Strain Fitness in Shewanella amazonensis SB2B around Sama_3316

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,945,845	+				+0.5
3,945,845	+				-0.2
3,945,846	-				+1.3
3,945,846	-				+0.7
3,945,977	-				-0.8
3,945,977	-				+0.7
3,946,069	+		Sama_3315	0.14	-1.2
3,946,167	+		Sama_3315	0.28	+0.1
3,946,209	+		Sama_3315	0.34	-1.2
3,946,361	+		Sama_3315	0.55	+0.3
3,946,361	+		Sama_3315	0.55	-0.3
3,946,361	+		Sama_3315	0.55	-1.3
3,946,361	+		Sama_3315	0.55	-0.2
3,946,361	+		Sama_3315	0.55	-1.5
3,946,362	-		Sama_3315	0.55	-0.7
3,946,362	-		Sama_3315	0.55	+0.5
3,946,362	-		Sama_3315	0.55	+2.3
3,946,362	-		Sama_3315	0.55	-1.4
3,946,362	-		Sama_3315	0.55	-0.2
3,946,362	-		Sama_3315	0.55	-1.1
3,946,362	-		Sama_3315	0.55	+2.1
3,946,362	-		Sama_3315	0.55	+0.1
3,946,371	+		Sama_3315	0.56	+0.3
3,946,381	-		Sama_3315	0.58	+0.9
3,946,398	-		Sama_3315	0.60	-0.5
3,946,449	-		Sama_3315	0.67	+1.9
3,946,449	-		Sama_3315	0.67	+0.8
3,946,457	+		Sama_3315	0.68	+0.6
3,946,458	-		Sama_3315	0.68	-1.7
3,946,548	+		Sama_3315	0.81	-0.4
3,946,548	+		Sama_3315	0.81	-2.4
3,946,548	+		Sama_3315	0.81	-0.0
3,946,548	+		Sama_3315	0.81	+0.2
3,946,548	+		Sama_3315	0.81	+0.0
3,946,548	+		Sama_3315	0.81	-0.1
3,946,548	+		Sama_3315	0.81	+0.4
3,946,548	+		Sama_3315	0.81	+0.1
3,946,548	+		Sama_3315	0.81	+1.6
3,946,549	-		Sama_3315	0.81	-0.8
3,946,549	-		Sama_3315	0.81	+0.3
3,946,549	-		Sama_3315	0.81	-2.4
3,946,549	-		Sama_3315	0.81	+0.1
3,946,549	-		Sama_3315	0.81	-1.6
3,946,549	-		Sama_3315	0.81	-0.9
3,946,568	+		Sama_3315	0.84	+0.3
3,946,568	+		Sama_3315	0.84	-1.8
3,946,568	+		Sama_3315	0.84	+0.3
3,946,568	+		Sama_3315	0.84	+0.2
3,946,568	+		Sama_3315	0.84	-0.4
3,946,568	+		Sama_3315	0.84	-0.3
3,946,568	+		Sama_3315	0.84	+0.0
3,946,568	+		Sama_3315	0.84	+0.1
3,946,568	+		Sama_3315	0.84	+0.8
3,946,568	+		Sama_3315	0.84	-1.6
3,946,568	+		Sama_3315	0.84	-0.2
3,946,568	+		Sama_3315	0.84	+0.6
3,946,569	-		Sama_3315	0.84	+0.1
3,946,569	-		Sama_3315	0.84	+1.5
3,946,569	-		Sama_3315	0.84	-0.3
3,946,666	+				-0.2
3,946,666	+				-0.4
3,946,667	-				-2.1
3,946,667	-				+0.1
3,946,667	-				-1.3
3,946,715	+				-1.0
3,946,715	+				-1.1
3,946,715	+				-1.8
3,946,715	+				+2.6
3,946,715	+				-0.4
3,946,716	-				-1.3
3,946,716	-				-0.4
3,946,716	-				-0.9
3,946,762	+				+0.6
3,946,768	+				-0.9
3,946,768	+				+0.4
3,946,768	+				-1.3
3,946,768	+				-1.1
3,946,776	+				+0.6
3,946,776	+				-2.0
3,946,777	-				-1.9
3,946,777	-				-3.6
3,946,777	-				-2.4
3,946,777	-				+0.7
3,946,777	-				-0.1
3,946,783	-				+0.9
3,946,783	-				+0.5
3,946,810	+				-0.7
3,946,810	+				-1.9
3,946,811	-				-1.4
3,946,834	+				-0.2
3,946,842	+				+0.2
3,946,842	+				+0.4
3,946,843	-				-2.6
3,946,892	-		Sama_3316	0.26	-1.6
3,946,985	+		Sama_3316	0.61	+1.6
3,946,985	+		Sama_3316	0.61	+0.9
3,946,985	+		Sama_3316	0.61	+1.6
3,947,078	+				+0.1
3,947,078	+				+1.0
3,947,078	+				+0.3
3,947,078	+				-2.0
3,947,078	+				-1.7
3,947,078	+				+0.9
3,947,079	-				-1.6
3,947,079	-				+0.1
3,947,079	-				-2.0
3,947,079	-				-0.4
3,947,079	-				+0.7
3,947,079	-				-1.1
3,947,079	-				+0.7
3,947,079	-				-2.5
3,947,083	+				+1.8
3,947,084	-				-0.9
3,947,129	-		Sama_3317	0.12	-2.2
3,947,188	-		Sama_3317	0.28	+0.1
3,947,221	+		Sama_3317	0.38	+0.3
3,947,222	-		Sama_3317	0.38	-0.9
3,947,222	-		Sama_3317	0.38	-1.2
3,947,222	-		Sama_3317	0.38	+0.1
3,947,232	-		Sama_3317	0.41	+1.0
3,947,242	+		Sama_3317	0.44	+1.3
3,947,242	+		Sama_3317	0.44	+0.7
3,947,242	+		Sama_3317	0.44	+1.9
3,947,242	+		Sama_3317	0.44	+0.2
3,947,242	+		Sama_3317	0.44	+0.2
3,947,243	-		Sama_3317	0.44	+0.8
3,947,243	-		Sama_3317	0.44	-0.1
3,947,243	-		Sama_3317	0.44	+0.5
3,947,243	-		Sama_3317	0.44	-0.8
3,947,243	-		Sama_3317	0.44	+2.1
3,947,243	-		Sama_3317	0.44	-0.4
3,947,374	+		Sama_3317	0.81	-1.7
3,947,374	+		Sama_3317	0.81	-1.9
3,947,374	+		Sama_3317	0.81	+0.1
3,947,374	+		Sama_3317	0.81	-3.0
3,947,374	+		Sama_3317	0.81	-1.1
3,947,374	+		Sama_3317	0.81	-1.8
3,947,374	+		Sama_3317	0.81	+1.8
3,947,374	+		Sama_3317	0.81	+2.0
3,947,374	+		Sama_3317	0.81	-0.1
3,947,374	+		Sama_3317	0.81	+3.9
3,947,375	-		Sama_3317	0.81	-0.1
3,947,375	-		Sama_3317	0.81	+0.2
3,947,375	-		Sama_3317	0.81	+0.3
3,947,375	-		Sama_3317	0.81	+1.2
3,947,375	-		Sama_3317	0.81	+0.9
3,947,375	-		Sama_3317	0.81	-2.4
3,947,375	-		Sama_3317	0.81	-3.4
3,947,375	-		Sama_3317	0.81	-2.0
3,947,375	-		Sama_3317	0.81	-1.6
3,947,375	-		Sama_3317	0.81	-0.7
3,947,375	-		Sama_3317	0.81	+2.9
3,947,375	-		Sama_3317	0.81	+1.9
3,947,375	-		Sama_3317	0.81	+0.1
3,947,375	-		Sama_3317	0.81	-0.5
3,947,375	-		Sama_3317	0.81	-0.4
3,947,391	+		Sama_3317	0.86	+1.5
3,947,391	+		Sama_3317	0.86	-0.0
3,947,391	+		Sama_3317	0.86	+0.2
3,947,391	+		Sama_3317	0.86	-1.2
3,947,391	+		Sama_3317	0.86	-1.1
3,947,392	-		Sama_3317	0.86	-1.5
3,947,392	-		Sama_3317	0.86	-1.3
3,947,392	-		Sama_3317	0.86	+1.0
3,947,392	-		Sama_3317	0.86	+0.7
3,947,392	-		Sama_3317	0.86	-1.3
3,947,456	+				-0.8
3,947,456	+				-0.4
3,947,456	+				+0.9
3,947,456	+				-2.3
3,947,472	-				-3.0
3,947,518	-				-1.7
3,947,537	+				+1.1
3,947,537	+				-1.9
3,947,538	-				+1.3
3,947,616	-				+0.2
3,947,653	-		Sama_3318	0.10	-1.6
3,947,691	+		Sama_3318	0.13	-0.1
3,947,692	-		Sama_3318	0.13	-1.0
3,947,692	-		Sama_3318	0.13	-1.2
3,947,692	-		Sama_3318	0.13	-1.1
3,947,723	+		Sama_3318	0.15	-1.8
3,947,723	+		Sama_3318	0.15	+1.6
3,947,724	-		Sama_3318	0.15	+1.3
3,947,724	-		Sama_3318	0.15	+1.2
3,947,793	+		Sama_3318	0.20	+1.8
3,947,888	+		Sama_3318	0.26	+0.6
3,947,889	-		Sama_3318	0.26	-2.9
3,947,987	+		Sama_3318	0.32	-0.8
3,947,987	+		Sama_3318	0.32	+1.1
3,947,987	+		Sama_3318	0.32	-2.3
3,947,988	-		Sama_3318	0.32	-2.3
3,947,988	-		Sama_3318	0.32	-0.6
3,947,997	+		Sama_3318	0.33	+0.6
3,947,997	+		Sama_3318	0.33	+0.6
3,947,997	+		Sama_3318	0.33	+0.0
3,947,998	-		Sama_3318	0.33	-1.7
3,947,998	-		Sama_3318	0.33	+2.3
3,947,998	-		Sama_3318	0.33	-1.5
3,948,008	+		Sama_3318	0.34	+1.3
3,948,008	+		Sama_3318	0.34	+0.9
3,948,008	+		Sama_3318	0.34	+0.2
3,948,009	-		Sama_3318	0.34	-0.9
3,948,009	-		Sama_3318	0.34	-0.1
3,948,059	+		Sama_3318	0.37	-4.1
3,948,059	+		Sama_3318	0.37	-1.2
3,948,059	+		Sama_3318	0.37	+2.5
3,948,059	+		Sama_3318	0.37	+0.9
3,948,059	+		Sama_3318	0.37	+0.0
3,948,059	+		Sama_3318	0.37	-0.0
3,948,059	+		Sama_3318	0.37	-0.3
3,948,059	+		Sama_3318	0.37	-1.8
3,948,059	+		Sama_3318	0.37	+1.4
3,948,059	+		Sama_3318	0.37	-0.7
3,948,059	+		Sama_3318	0.37	-1.1
3,948,059	+		Sama_3318	0.37	+0.8
3,948,059	+		Sama_3318	0.37	-0.6
3,948,059	+		Sama_3318	0.37	-0.1
3,948,059	+		Sama_3318	0.37	+0.3
3,948,059	+		Sama_3318	0.37	-1.1
3,948,059	+		Sama_3318	0.37	+0.9
3,948,059	+		Sama_3318	0.37	-0.7
3,948,059	+		Sama_3318	0.37	+2.0
3,948,059	+		Sama_3318	0.37	-1.2
3,948,059	+		Sama_3318	0.37	-1.6
3,948,059	+		Sama_3318	0.37	+2.1
3,948,059	+		Sama_3318	0.37	-0.1
3,948,060	-		Sama_3318	0.37	+0.7
3,948,060	-		Sama_3318	0.37	-0.1
3,948,060	-		Sama_3318	0.37	-1.5
3,948,060	-		Sama_3318	0.37	-1.6
3,948,060	-		Sama_3318	0.37	-1.4
3,948,060	-		Sama_3318	0.37	+0.5
3,948,060	-		Sama_3318	0.37	+1.6
3,948,060	-		Sama_3318	0.37	+1.9
3,948,060	-		Sama_3318	0.37	-1.8
3,948,060	-		Sama_3318	0.37	-1.8
3,948,060	-		Sama_3318	0.37	+1.5
3,948,060	-		Sama_3318	0.37	-2.3
3,948,060	-		Sama_3318	0.37	+1.1
3,948,060	-		Sama_3318	0.37	-2.7
3,948,060	-		Sama_3318	0.37	-0.1
3,948,060	-		Sama_3318	0.37	-0.2
3,948,060	-		Sama_3318	0.37	+0.9
3,948,060	-		Sama_3318	0.37	-1.5
3,948,060	-		Sama_3318	0.37	+0.9
3,948,060	-		Sama_3318	0.37	-0.6
3,948,060	-		Sama_3318	0.37	-2.1
3,948,060	-		Sama_3318	0.37	-0.8
3,948,060	-		Sama_3318	0.37	-0.9
3,948,060	-		Sama_3318	0.37	+0.7
3,948,060	-		Sama_3318	0.37	+1.9
3,948,060	-		Sama_3318	0.37	-2.8
3,948,060	-		Sama_3318	0.37	-0.5
3,948,063	+		Sama_3318	0.37	-0.3
3,948,063	+		Sama_3318	0.37	-0.2
3,948,063	+		Sama_3318	0.37	+0.7
3,948,063	+		Sama_3318	0.37	+1.7
3,948,063	+		Sama_3318	0.37	-1.3
3,948,063	+		Sama_3318	0.37	+1.6
3,948,063	+		Sama_3318	0.37	+0.5
3,948,063	+		Sama_3318	0.37	-1.1
3,948,063	+		Sama_3318	0.37	-1.2
3,948,063	+		Sama_3318	0.37	+1.6
3,948,063	+		Sama_3318	0.37	+0.1
3,948,064	-		Sama_3318	0.37	-1.0
3,948,064	-		Sama_3318	0.37	-1.4
3,948,064	-		Sama_3318	0.37	+1.4
3,948,064	-		Sama_3318	0.37	-2.4
3,948,064	-		Sama_3318	0.37	-0.7
3,948,064	-		Sama_3318	0.37	-0.7
3,948,064	-		Sama_3318	0.37	-2.3
3,948,064	-		Sama_3318	0.37	-0.8
3,948,064	-		Sama_3318	0.37	-2.1
3,948,064	-		Sama_3318	0.37	+0.3
3,948,064	-		Sama_3318	0.37	-1.9
3,948,064	-		Sama_3318	0.37	+1.8
3,948,064	-		Sama_3318	0.37	-0.2
3,948,064	-		Sama_3318	0.37	+0.0
3,948,064	-		Sama_3318	0.37	+0.9