Strain Fitness in Shewanella amazonensis SB2B around Sama_3405

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
4,030,360	+	rbn	Sama_3404	0.14	-0.9
4,030,360	+	rbn	Sama_3404	0.14	-1.2
4,030,360	+	rbn	Sama_3404	0.14	+0.8
4,030,361	-	rbn	Sama_3404	0.14	-1.6
4,030,361	-	rbn	Sama_3404	0.14	+1.0
4,030,369	+	rbn	Sama_3404	0.15	-1.5
4,030,410	+	rbn	Sama_3404	0.20	+0.2
4,030,410	+	rbn	Sama_3404	0.20	+0.8
4,030,411	-	rbn	Sama_3404	0.20	-1.1
4,030,411	-	rbn	Sama_3404	0.20	-1.0
4,030,411	-	rbn	Sama_3404	0.20	-0.9
4,030,411	-	rbn	Sama_3404	0.20	-1.9
4,030,411	-	rbn	Sama_3404	0.20	-1.3
4,030,411	-	rbn	Sama_3404	0.20	-1.0
4,030,411	-	rbn	Sama_3404	0.20	-0.1
4,030,426	+	rbn	Sama_3404	0.21	+0.4
4,030,426	+	rbn	Sama_3404	0.21	-1.4
4,030,426	+	rbn	Sama_3404	0.21	+2.7
4,030,426	+	rbn	Sama_3404	0.21	+1.0
4,030,426	+	rbn	Sama_3404	0.21	-0.6
4,030,426	+	rbn	Sama_3404	0.21	+2.8
4,030,426	+	rbn	Sama_3404	0.21	-1.6
4,030,426	+	rbn	Sama_3404	0.21	+0.5
4,030,426	+	rbn	Sama_3404	0.21	-0.2
4,030,427	-	rbn	Sama_3404	0.22	+1.8
4,030,427	-	rbn	Sama_3404	0.22	-0.9
4,030,427	-	rbn	Sama_3404	0.22	-0.6
4,030,427	-	rbn	Sama_3404	0.22	+1.7
4,030,427	-	rbn	Sama_3404	0.22	-1.4
4,030,427	-	rbn	Sama_3404	0.22	+0.6
4,030,427	-	rbn	Sama_3404	0.22	-2.5
4,030,427	-	rbn	Sama_3404	0.22	+0.6
4,030,468	+	rbn	Sama_3404	0.26	-1.1
4,030,469	-	rbn	Sama_3404	0.26	+1.0
4,030,469	-	rbn	Sama_3404	0.26	+0.1
4,030,469	-	rbn	Sama_3404	0.26	-0.9
4,030,469	-	rbn	Sama_3404	0.26	-1.0
4,030,469	-	rbn	Sama_3404	0.26	+0.6
4,030,480	+	rbn	Sama_3404	0.27	-2.0
4,030,481	-	rbn	Sama_3404	0.28	+1.7
4,030,501	+	rbn	Sama_3404	0.30	+0.4
4,030,501	+	rbn	Sama_3404	0.30	+2.0
4,030,501	+	rbn	Sama_3404	0.30	-2.7
4,030,501	+	rbn	Sama_3404	0.30	+1.0
4,030,501	+	rbn	Sama_3404	0.30	-0.8
4,030,501	+	rbn	Sama_3404	0.30	+4.0
4,030,501	+	rbn	Sama_3404	0.30	-1.8
4,030,501	+	rbn	Sama_3404	0.30	-0.9
4,030,502	-	rbn	Sama_3404	0.30	+0.6
4,030,502	-	rbn	Sama_3404	0.30	-1.7
4,030,502	-	rbn	Sama_3404	0.30	-0.8
4,030,502	-	rbn	Sama_3404	0.30	-0.5
4,030,502	-	rbn	Sama_3404	0.30	+0.7
4,030,502	-	rbn	Sama_3404	0.30	-0.4
4,030,502	-	rbn	Sama_3404	0.30	-1.0
4,030,502	-	rbn	Sama_3404	0.30	-1.5
4,030,601	+	rbn	Sama_3404	0.41	+1.1
4,030,602	-	rbn	Sama_3404	0.41	-2.1
4,030,603	+	rbn	Sama_3404	0.41	-2.0
4,030,603	+	rbn	Sama_3404	0.41	-3.6
4,030,603	+	rbn	Sama_3404	0.41	-0.0
4,030,603	+	rbn	Sama_3404	0.41	-0.6
4,030,603	+	rbn	Sama_3404	0.41	-0.0
4,030,603	+	rbn	Sama_3404	0.41	-1.4
4,030,603	+	rbn	Sama_3404	0.41	-0.6
4,030,603	+	rbn	Sama_3404	0.41	+0.1
4,030,603	+	rbn	Sama_3404	0.41	-0.0
4,030,603	+	rbn	Sama_3404	0.41	+0.1
4,030,603	+	rbn	Sama_3404	0.41	-0.8
4,030,603	+	rbn	Sama_3404	0.41	+0.1
4,030,603	+	rbn	Sama_3404	0.41	+0.4
4,030,603	+	rbn	Sama_3404	0.41	-0.4
4,030,603	+	rbn	Sama_3404	0.41	-1.0
4,030,604	-	rbn	Sama_3404	0.41	-0.1
4,030,604	-	rbn	Sama_3404	0.41	+1.2
4,030,604	-	rbn	Sama_3404	0.41	-1.0
4,030,604	-	rbn	Sama_3404	0.41	-1.8
4,030,604	-	rbn	Sama_3404	0.41	-1.0
4,030,604	-	rbn	Sama_3404	0.41	-1.0
4,030,604	-	rbn	Sama_3404	0.41	+1.3
4,030,604	-	rbn	Sama_3404	0.41	-2.0
4,030,604	-	rbn	Sama_3404	0.41	-1.2
4,030,604	-	rbn	Sama_3404	0.41	-0.8
4,030,604	-	rbn	Sama_3404	0.41	-1.2
4,030,604	-	rbn	Sama_3404	0.41	+0.8
4,030,604	-	rbn	Sama_3404	0.41	-1.0
4,030,651	-	rbn	Sama_3404	0.46	-0.8
4,030,651	-	rbn	Sama_3404	0.46	+0.7
4,030,672	+	rbn	Sama_3404	0.48	+0.7
4,030,673	-	rbn	Sama_3404	0.49	-0.4
4,030,673	-	rbn	Sama_3404	0.49	-0.6
4,030,673	-	rbn	Sama_3404	0.49	-2.4
4,030,673	-	rbn	Sama_3404	0.49	-0.9
4,030,673	-	rbn	Sama_3404	0.49	-1.2
4,030,673	-	rbn	Sama_3404	0.49	+1.1
4,030,692	+	rbn	Sama_3404	0.51	-1.6
4,030,692	+	rbn	Sama_3404	0.51	-0.4
4,030,692	+	rbn	Sama_3404	0.51	+1.8
4,030,693	-	rbn	Sama_3404	0.51	-0.6
4,030,711	+	rbn	Sama_3404	0.53	+0.5
4,030,712	-	rbn	Sama_3404	0.53	+2.0
4,030,712	-	rbn	Sama_3404	0.53	-0.6
4,030,712	-	rbn	Sama_3404	0.53	+1.9
4,030,712	-	rbn	Sama_3404	0.53	-0.8
4,030,712	-	rbn	Sama_3404	0.53	-0.2
4,030,712	-	rbn	Sama_3404	0.53	+1.4
4,030,712	-	rbn	Sama_3404	0.53	+0.7
4,030,727	+	rbn	Sama_3404	0.54	-0.6
4,030,728	-	rbn	Sama_3404	0.55	+1.3
4,030,728	-	rbn	Sama_3404	0.55	-0.6
4,030,728	-	rbn	Sama_3404	0.55	-1.8
4,030,771	+	rbn	Sama_3404	0.59	+0.7
4,030,771	+	rbn	Sama_3404	0.59	+2.7
4,030,771	+	rbn	Sama_3404	0.59	+0.7
4,030,771	+	rbn	Sama_3404	0.59	-3.3
4,030,771	+	rbn	Sama_3404	0.59	-0.5
4,030,771	+	rbn	Sama_3404	0.59	+0.1
4,030,772	-	rbn	Sama_3404	0.59	-0.0
4,030,772	-	rbn	Sama_3404	0.59	+1.5
4,030,772	-	rbn	Sama_3404	0.59	-0.4
4,030,772	-	rbn	Sama_3404	0.59	-0.6
4,030,772	-	rbn	Sama_3404	0.59	+0.6
4,030,772	-	rbn	Sama_3404	0.59	-0.6
4,030,772	-	rbn	Sama_3404	0.59	-1.4
4,030,772	-	rbn	Sama_3404	0.59	-0.3
4,030,790	+	rbn	Sama_3404	0.61	-0.4
4,030,790	+	rbn	Sama_3404	0.61	-0.1
4,030,791	-	rbn	Sama_3404	0.62	-1.2
4,030,791	-	rbn	Sama_3404	0.62	+1.1
4,030,791	-	rbn	Sama_3404	0.62	+0.8
4,030,791	-	rbn	Sama_3404	0.62	-0.5
4,030,835	+	rbn	Sama_3404	0.66	-1.0
4,030,835	+	rbn	Sama_3404	0.66	-0.9
4,030,835	+	rbn	Sama_3404	0.66	+1.1
4,030,835	+	rbn	Sama_3404	0.66	-1.1
4,030,835	+	rbn	Sama_3404	0.66	+2.4
4,030,836	-	rbn	Sama_3404	0.66	+0.1
4,030,836	-	rbn	Sama_3404	0.66	-1.4
4,030,866	+	rbn	Sama_3404	0.70	-0.0
4,030,866	+	rbn	Sama_3404	0.70	+1.3
4,030,866	+	rbn	Sama_3404	0.70	-0.9
4,030,867	-	rbn	Sama_3404	0.70	-0.6
4,030,867	-	rbn	Sama_3404	0.70	+2.0
4,030,867	-	rbn	Sama_3404	0.70	-1.0
4,030,867	-	rbn	Sama_3404	0.70	+1.3
4,030,929	-	rbn	Sama_3404	0.77	-1.7
4,030,930	+	rbn	Sama_3404	0.77	-0.6
4,030,930	+	rbn	Sama_3404	0.77	-3.7
4,030,930	+	rbn	Sama_3404	0.77	+1.2
4,030,930	+	rbn	Sama_3404	0.77	-1.5
4,030,930	+	rbn	Sama_3404	0.77	+1.1
4,030,930	+	rbn	Sama_3404	0.77	-1.7
4,030,930	+	rbn	Sama_3404	0.77	+0.5
4,030,930	+	rbn	Sama_3404	0.77	-1.9
4,030,930	+	rbn	Sama_3404	0.77	-0.1
4,030,930	+	rbn	Sama_3404	0.77	+0.8
4,030,930	+	rbn	Sama_3404	0.77	-0.9
4,030,930	+	rbn	Sama_3404	0.77	+0.0
4,030,930	+	rbn	Sama_3404	0.77	-1.6
4,030,930	+	rbn	Sama_3404	0.77	-0.4
4,030,930	+	rbn	Sama_3404	0.77	-0.6
4,030,930	+	rbn	Sama_3404	0.77	-1.1
4,030,931	-	rbn	Sama_3404	0.77	+0.8
4,030,931	-	rbn	Sama_3404	0.77	+1.1
4,030,931	-	rbn	Sama_3404	0.77	-0.6
4,030,931	-	rbn	Sama_3404	0.77	+1.0
4,030,931	-	rbn	Sama_3404	0.77	-1.8
4,030,931	-	rbn	Sama_3404	0.77	+0.2
4,030,931	-	rbn	Sama_3404	0.77	+0.3
4,030,931	-	rbn	Sama_3404	0.77	+0.8
4,030,931	-	rbn	Sama_3404	0.77	+3.7
4,030,931	-	rbn	Sama_3404	0.77	-1.2
4,030,931	-	rbn	Sama_3404	0.77	+0.7
4,030,931	-	rbn	Sama_3404	0.77	+2.1
4,030,931	-	rbn	Sama_3404	0.77	-1.0
4,030,931	-	rbn	Sama_3404	0.77	-0.9
4,030,931	-	rbn	Sama_3404	0.77	+0.3
4,030,938	+	rbn	Sama_3404	0.78	-0.0
4,030,938	+	rbn	Sama_3404	0.78	-0.0
4,030,938	+	rbn	Sama_3404	0.78	+1.0
4,030,938	+	rbn	Sama_3404	0.78	+0.5
4,030,939	-	rbn	Sama_3404	0.78	-0.4
4,030,939	-	rbn	Sama_3404	0.78	+0.5
4,030,986	+	rbn	Sama_3404	0.83	-1.5
4,030,986	+	rbn	Sama_3404	0.83	-1.4
4,030,986	+	rbn	Sama_3404	0.83	-2.9
4,030,987	-	rbn	Sama_3404	0.83	-0.6
4,030,987	-	rbn	Sama_3404	0.83	-0.5
4,030,987	-	rbn	Sama_3404	0.83	+2.1
4,030,987	-	rbn	Sama_3404	0.83	+2.3
4,030,987	-	rbn	Sama_3404	0.83	+1.0
4,031,025	+	rbn	Sama_3404	0.87	-0.6
4,031,028	+	rbn	Sama_3404	0.88	-1.0
4,031,028	+	rbn	Sama_3404	0.88	+0.0
4,031,028	+	rbn	Sama_3404	0.88	-1.0
4,031,028	+	rbn	Sama_3404	0.88	-2.2
4,031,028	+	rbn	Sama_3404	0.88	-0.6
4,031,029	-	rbn	Sama_3404	0.88	+3.7
4,031,029	-	rbn	Sama_3404	0.88	+1.6
4,031,077	+				+0.9
4,031,077	+				+1.8
4,031,077	+				-1.2
4,031,077	+				-0.8
4,031,077	+				-0.4
4,031,077	+				-1.6
4,031,077	+				-0.1
4,031,077	+				-0.4
4,031,077	+				-0.9
4,031,077	+				-1.0
4,031,077	+				+1.8
4,031,077	+				-0.0
4,031,077	+				+2.2
4,031,078	-				+0.8
4,031,078	-				-2.9
4,031,078	-				-0.9
4,031,078	-				+2.2
4,031,078	-				-2.5
4,031,078	-				+0.5
4,031,078	-				-0.2
4,031,078	-				+0.5
4,031,081	+				-1.0
4,031,081	+				+4.2
4,031,081	+				-0.6
4,031,081	+				-0.7
4,031,081	+				-0.4
4,031,081	+				+1.7
4,031,081	+				+0.1
4,031,081	+				-3.0
4,031,081	+				+0.4
4,031,082	-				-1.4
4,031,082	-				+0.4
4,031,082	-				-2.8
4,031,082	-				+1.5
4,031,082	-				+0.4
4,031,082	-				+0.6
4,031,082	-				+1.1
4,031,082	-				-1.4
4,031,082	-				+1.5
4,031,082	-				-0.7
4,031,082	-				-1.7
4,031,102	+				+2.1
4,031,103	-				-1.4
4,031,172	+				+1.6
4,031,172	+				-0.9
4,031,172	+				-0.6
4,031,173	-				+0.6
4,031,173	-				+1.4
4,031,173	-				+1.8
4,031,187	+				-0.1
4,031,187	+				-2.9
4,031,187	+				+0.9
4,031,187	+				-0.9
4,031,187	+				-1.0
4,031,187	+				-0.2
4,031,188	-				+0.3
4,031,188	-				-0.8
4,031,192	+				-0.9
4,031,229	+				+1.5
4,031,230	-				+3.0
4,031,236	+				-0.3
4,031,236	+				-1.8
4,031,236	+				+0.1
4,031,236	+				+0.1
4,031,237	-				-1.4
4,031,237	-				-0.4
4,031,237	-				-1.0
4,031,237	-				-0.9
4,031,244	+				-1.2
4,031,244	+				+0.1
4,031,244	+				-3.3
4,031,249	+				+0.7
4,031,249	+				-0.2
4,031,250	-				-2.8
4,031,250	-				+1.0
4,031,250	-				-2.4
4,031,250	-				-1.0
4,031,256	+				+2.0
4,031,256	+				-1.6
4,031,256	+				+1.1
4,031,256	+				+0.1
4,031,257	-				-1.5
4,031,257	-				-2.3
4,031,261	+				+0.8
4,031,261	+				+0.7
4,031,261	+				-2.2
4,031,261	+				-1.0
4,031,261	+				-0.8
4,031,261	+				-1.1
4,031,261	+				+0.2
4,031,262	-				+0.4
4,031,262	-				-0.8
4,031,270	+				-1.0
4,031,270	+				+1.2
4,031,271	-				-0.8
4,031,271	-				+0.0
4,031,271	-				+0.6
4,031,279	+				+1.5
4,031,279	+				+0.8
4,031,280	-				+0.7
4,031,280	-				-1.1
4,031,280	-				-1.4
4,031,380	+		Sama_3405	0.39	+1.0
4,031,380	+		Sama_3405	0.39	+0.4
4,031,380	+		Sama_3405	0.39	+1.6
4,031,381	-		Sama_3405	0.39	+2.6
4,031,381	-		Sama_3405	0.39	+0.6
4,031,381	-		Sama_3405	0.39	-1.1
4,031,381	-		Sama_3405	0.39	-0.9
4,031,381	-		Sama_3405	0.39	-0.4
4,031,381	-		Sama_3405	0.39	-1.6
4,031,383	+		Sama_3405	0.40	-1.2
4,031,383	+		Sama_3405	0.40	-2.9
4,031,383	+		Sama_3405	0.40	+0.3
4,031,384	-		Sama_3405	0.41	-0.9
4,031,384	-		Sama_3405	0.41	-0.7
4,031,407	+		Sama_3405	0.51	+0.3
4,031,457	+		Sama_3405	0.73	+0.1
4,031,457	+		Sama_3405	0.73	+0.4
4,031,457	+		Sama_3405	0.73	-0.5
4,031,458	-		Sama_3405	0.74	-0.9
4,031,458	-		Sama_3405	0.74	-0.2
4,031,458	-		Sama_3405	0.74	+2.1
4,031,458	-		Sama_3405	0.74	-0.6
4,031,504	-				+0.1
4,031,573	+				-1.1
4,031,573	+				+0.0
4,031,574	-				-1.5
4,031,574	-				-0.9
4,031,574	-				+0.1
4,031,574	-				-0.0
4,031,574	-				-1.9
4,031,599	+		Sama_3406	0.10	-1.4
4,031,599	+		Sama_3406	0.10	-0.6
4,031,600	-		Sama_3406	0.10	+0.4
4,031,600	-		Sama_3406	0.10	+0.4
4,031,600	-		Sama_3406	0.10	-1.8
4,031,600	-		Sama_3406	0.10	-2.1
4,031,600	-		Sama_3406	0.10	-0.0
4,031,602	+		Sama_3406	0.11	-1.4
4,031,603	-		Sama_3406	0.11	+1.4
4,031,603	-		Sama_3406	0.11	+0.1
4,031,603	-		Sama_3406	0.11	+2.0
4,031,626	+		Sama_3406	0.14	+3.0
4,031,764	+		Sama_3406	0.35	+0.4
4,031,764	+		Sama_3406	0.35	-0.6
4,031,764	+		Sama_3406	0.35	+1.0
4,031,764	+		Sama_3406	0.35	-0.9
4,031,765	-		Sama_3406	0.35	+0.5
4,031,785	+		Sama_3406	0.39	-1.4
4,031,816	+		Sama_3406	0.43	-0.8
4,031,816	+		Sama_3406	0.43	+0.2
4,031,816	+		Sama_3406	0.43	-0.2
4,031,816	+		Sama_3406	0.43	+0.6
4,031,816	+		Sama_3406	0.43	-1.0
4,031,816	+		Sama_3406	0.43	-1.0
4,031,817	-		Sama_3406	0.43	+1.0
4,031,846	+		Sama_3406	0.48	+0.9
4,031,846	+		Sama_3406	0.48	+0.5
4,031,950	+		Sama_3406	0.64	-0.5
4,031,951	-		Sama_3406	0.64	+1.5
4,031,951	-		Sama_3406	0.64	-1.0
4,031,951	-		Sama_3406	0.64	-0.6
4,031,951	-		Sama_3406	0.64	+0.3
4,032,002	+		Sama_3406	0.72	+0.0
4,032,084	+		Sama_3406	0.84	-1.2
4,032,084	+		Sama_3406	0.84	+0.7
4,032,085	-		Sama_3406	0.84	-0.0
4,032,085	-		Sama_3406	0.84	+0.4
4,032,105	-		Sama_3406	0.87	-0.0
4,032,105	-		Sama_3406	0.87	+0.0
4,032,105	-		Sama_3406	0.87	-0.7
4,032,105	-		Sama_3406	0.87	+0.5
4,032,151	-				+1.0
4,032,151	-				+1.0
4,032,156	+				-2.4
4,032,184	+				-0.0
4,032,191	-				-1.0
4,032,203	+				-0.9
4,032,203	+				+1.1
4,032,203	+				-0.4
4,032,203	+				+0.1
4,032,203	+				+1.2
4,032,203	+				+2.5
4,032,203	+				+0.8
4,032,203	+				+1.0
4,032,203	+				-0.7
4,032,204	-				-0.4
4,032,204	-				+1.0
4,032,204	-				-2.3
4,032,208	+				-0.9
4,032,208	+				-1.6
4,032,208	+				-2.9
4,032,208	+				+1.6
4,032,209	-				-1.7
4,032,209	-				-0.2
4,032,210	-				-0.4
4,032,287	+				+1.2
4,032,287	+				-1.0
4,032,287	+				+1.5
4,032,287	+				-1.9
4,032,287	+				-1.9
4,032,287	+				-0.9
4,032,288	-				-1.9
4,032,328	+				+1.4
4,032,399	+		Sama_3407	0.17	-3.1
4,032,400	-		Sama_3407	0.17	-0.3
4,032,447	+		Sama_3407	0.22	+2.0
4,032,447	+		Sama_3407	0.22	-0.9
4,032,448	-		Sama_3407	0.22	+1.1
4,032,467	+		Sama_3407	0.24	-1.6
4,032,468	-		Sama_3407	0.25	-2.6
4,032,468	-		Sama_3407	0.25	-2.0
4,032,468	-		Sama_3407	0.25	-1.4
4,032,472	+		Sama_3407	0.25	-1.0
4,032,472	+		Sama_3407	0.25	+0.7
4,032,472	+		Sama_3407	0.25	+1.5
4,032,473	-		Sama_3407	0.25	-3.0
4,032,473	-		Sama_3407	0.25	+0.1
4,032,473	-		Sama_3407	0.25	-2.2
4,032,473	-		Sama_3407	0.25	-1.1
4,032,495	+		Sama_3407	0.28	-0.5
4,032,495	+		Sama_3407	0.28	-2.8
4,032,496	-		Sama_3407	0.28	+0.8
4,032,496	-		Sama_3407	0.28	+2.0
4,032,496	-		Sama_3407	0.28	+2.2
4,032,496	-		Sama_3407	0.28	+3.0
4,032,496	-		Sama_3407	0.28	-2.2