Strain Fitness in Shewanella amazonensis SB2B around Sama_3471

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
4,099,802	+		Sama_3469	0.41	+0.1
4,099,803	-		Sama_3469	0.41	+0.9
4,100,048	+		Sama_3469	0.80	-1.2
4,100,048	+		Sama_3469	0.80	+0.3
4,100,048	+		Sama_3469	0.80	-0.9
4,100,049	-		Sama_3469	0.80	+1.7
4,100,107	+		Sama_3469	0.89	-0.8
4,100,107	+		Sama_3469	0.89	+3.6
4,100,108	-		Sama_3469	0.90	+2.0
4,100,108	-		Sama_3469	0.90	-1.6
4,100,108	-		Sama_3469	0.90	-0.6
4,100,108	-		Sama_3469	0.90	+1.5
4,100,136	-				+1.7
4,100,136	-				+2.3
4,100,142	+				-2.8
4,100,142	+				-0.2
4,100,143	-				-2.2
4,100,143	-				-2.0
4,100,171	+				+0.9
4,100,171	+				-0.3
4,100,172	-				-1.9
4,100,233	+		Sama_3470	0.20	+1.0
4,100,233	+		Sama_3470	0.20	+1.1
4,100,234	-		Sama_3470	0.21	-0.4
4,100,234	-		Sama_3470	0.21	-0.6
4,100,264	+		Sama_3470	0.31	+1.3
4,100,264	+		Sama_3470	0.31	-1.0
4,100,264	+		Sama_3470	0.31	+0.7
4,100,264	+		Sama_3470	0.31	-3.0
4,100,264	+		Sama_3470	0.31	-1.2
4,100,264	+		Sama_3470	0.31	-1.5
4,100,264	+		Sama_3470	0.31	-1.1
4,100,264	+		Sama_3470	0.31	-0.4
4,100,264	+		Sama_3470	0.31	-1.5
4,100,264	+		Sama_3470	0.31	-2.7
4,100,264	+		Sama_3470	0.31	-2.3
4,100,264	+		Sama_3470	0.31	+1.0
4,100,264	+		Sama_3470	0.31	+1.2
4,100,264	+		Sama_3470	0.31	-1.0
4,100,264	+		Sama_3470	0.31	+2.1
4,100,264	+		Sama_3470	0.31	+0.7
4,100,264	+		Sama_3470	0.31	-1.2
4,100,264	+		Sama_3470	0.31	+0.3
4,100,264	+		Sama_3470	0.31	+1.0
4,100,264	+		Sama_3470	0.31	+2.1
4,100,264	+		Sama_3470	0.31	-0.9
4,100,264	+		Sama_3470	0.31	-0.8
4,100,264	+		Sama_3470	0.31	-1.8
4,100,264	+		Sama_3470	0.31	-2.1
4,100,264	+		Sama_3470	0.31	-0.7
4,100,264	+		Sama_3470	0.31	+0.4
4,100,264	+		Sama_3470	0.31	-0.9
4,100,265	-		Sama_3470	0.31	+3.3
4,100,265	-		Sama_3470	0.31	+1.6
4,100,265	-		Sama_3470	0.31	+2.0
4,100,265	-		Sama_3470	0.31	-1.0
4,100,265	-		Sama_3470	0.31	-1.2
4,100,265	-		Sama_3470	0.31	+0.6
4,100,265	-		Sama_3470	0.31	-1.0
4,100,265	-		Sama_3470	0.31	-0.6
4,100,265	-		Sama_3470	0.31	+0.7
4,100,265	-		Sama_3470	0.31	+1.2
4,100,265	-		Sama_3470	0.31	-1.2
4,100,265	-		Sama_3470	0.31	-0.5
4,100,265	-		Sama_3470	0.31	+0.7
4,100,265	-		Sama_3470	0.31	+1.0
4,100,265	-		Sama_3470	0.31	-0.0
4,100,265	-		Sama_3470	0.31	-0.6
4,100,265	-		Sama_3470	0.31	-0.3
4,100,265	-		Sama_3470	0.31	+2.0
4,100,265	-		Sama_3470	0.31	-0.6
4,100,265	-		Sama_3470	0.31	-1.6
4,100,265	-		Sama_3470	0.31	-0.3
4,100,265	-		Sama_3470	0.31	-0.6
4,100,265	-		Sama_3470	0.31	-3.1
4,100,265	-		Sama_3470	0.31	+0.4
4,100,265	-		Sama_3470	0.31	+1.4
4,100,265	-		Sama_3470	0.31	-1.5
4,100,265	-		Sama_3470	0.31	-0.9
4,100,265	-		Sama_3470	0.31	+1.8
4,100,265	-		Sama_3470	0.31	+1.2
4,100,265	-		Sama_3470	0.31	-2.1
4,100,265	-		Sama_3470	0.31	-0.2
4,100,265	-		Sama_3470	0.31	+0.2
4,100,265	-		Sama_3470	0.31	+0.7
4,100,265	-		Sama_3470	0.31	-0.2
4,100,265	-		Sama_3470	0.31	+1.6
4,100,265	-		Sama_3470	0.31	+0.4
4,100,265	-		Sama_3470	0.31	-1.2
4,100,265	-		Sama_3470	0.31	-1.1
4,100,265	-		Sama_3470	0.31	-1.3
4,100,265	-		Sama_3470	0.31	-1.8
4,100,265	-		Sama_3470	0.31	-1.3
4,100,265	-		Sama_3470	0.31	+1.1
4,100,265	-		Sama_3470	0.31	+2.8
4,100,268	+		Sama_3470	0.32	-0.3
4,100,268	+		Sama_3470	0.32	-2.9
4,100,273	+		Sama_3470	0.34	+1.1
4,100,274	-		Sama_3470	0.34	+0.4
4,100,336	+		Sama_3470	0.55	+0.8
4,100,337	-		Sama_3470	0.56	-0.8
4,100,337	-		Sama_3470	0.56	+1.0
4,100,374	+		Sama_3470	0.68	-1.7
4,100,375	-		Sama_3470	0.69	+0.9
4,100,399	+		Sama_3470	0.77	-2.4
4,100,399	+		Sama_3470	0.77	+0.5
4,100,399	+		Sama_3470	0.77	+0.7
4,100,400	-		Sama_3470	0.77	-0.3
4,100,426	+		Sama_3470	0.86	-0.6
4,100,426	+		Sama_3470	0.86	-0.5
4,100,465	-				-1.0
4,100,516	-				-1.8
4,100,537	-				-1.6
4,100,551	+				+1.0
4,100,567	-				-1.2
4,100,598	-				-0.5
4,100,615	-		Sama_3471	0.11	-4.0
4,100,636	+		Sama_3471	0.15	-1.6
4,100,636	+		Sama_3471	0.15	-1.0
4,100,636	+		Sama_3471	0.15	-1.6
4,100,636	+		Sama_3471	0.15	+2.1
4,100,637	-		Sama_3471	0.15	-0.7
4,100,637	-		Sama_3471	0.15	-0.3
4,100,687	-		Sama_3471	0.24	-0.3
4,100,691	-		Sama_3471	0.24	-2.2
4,100,691	-		Sama_3471	0.24	-0.5
4,100,691	-		Sama_3471	0.24	+1.7
4,100,737	+		Sama_3471	0.33	+1.4
4,100,737	+		Sama_3471	0.33	-0.6
4,100,737	+		Sama_3471	0.33	-2.2
4,100,737	+		Sama_3471	0.33	+0.1
4,100,737	+		Sama_3471	0.33	-1.7
4,100,738	-		Sama_3471	0.33	-0.7
4,100,738	-		Sama_3471	0.33	-1.7
4,100,738	-		Sama_3471	0.33	+1.0
4,100,738	-		Sama_3471	0.33	-2.0
4,100,765	+		Sama_3471	0.38	-0.8
4,100,835	+		Sama_3471	0.50	-0.8
4,100,835	+		Sama_3471	0.50	+0.5
4,100,836	-		Sama_3471	0.50	+0.4
4,100,836	-		Sama_3471	0.50	-1.6
4,100,854	-		Sama_3471	0.53	-2.5
4,100,857	+		Sama_3471	0.54	+0.1
4,100,858	-		Sama_3471	0.54	+0.4
4,100,906	+		Sama_3471	0.63	+1.4
4,100,916	-		Sama_3471	0.64	-0.1
4,100,916	-		Sama_3471	0.64	-1.5
4,100,941	-		Sama_3471	0.69	-1.8
4,100,941	-		Sama_3471	0.69	-2.3
4,100,941	-		Sama_3471	0.69	-1.3
4,100,978	+		Sama_3471	0.75	-0.3
4,100,979	-		Sama_3471	0.76	-3.8
4,100,979	-		Sama_3471	0.76	-0.1
4,100,993	+		Sama_3471	0.78	+0.2
4,100,994	-		Sama_3471	0.78	-1.1
4,101,002	+		Sama_3471	0.80	+0.4
4,101,002	+		Sama_3471	0.80	+3.0
4,101,002	+		Sama_3471	0.80	-1.1
4,101,002	+		Sama_3471	0.80	-0.9
4,101,002	+		Sama_3471	0.80	+0.4
4,101,003	-		Sama_3471	0.80	-1.9
4,101,003	-		Sama_3471	0.80	+0.7
4,101,003	-		Sama_3471	0.80	+0.1
4,101,003	-		Sama_3471	0.80	-1.2
4,101,003	-		Sama_3471	0.80	-1.0
4,101,003	-		Sama_3471	0.80	-0.9
4,101,055	-		Sama_3471	0.89	+1.0
4,101,055	-		Sama_3471	0.89	-1.0
4,101,073	-				+0.0
4,101,073	-				-2.8
4,101,073	-				-0.7
4,101,073	-				+1.7
4,101,073	-				+0.2
4,101,099	+				-1.9
4,101,100	-				-0.3
4,101,122	+				-1.4
4,101,123	-				-0.3
4,101,123	-				-1.7
4,101,123	-				+0.1
4,101,143	+				-0.7
4,101,152	-				+0.4
4,101,154	+				+0.1
4,101,155	-				-0.3
4,101,162	+				+1.7
4,101,162	+				+0.6
4,101,163	-				-1.6
4,101,163	-				-1.1
4,101,163	-				-0.9
4,101,163	-				-1.7
4,101,165	+				-0.5
4,101,165	+				+2.0
4,101,165	+				-2.1
4,101,166	-				+0.4
4,101,166	-				-1.3
4,101,166	-				-1.3
4,101,166	-				-0.7
4,101,166	-				-0.8
4,101,170	+				-0.6
4,101,197	-				-0.6
4,101,209	-				-2.8
4,101,209	-				-0.8
4,101,210	+				-0.4
4,101,217	+				+0.6
4,101,218	-				-0.0
4,101,260	+				-3.2
4,101,261	-				+0.9
4,101,261	-				-0.8
4,101,293	+				+0.9
4,101,293	+				-1.8
4,101,294	-				-0.6
4,101,294	-				+0.9
4,101,301	+				+0.4
4,101,302	-				+0.6
4,101,306	+				+2.1
4,101,306	+				-2.0
4,101,306	+				-2.0
4,101,307	-				+0.0
4,101,307	-				-1.5
4,101,307	-				+0.4
4,101,307	-				+1.9
4,101,307	-				+1.0
4,101,346	+				-3.3
4,101,346	+				+0.6
4,101,346	+				-1.9
4,101,346	+				-0.3
4,101,347	-				+1.0
4,101,347	-				-0.4
4,101,347	-				-1.0
4,101,347	-				-0.8
4,101,347	-				+2.4
4,101,347	-				-0.8
4,101,363	+				-0.8
4,101,363	+				+0.1
4,101,363	+				-0.4
4,101,364	-				-1.3
4,101,379	-				+0.2
4,101,379	-				-1.7
4,101,391	-				+1.6
4,101,448	-				+1.0
4,101,510	+				-1.5
4,101,510	+				-3.1
4,101,511	-				+0.2
4,101,511	-				+0.3
4,101,511	-				+1.2
4,101,511	-				+2.0
4,101,529	-				+0.6
4,101,545	+				-1.5
4,101,546	-				-0.5
4,101,559	+				+2.1
4,101,559	+				+0.5
4,101,559	+				+2.1
4,101,559	+				+0.4
4,101,559	+				-1.3
4,101,559	+				-1.4
4,101,560	-				-2.5
4,101,560	-				+0.9
4,101,577	+				+0.7
4,101,578	-				+0.3
4,101,578	-				-0.8
4,101,578	-				-0.6
4,101,591	+				-0.8
4,101,591	+				+0.3
4,101,591	+				+0.6
4,101,591	+				+2.3
4,101,591	+				+1.2
4,101,591	+				+3.2
4,101,591	+				+1.8
4,101,592	-				-2.6
4,101,592	-				+0.1
4,101,592	-				-1.3
4,101,592	-				+0.8
4,101,592	-				+0.4
4,101,592	-				+0.7
4,101,592	-				+0.4
4,101,592	-				+0.7
4,101,592	-				-0.3
4,101,592	-				+0.6
4,101,592	-				+0.9
4,101,609	+				+1.6
4,101,630	+				-0.4
4,101,630	+				-2.6
4,101,630	+				+2.1
4,101,683	+		Sama_3472	0.20	-1.2
4,101,683	+		Sama_3472	0.20	-1.2
4,101,684	-		Sama_3472	0.20	-3.3
4,101,684	-		Sama_3472	0.20	-1.6
4,101,684	-		Sama_3472	0.20	-0.8
4,101,684	-		Sama_3472	0.20	-0.0
4,101,708	+		Sama_3472	0.26	-0.0
4,101,708	+		Sama_3472	0.26	+0.2
4,101,708	+		Sama_3472	0.26	+0.7
4,101,708	+		Sama_3472	0.26	+0.7
4,101,709	-		Sama_3472	0.26	+1.6
4,101,709	-		Sama_3472	0.26	-0.6
4,101,826	-		Sama_3472	0.52	+0.3
4,101,826	-		Sama_3472	0.52	-0.3
4,101,864	+		Sama_3472	0.60	+0.3
4,101,865	-		Sama_3472	0.61	-0.6
4,101,865	-		Sama_3472	0.61	+1.7
4,101,913	+		Sama_3472	0.71	+0.9
4,101,913	+		Sama_3472	0.71	+1.8
4,101,914	-		Sama_3472	0.72	-1.0
4,101,914	-		Sama_3472	0.72	-0.3
4,101,914	-		Sama_3472	0.72	+0.4
4,102,026	-				+2.8
4,102,026	-				+3.9
4,102,044	-				+0.3
4,102,044	-				-2.1
4,102,044	-				+1.7
4,102,045	+				+1.1
4,102,045	+				-0.2
4,102,045	+				-1.2
4,102,045	+				+1.4
4,102,045	+				-2.3
4,102,045	+				+1.1
4,102,046	-				+0.8
4,102,046	-				+0.4
4,102,046	-				+2.8
4,102,046	-				-0.6
4,102,091	+				+1.0
4,102,091	+				+0.7
4,102,091	+				-3.7
4,102,091	+				-1.1
4,102,091	+				+1.5
4,102,091	+				+2.3
4,102,092	-				+2.2
4,102,092	-				-0.8
4,102,092	-				-0.1
4,102,092	-				+0.7
4,102,092	-				-0.6
4,102,092	-				-3.2
4,102,092	-				-0.1
4,102,092	-				-0.0
4,102,097	+				+1.0
4,102,098	-				-1.9
4,102,098	-				-1.9
4,102,098	-				-1.2