Strain Fitness in Shewanella amazonensis SB2B around Sama_3312

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,941,137	+		Sama_3311	0.42	+1.1
3,941,137	+		Sama_3311	0.42	-1.5
3,941,138	-		Sama_3311	0.42	-0.0
3,941,138	-		Sama_3311	0.42	+1.6
3,941,158	+		Sama_3311	0.44	-0.7
3,941,158	+		Sama_3311	0.44	-0.8
3,941,158	+		Sama_3311	0.44	+0.0
3,941,167	+		Sama_3311	0.44	-1.4
3,941,167	+		Sama_3311	0.44	-0.7
3,941,167	+		Sama_3311	0.44	-0.1
3,941,167	+		Sama_3311	0.44	-0.3
3,941,167	+		Sama_3311	0.44	-0.6
3,941,168	-		Sama_3311	0.44	-0.5
3,941,168	-		Sama_3311	0.44	-3.5
3,941,168	-		Sama_3311	0.44	+0.7
3,941,168	-		Sama_3311	0.44	-2.0
3,941,211	+		Sama_3311	0.47	-1.4
3,941,212	-		Sama_3311	0.47	-1.7
3,941,212	-		Sama_3311	0.47	-1.3
3,941,218	+		Sama_3311	0.48	+2.2
3,941,218	+		Sama_3311	0.48	-1.2
3,941,240	-		Sama_3311	0.49	-1.5
3,941,240	-		Sama_3311	0.49	+0.2
3,941,255	+		Sama_3311	0.50	-2.6
3,941,255	+		Sama_3311	0.50	-0.6
3,941,255	+		Sama_3311	0.50	-1.9
3,941,256	-		Sama_3311	0.50	+1.0
3,941,256	-		Sama_3311	0.50	-0.0
3,941,256	-		Sama_3311	0.50	-1.1
3,941,299	+		Sama_3311	0.53	+1.1
3,941,299	+		Sama_3311	0.53	-0.2
3,941,299	+		Sama_3311	0.53	+0.4
3,941,299	+		Sama_3311	0.53	+1.4
3,941,299	+		Sama_3311	0.53	+0.5
3,941,300	-		Sama_3311	0.53	-0.9
3,941,391	+		Sama_3311	0.60	+0.2
3,941,392	-		Sama_3311	0.60	+2.4
3,941,392	-		Sama_3311	0.60	-1.4
3,941,443	+		Sama_3311	0.63	-1.4
3,941,443	+		Sama_3311	0.63	-1.7
3,941,443	+		Sama_3311	0.63	-1.2
3,941,444	-		Sama_3311	0.63	-0.1
3,941,480	+		Sama_3311	0.66	-1.4
3,941,481	-		Sama_3311	0.66	+0.4
3,941,481	-		Sama_3311	0.66	+1.3
3,941,529	+		Sama_3311	0.69	-1.3
3,941,595	+		Sama_3311	0.74	-0.4
3,941,595	+		Sama_3311	0.74	-2.9
3,941,595	+		Sama_3311	0.74	+0.4
3,941,596	-		Sama_3311	0.74	-0.4
3,941,596	-		Sama_3311	0.74	+0.3
3,941,596	-		Sama_3311	0.74	+1.5
3,941,596	-		Sama_3311	0.74	-3.2
3,941,596	-		Sama_3311	0.74	-1.0
3,941,596	-		Sama_3311	0.74	-1.3
3,941,596	-		Sama_3311	0.74	-1.2
3,941,985	+				+0.3
3,942,010	+				+0.1
3,942,011	-				-0.5
3,942,055	+				+0.1
3,942,055	+				-0.1
3,942,055	+				+1.9
3,942,056	-				-1.1
3,942,056	-				+1.0
3,942,076	+				+0.7
3,942,076	+				+0.3
3,942,076	+				+0.6
3,942,077	-				-0.1
3,942,077	-				+2.7
3,942,124	+				-0.6
3,942,125	-				-0.3
3,942,125	-				-0.5
3,942,136	+				-1.5
3,942,136	+				+1.1
3,942,136	+				-0.4
3,942,136	+				+0.8
3,942,136	+				+0.6
3,942,136	+				+0.5
3,942,136	+				+2.1
3,942,137	-				+0.3
3,942,137	-				+1.9
3,942,137	-				-1.5
3,942,137	-				-1.3
3,942,137	-				-1.8
3,942,137	-				+1.9
3,942,137	-				-1.1
3,942,137	-				-1.7
3,942,206	+		Sama_3312	0.11	-2.9
3,942,237	-		Sama_3312	0.16	-0.4
3,942,255	+		Sama_3312	0.19	-1.3
3,942,255	+		Sama_3312	0.19	-0.7
3,942,256	-		Sama_3312	0.19	+1.3
3,942,266	-		Sama_3312	0.20	+2.0
3,942,300	+		Sama_3312	0.26	-2.7
3,942,375	+		Sama_3312	0.37	+1.2
3,942,375	+		Sama_3312	0.37	+1.2
3,942,385	+		Sama_3312	0.39	+1.0
3,942,385	+		Sama_3312	0.39	+2.0
3,942,385	+		Sama_3312	0.39	+1.7
3,942,385	+		Sama_3312	0.39	+1.6
3,942,385	+		Sama_3312	0.39	+0.9
3,942,385	+		Sama_3312	0.39	-2.0
3,942,385	+		Sama_3312	0.39	-0.2
3,942,385	+		Sama_3312	0.39	-2.6
3,942,385	+		Sama_3312	0.39	+1.4
3,942,385	+		Sama_3312	0.39	-0.2
3,942,385	+		Sama_3312	0.39	+0.2
3,942,385	+		Sama_3312	0.39	+1.8
3,942,385	+		Sama_3312	0.39	-2.3
3,942,385	+		Sama_3312	0.39	+1.6
3,942,385	+		Sama_3312	0.39	+0.1
3,942,385	+		Sama_3312	0.39	-1.1
3,942,385	+		Sama_3312	0.39	+1.9
3,942,386	-		Sama_3312	0.39	-1.6
3,942,386	-		Sama_3312	0.39	-0.2
3,942,386	-		Sama_3312	0.39	+1.5
3,942,386	-		Sama_3312	0.39	-3.1
3,942,386	-		Sama_3312	0.39	-0.2
3,942,386	-		Sama_3312	0.39	+0.3
3,942,386	-		Sama_3312	0.39	+1.0
3,942,386	-		Sama_3312	0.39	-1.5
3,942,386	-		Sama_3312	0.39	+0.6
3,942,386	-		Sama_3312	0.39	+2.4
3,942,386	-		Sama_3312	0.39	-0.4
3,942,386	-		Sama_3312	0.39	+3.1
3,942,386	-		Sama_3312	0.39	+1.1
3,942,386	-		Sama_3312	0.39	-1.9
3,942,386	-		Sama_3312	0.39	+0.4
3,942,386	-		Sama_3312	0.39	-0.6
3,942,477	+		Sama_3312	0.53	-0.7
3,942,477	+		Sama_3312	0.53	-0.4
3,942,477	+		Sama_3312	0.53	+1.2
3,942,478	-		Sama_3312	0.54	+0.5
3,942,478	-		Sama_3312	0.54	-1.3
3,942,503	+		Sama_3312	0.58	+0.2
3,942,504	-		Sama_3312	0.58	+1.6
3,942,504	-		Sama_3312	0.58	-0.7
3,942,571	+		Sama_3312	0.68	-0.9
3,942,571	+		Sama_3312	0.68	+0.6
3,942,571	+		Sama_3312	0.68	-1.5
3,942,571	+		Sama_3312	0.68	-1.1
3,942,571	+		Sama_3312	0.68	-1.3
3,942,571	+		Sama_3312	0.68	+0.6
3,942,571	+		Sama_3312	0.68	-2.7
3,942,571	+		Sama_3312	0.68	-3.5
3,942,571	+		Sama_3312	0.68	-1.0
3,942,571	+		Sama_3312	0.68	+1.7
3,942,571	+		Sama_3312	0.68	-1.5
3,942,572	-		Sama_3312	0.68	-0.9
3,942,572	-		Sama_3312	0.68	+0.7
3,942,572	-		Sama_3312	0.68	+0.5
3,942,572	-		Sama_3312	0.68	+0.3
3,942,572	-		Sama_3312	0.68	-1.3
3,942,572	-		Sama_3312	0.68	-0.9
3,942,572	-		Sama_3312	0.68	-0.8
3,942,572	-		Sama_3312	0.68	+0.2
3,942,572	-		Sama_3312	0.68	+0.4
3,942,572	-		Sama_3312	0.68	-2.5
3,942,572	-		Sama_3312	0.68	+0.5
3,942,572	-		Sama_3312	0.68	-0.7
3,942,572	-		Sama_3312	0.68	+0.3
3,942,572	-		Sama_3312	0.68	-1.7
3,942,575	+		Sama_3312	0.69	-2.2
3,942,575	+		Sama_3312	0.69	-1.9
3,942,575	+		Sama_3312	0.69	+1.6
3,942,575	+		Sama_3312	0.69	-1.1
3,942,575	+		Sama_3312	0.69	+0.3
3,942,576	-		Sama_3312	0.69	+0.2
3,942,576	-		Sama_3312	0.69	-0.6
3,942,576	-		Sama_3312	0.69	-0.7
3,942,576	-		Sama_3312	0.69	+0.9
3,942,576	-		Sama_3312	0.69	-0.1
3,942,576	-		Sama_3312	0.69	-1.8
3,942,669	+		Sama_3312	0.84	-1.8
3,942,670	-		Sama_3312	0.84	-1.9
3,942,697	+		Sama_3312	0.88	+1.7
3,942,697	+		Sama_3312	0.88	-0.7
3,942,697	+		Sama_3312	0.88	-1.0
3,942,697	+		Sama_3312	0.88	+1.5
3,942,698	-		Sama_3312	0.88	-0.4
3,942,698	-		Sama_3312	0.88	-0.8
3,942,750	+				-0.7
3,942,751	-				-2.1
3,942,751	-				+1.0
3,942,751	-				+0.0
3,942,770	+				+0.9
3,942,800	+				-1.5
3,942,801	-				-0.3
3,942,806	+				-0.2
3,942,806	+				+0.5
3,942,806	+				-0.1
3,942,807	-				+0.3
3,942,807	-				-0.6
3,942,813	-				-3.3
3,942,819	+				+0.1
3,942,819	+				-3.4
3,942,819	+				+2.1
3,942,819	+				-0.6
3,942,819	+				-1.0
3,942,820	-				-1.5
3,942,820	-				+0.1
3,942,820	-				-1.1
3,942,820	-				-2.9
3,942,820	-				-1.0
3,942,823	+				-1.3
3,942,823	+				-0.5
3,942,823	+				+0.3
3,942,823	+				-1.3
3,942,823	+				-2.0
3,942,824	-				+0.6
3,942,824	-				+1.9
3,942,824	-				-0.5
3,942,824	-				+3.1
3,942,824	-				-0.1
3,942,824	-				-0.1
3,942,829	+				-1.0
3,942,829	+				+0.3
3,942,829	+				-1.3
3,942,829	+				-0.7
3,942,838	+				-1.1
3,942,839	-				-0.1
3,942,845	-				-0.2
3,942,853	+				+3.1
3,942,853	+				-3.1
3,942,853	+				+1.2
3,942,854	-				-0.6
3,942,888	+				-0.1
3,942,888	+				+0.0
3,942,888	+				-1.2
3,942,888	+				+0.3
3,942,888	+				-0.1
3,942,888	+				-1.9
3,942,888	+				-2.7
3,942,888	+				+0.3
3,942,889	-				+0.2
3,942,889	-				+0.0
3,942,889	-				-2.5
3,942,889	-				-0.4
3,942,889	-				-2.7
3,942,889	-				+1.1
3,942,889	-				+0.9
3,942,889	-				+0.6
3,942,889	-				-1.8
3,942,889	-				-0.3
3,942,900	+				+0.3
3,942,900	+				+0.9
3,942,901	-				-0.1
3,942,901	-				-1.3
3,942,939	+				-1.8
3,942,939	+				-2.0
3,942,939	+				+1.1
3,942,940	-				-0.5
3,943,055	+		Sama_3313	0.15	-1.1
3,943,056	-		Sama_3313	0.15	+0.0
3,943,089	+		Sama_3313	0.18	+1.4
3,943,089	+		Sama_3313	0.18	-1.0
3,943,089	+		Sama_3313	0.18	-0.8
3,943,090	-		Sama_3313	0.18	+1.4
3,943,095	+		Sama_3313	0.18	-0.7
3,943,095	+		Sama_3313	0.18	-0.3
3,943,095	+		Sama_3313	0.18	-1.4
3,943,095	+		Sama_3313	0.18	-2.0
3,943,095	+		Sama_3313	0.18	+2.7
3,943,095	+		Sama_3313	0.18	-0.6
3,943,095	+		Sama_3313	0.18	-1.6
3,943,095	+		Sama_3313	0.18	-1.9
3,943,095	+		Sama_3313	0.18	-2.0
3,943,095	+		Sama_3313	0.18	-0.4
3,943,095	+		Sama_3313	0.18	-0.1
3,943,096	-		Sama_3313	0.18	-0.6
3,943,096	-		Sama_3313	0.18	+3.0
3,943,096	-		Sama_3313	0.18	+4.6
3,943,096	-		Sama_3313	0.18	-2.3
3,943,096	-		Sama_3313	0.18	-0.1
3,943,096	-		Sama_3313	0.18	-2.5
3,943,096	-		Sama_3313	0.18	+1.3
3,943,096	-		Sama_3313	0.18	-0.2
3,943,096	-		Sama_3313	0.18	-1.1
3,943,096	-		Sama_3313	0.18	+0.9
3,943,100	-		Sama_3313	0.18	-1.7
3,943,160	+		Sama_3313	0.22	-2.2
3,943,186	+		Sama_3313	0.24	+0.1
3,943,187	-		Sama_3313	0.24	+0.5
3,943,187	-		Sama_3313	0.24	+0.3
3,943,230	-		Sama_3313	0.27	-0.3
3,943,230	-		Sama_3313	0.27	-1.4
3,943,239	+		Sama_3313	0.27	+1.1
3,943,239	+		Sama_3313	0.27	-0.7
3,943,239	+		Sama_3313	0.27	-0.4
3,943,239	+		Sama_3313	0.27	-0.2
3,943,239	+		Sama_3313	0.27	-1.7
3,943,239	+		Sama_3313	0.27	+0.1
3,943,239	+		Sama_3313	0.27	+0.2
3,943,240	-		Sama_3313	0.27	-1.7
3,943,240	-		Sama_3313	0.27	-1.5
3,943,339	+		Sama_3313	0.34	-1.3
3,943,412	+		Sama_3313	0.38	-0.2
3,943,412	+		Sama_3313	0.38	-0.3
3,943,413	-		Sama_3313	0.39	+0.1
3,943,413	-		Sama_3313	0.39	-1.8
3,943,422	+		Sama_3313	0.39	+0.7
3,943,422	+		Sama_3313	0.39	+0.1
3,943,422	+		Sama_3313	0.39	-1.9
3,943,422	+		Sama_3313	0.39	-0.4
3,943,423	-		Sama_3313	0.39	-0.2
3,943,423	-		Sama_3313	0.39	+1.1
3,943,423	-		Sama_3313	0.39	-0.2
3,943,423	-		Sama_3313	0.39	-0.2
3,943,490	+		Sama_3313	0.43	-1.5
3,943,491	-		Sama_3313	0.44	-0.1
3,943,491	-		Sama_3313	0.44	+0.5
3,943,574	+		Sama_3313	0.49	-0.7
3,943,574	+		Sama_3313	0.49	-2.5
3,943,575	-		Sama_3313	0.49	-2.0
3,943,575	-		Sama_3313	0.49	-2.7
3,943,587	+		Sama_3313	0.50	-1.3
3,943,587	+		Sama_3313	0.50	+0.4
3,943,587	+		Sama_3313	0.50	+0.8
3,943,587	+		Sama_3313	0.50	+0.6
3,943,587	+		Sama_3313	0.50	+0.3
3,943,587	+		Sama_3313	0.50	-0.5
3,943,587	+		Sama_3313	0.50	-0.1
3,943,588	-		Sama_3313	0.50	+0.1
3,943,599	+		Sama_3313	0.51	+1.1
3,943,600	-		Sama_3313	0.51	-0.2
3,943,600	-		Sama_3313	0.51	-0.5
3,943,640	-		Sama_3313	0.53	+0.5
3,943,640	-		Sama_3313	0.53	-1.0
3,943,646	+		Sama_3313	0.54	+2.0
3,943,646	+		Sama_3313	0.54	+1.6
3,943,646	+		Sama_3313	0.54	+0.1
3,943,646	+		Sama_3313	0.54	-0.5
3,943,646	+		Sama_3313	0.54	+0.4
3,943,647	-		Sama_3313	0.54	-0.1
3,943,647	-		Sama_3313	0.54	-2.2
3,943,724	+		Sama_3313	0.59	+0.8
3,943,724	+		Sama_3313	0.59	+0.5
3,943,725	-		Sama_3313	0.59	+2.4
3,943,725	-		Sama_3313	0.59	+0.1