115,264	-				-0.2
4,115,264	-				+1.2
4,115,270	-		Sama_3483	0.10	+1.1
4,115,270	-		Sama_3483	0.10	-1.2
4,115,270	-		Sama_3483	0.10	-0.1
4,115,270	-		Sama_3483	0.10	-0.4
4,115,292	+		Sama_3483	0.12	-1.3
4,115,292	+		Sama_3483	0.12	+0.6
4,115,293	-		Sama_3483	0.12	-1.3
4,115,293	-		Sama_3483	0.12	-1.0
4,115,293	-		Sama_3483	0.12	-0.1
4,115,293	-		Sama_3483	0.12	+0.9
4,115,302	+		Sama_3483	0.12	+0.8
4,115,302	+		Sama_3483	0.12	-0.7
4,115,302	+		Sama_3483	0.12	-0.4
4,115,303	-		Sama_3483	0.12	+1.0
4,115,303	-		Sama_3483	0.12	+0.2
4,115,303	-		Sama_3483	0.12	+3.5
4,115,408	+		Sama_3483	0.19	-0.2
4,115,408	+		Sama_3483	0.19	+2.6
4,115,409	-		Sama_3483	0.19	-0.0
4,115,409	-		Sama_3483	0.19	-1.0
4,115,409	-		Sama_3483	0.19	+1.3
4,115,499	+		Sama_3483	0.25	-0.2
4,115,500	-		Sama_3483	0.25	+2.5
4,115,500	-		Sama_3483	0.25	-0.6
4,115,500	-		Sama_3483	0.25	-0.2
4,115,505	+		Sama_3483	0.25	-1.6
4,115,506	-		Sama_3483	0.25	+1.3
4,115,506	-		Sama_3483	0.25	-1.3
4,115,506	-		Sama_3483	0.25	+0.4
4,115,506	-		Sama_3483	0.25	-0.4
4,115,529	+		Sama_3483	0.27	+1.1
4,115,529	+		Sama_3483	0.27	+1.8
4,115,529	+		Sama_3483	0.27	+1.5
4,115,530	-		Sama_3483	0.27	+2.3
4,115,530	-		Sama_3483	0.27	-2.6
4,115,530	-		Sama_3483	0.27	+1.3
4,115,530	-		Sama_3483	0.27	+1.4
4,115,543	+		Sama_3483	0.28	+0.9
4,115,582	-		Sama_3483	0.30	+0.9
4,115,589	+		Sama_3483	0.31	-2.4
4,115,589	+		Sama_3483	0.31	-0.0
4,115,589	+		Sama_3483	0.31	+0.1
4,115,590	-		Sama_3483	0.31	+0.7
4,115,590	-		Sama_3483	0.31	+1.6
4,115,590	-		Sama_3483	0.31	-1.0
4,115,590	-		Sama_3483	0.31	-2.1
4,115,590	-		Sama_3483	0.31	+1.2
4,115,607	-		Sama_3483	0.32	+0.6
4,115,607	-		Sama_3483	0.32	-0.0
4,115,723	+		Sama_3483	0.39	+0.7
4,115,723	+		Sama_3483	0.39	+0.7
4,115,723	+		Sama_3483	0.39	+0.2