Strain Fitness in Shewanella amazonensis SB2B around Sama_3321

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,949,048	+				-1.2
3,949,064	+				+1.5
3,949,065	-				-2.1
3,949,118	+				-0.3
3,949,119	-				-1.8
3,949,119	-				+0.2
3,949,119	-				-0.0
3,949,121	+				-0.1
3,949,121	+				-2.5
3,949,121	+				-0.2
3,949,121	+				-0.3
3,949,121	+				-1.3
3,949,122	-				-0.3
3,949,128	-				-0.9
3,949,205	+				-0.9
3,949,205	+				+0.6
3,949,205	+				-2.6
3,949,206	-				-0.5
3,949,323	+		Sama_3319	0.64	-1.7
3,949,323	+		Sama_3319	0.64	-0.2
3,949,323	+		Sama_3319	0.64	-0.7
3,949,324	-		Sama_3319	0.65	-1.3
3,949,324	-		Sama_3319	0.65	-1.0
3,949,324	-		Sama_3319	0.65	+2.4
3,949,324	-		Sama_3319	0.65	-0.1
3,949,398	+				-0.3
3,949,398	+				+0.5
3,949,398	+				-2.0
3,949,398	+				-0.5
3,949,398	+				-0.1
3,949,399	-				-0.9
3,949,399	-				+0.3
3,949,399	-				-0.5
3,949,399	-				-0.7
3,949,399	-				-2.0
3,949,433	+		Sama_3320	0.13	+0.8
3,949,433	+		Sama_3320	0.13	-0.4
3,949,433	+		Sama_3320	0.13	+0.1
3,949,433	+		Sama_3320	0.13	+1.2
3,949,433	+		Sama_3320	0.13	+0.6
3,949,434	-		Sama_3320	0.14	-0.0
3,949,434	-		Sama_3320	0.14	+0.2
3,949,434	-		Sama_3320	0.14	-0.2
3,949,434	-		Sama_3320	0.14	-1.1
3,949,434	-		Sama_3320	0.14	-2.4
3,949,436	+		Sama_3320	0.14	-2.9
3,949,436	+		Sama_3320	0.14	+0.3
3,949,436	+		Sama_3320	0.14	+0.5
3,949,466	-		Sama_3320	0.27	-0.3
3,949,593	+		Sama_3320	0.78	-1.5
3,949,593	+		Sama_3320	0.78	+0.1
3,949,593	+		Sama_3320	0.78	-1.0
3,949,593	+		Sama_3320	0.78	-1.3
3,949,593	+		Sama_3320	0.78	+0.6
3,949,593	+		Sama_3320	0.78	+1.6
3,949,593	+		Sama_3320	0.78	-0.9
3,949,593	+		Sama_3320	0.78	+0.8
3,949,593	+		Sama_3320	0.78	-1.1
3,949,594	-		Sama_3320	0.78	-0.2
3,949,594	-		Sama_3320	0.78	-2.7
3,949,594	-		Sama_3320	0.78	-0.2
3,949,594	-		Sama_3320	0.78	-1.0
3,949,594	-		Sama_3320	0.78	+0.4
3,949,594	-		Sama_3320	0.78	+1.9
3,949,594	-		Sama_3320	0.78	-3.6
3,949,594	-		Sama_3320	0.78	-1.1
3,949,594	-		Sama_3320	0.78	-1.1
3,949,594	-		Sama_3320	0.78	+0.7
3,949,626	-				+1.4
3,949,633	+				-2.2
3,949,633	+				+3.2
3,949,639	+				+1.9
3,949,639	+				+0.1
3,949,640	-				+0.5
3,949,640	-				+0.2
3,949,690	-				-0.6
3,949,723	-				+0.1
3,949,726	+				+1.2
3,949,726	+				-1.0
3,949,726	+				-0.1
3,949,726	+				-0.7
3,949,726	+				-0.2
3,949,739	+				-1.0
3,949,739	+				+3.1
3,949,758	+				+0.3
3,949,758	+				+0.2
3,949,805	+				+6.3
3,949,805	+				+2.5
3,949,805	+				+3.4
3,949,825	+				+1.1
3,950,022	-				+1.2
3,950,022	-				+1.5
3,950,049	-				-0.1
3,950,071	+		Sama_3321	0.12	-0.2
3,950,072	-		Sama_3321	0.12	-2.0
3,950,072	-		Sama_3321	0.12	-1.1
3,950,072	-		Sama_3321	0.12	+0.3
3,950,078	+		Sama_3321	0.13	+1.0
3,950,078	+		Sama_3321	0.13	+2.4
3,950,078	+		Sama_3321	0.13	-0.8
3,950,079	-		Sama_3321	0.13	+0.6
3,950,079	-		Sama_3321	0.13	+1.4
3,950,079	-		Sama_3321	0.13	+1.3
3,950,079	-		Sama_3321	0.13	+0.7
3,950,166	+		Sama_3321	0.27	+1.3
3,950,167	-		Sama_3321	0.27	-0.9
3,950,167	-		Sama_3321	0.27	+2.9
3,950,167	-		Sama_3321	0.27	+3.2
3,950,167	-		Sama_3321	0.27	+2.0
3,950,167	-		Sama_3321	0.27	+0.5
3,950,450	+		Sama_3321	0.73	+1.2
3,950,451	-		Sama_3321	0.73	+0.6
3,950,451	-		Sama_3321	0.73	+1.7
3,950,465	+		Sama_3321	0.76	+0.7
3,950,466	-		Sama_3321	0.76	+4.2
3,950,528	+		Sama_3321	0.86	+0.2
3,950,528	+		Sama_3321	0.86	+2.1
3,950,528	+		Sama_3321	0.86	+0.3
3,950,529	-		Sama_3321	0.86	+0.9
3,950,529	-		Sama_3321	0.86	-0.4
3,950,616	+				+2.8
3,950,617	-				+1.3
3,950,617	-				-1.1
3,950,628	+				+2.2
3,950,629	-				-0.1
3,950,666	+				+0.8
3,950,671	+				+0.3
3,950,672	-				-0.3
3,950,672	-				+0.1
3,950,672	-				-0.5
3,950,672	-				-2.2
3,950,672	-				-0.9
3,950,674	+				+0.9
3,950,675	-				+0.0
3,950,702	+				+0.6
3,950,702	+				+0.6
3,950,703	-				-2.5
3,950,703	-				-2.1
3,950,703	-				+0.8
3,950,719	-				+1.0
3,950,808	+				+0.5
3,950,808	+				-0.4
3,950,808	+				-2.8
3,950,809	-				+0.1
3,950,809	-				+0.2
3,950,835	+		Sama_3322	0.11	+1.2
3,950,835	+		Sama_3322	0.11	+1.8
3,950,836	-		Sama_3322	0.11	-2.1
3,950,836	-		Sama_3322	0.11	-1.2
3,950,836	-		Sama_3322	0.11	+2.1
3,950,836	-		Sama_3322	0.11	+1.2
3,950,836	-		Sama_3322	0.11	+0.2
3,950,836	-		Sama_3322	0.11	+0.1
3,950,893	+		Sama_3322	0.17	-0.2
3,950,893	+		Sama_3322	0.17	+0.9
3,950,894	-		Sama_3322	0.17	-1.1
3,950,894	-		Sama_3322	0.17	-0.9
3,950,894	-		Sama_3322	0.17	-1.2
3,950,894	-		Sama_3322	0.17	+0.2
3,950,915	+		Sama_3322	0.19	+0.7
3,950,915	+		Sama_3322	0.19	-1.9
3,950,915	+		Sama_3322	0.19	-1.5
3,950,915	+		Sama_3322	0.19	+1.8
3,950,915	+		Sama_3322	0.19	-0.5
3,950,915	+		Sama_3322	0.19	-1.3
3,950,916	-		Sama_3322	0.19	-0.8
3,950,916	-		Sama_3322	0.19	+0.8
3,950,916	-		Sama_3322	0.19	-1.3
3,950,916	-		Sama_3322	0.19	+0.9
3,950,958	+		Sama_3322	0.23	-1.5
3,951,032	+		Sama_3322	0.31	-0.7
3,951,092	+		Sama_3322	0.37	+0.8
3,951,092	+		Sama_3322	0.37	+1.3
3,951,092	+		Sama_3322	0.37	-1.2
3,951,092	+		Sama_3322	0.37	-0.1
3,951,092	+		Sama_3322	0.37	-1.3
3,951,092	+		Sama_3322	0.37	-1.0
3,951,092	+		Sama_3322	0.37	+0.4
3,951,092	+		Sama_3322	0.37	-2.0
3,951,093	-		Sama_3322	0.37	-1.3
3,951,093	-		Sama_3322	0.37	-0.5
3,951,093	-		Sama_3322	0.37	-0.1
3,951,093	-		Sama_3322	0.37	-2.0
3,951,097	+		Sama_3322	0.38	+0.9
3,951,097	+		Sama_3322	0.38	-1.2
3,951,097	+		Sama_3322	0.38	-1.0
3,951,098	-		Sama_3322	0.38	-0.1
3,951,236	+		Sama_3322	0.52	+2.1
3,951,236	+		Sama_3322	0.52	-3.4
3,951,236	+		Sama_3322	0.52	-3.0
3,951,237	-		Sama_3322	0.52	-0.1
3,951,237	-		Sama_3322	0.52	-3.0
3,951,237	-		Sama_3322	0.52	-0.9
3,951,325	+		Sama_3322	0.61	+0.2
3,951,358	+		Sama_3322	0.64	+1.3
3,951,358	+		Sama_3322	0.64	+0.4
3,951,359	-		Sama_3322	0.64	+3.2
3,951,406	+		Sama_3322	0.69	-0.5
3,951,406	+		Sama_3322	0.69	+1.3
3,951,407	-		Sama_3322	0.69	+2.4
3,951,407	-		Sama_3322	0.69	-0.9
3,951,407	-		Sama_3322	0.69	-0.8
3,951,407	-		Sama_3322	0.69	-1.5
3,951,440	+		Sama_3322	0.73	+1.7
3,951,440	+		Sama_3322	0.73	-1.3
3,951,441	-		Sama_3322	0.73	+0.5
3,951,441	-		Sama_3322	0.73	-0.6
3,951,441	-		Sama_3322	0.73	+0.4
3,951,465	-		Sama_3322	0.75	-1.7
3,951,509	+		Sama_3322	0.80	-1.7
3,951,509	+		Sama_3322	0.80	-1.8
3,951,509	+		Sama_3322	0.80	+0.3
3,951,509	+		Sama_3322	0.80	-0.2
3,951,509	+		Sama_3322	0.80	+0.2
3,951,510	-		Sama_3322	0.80	+0.9
3,951,510	-		Sama_3322	0.80	+0.7
3,951,517	+		Sama_3322	0.81	-2.1
3,951,540	+		Sama_3322	0.83	-0.9
3,951,555	+		Sama_3322	0.84	+0.2
3,951,555	+		Sama_3322	0.84	+0.9
3,951,555	+		Sama_3322	0.84	-2.7
3,951,556	-		Sama_3322	0.85	-2.2
3,951,556	-		Sama_3322	0.85	+1.8
3,951,556	-		Sama_3322	0.85	+0.4
3,951,556	-		Sama_3322	0.85	-0.5
3,951,556	-		Sama_3322	0.85	-1.0
3,951,556	-		Sama_3322	0.85	-0.2
3,951,585	+		Sama_3322	0.88	+2.1