Strain Fitness in Shewanella amazonensis SB2B around Sama_3229

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,821,757	+		Sama_3228	0.81	-0.2
3,821,758	+		Sama_3228	0.81	+0.4
3,821,758	+		Sama_3228	0.81	-1.0
3,821,758	+		Sama_3228	0.81	+0.2
3,821,759	-		Sama_3228	0.82	-0.2
3,821,759	-		Sama_3228	0.82	-2.9
3,821,777	+		Sama_3228	0.83	-1.8
3,821,777	+		Sama_3228	0.83	-0.5
3,821,777	+		Sama_3228	0.83	+1.6
3,821,777	+		Sama_3228	0.83	-0.8
3,821,778	-		Sama_3228	0.83	-1.1
3,821,778	-		Sama_3228	0.83	-0.5
3,821,783	+		Sama_3228	0.84	+0.3
3,821,792	+		Sama_3228	0.84	-0.8
3,821,792	+		Sama_3228	0.84	+0.4
3,821,792	+		Sama_3228	0.84	-0.5
3,821,792	+		Sama_3228	0.84	+1.3
3,821,793	-		Sama_3228	0.85	+1.5
3,821,793	-		Sama_3228	0.85	+0.2
3,821,793	-		Sama_3228	0.85	+1.8
3,821,861	+				-0.6
3,821,861	+				+1.1
3,821,861	+				+0.9
3,821,861	+				-0.2
3,821,861	+				-1.5
3,821,861	+				-1.3
3,821,861	+				-0.7
3,821,861	+				-0.5
3,821,862	-				-0.8
3,821,862	-				-0.1
3,821,862	-				+0.6
3,821,862	-				+0.2
3,821,862	-				-0.1
3,821,862	-				-1.1
3,821,863	+				+1.5
3,821,864	-				-1.2
3,821,864	-				+0.4
3,821,864	-				+2.8
3,821,864	-				-2.3
3,821,864	-				-2.1
3,821,864	-				+0.8
3,821,864	-				+0.2
3,821,865	+				-0.8
3,821,865	+				-2.2
3,821,865	+				-2.3
3,821,865	+				+0.1
3,821,865	+				-2.4
3,821,865	+				+1.4
3,821,865	+				-0.6
3,821,865	+				-1.0
3,821,865	+				-1.5
3,821,865	+				+0.6
3,821,866	-				-1.5
3,821,866	-				-1.1
3,821,866	-				-0.9
3,821,866	-				-1.3
3,821,866	-				+0.1
3,821,866	-				+0.4
3,821,866	-				-3.0
3,821,866	-				+2.8
3,821,905	+				-1.0
3,821,906	-				-1.3
3,821,960	+				+0.4
3,821,960	+				-0.5
3,821,960	+				+0.3
3,821,961	-				-0.7
3,821,961	-				-0.2
3,821,961	-				+0.3
3,821,961	-				+2.3
3,821,971	+				+2.7
3,821,971	+				+0.0
3,821,971	+				-0.1
3,821,972	-				+0.2
3,821,972	-				+1.0
3,822,064	+				-0.7
3,822,065	-				+1.1
3,822,065	-				-0.6
3,822,081	+				-2.2
3,822,081	+				+0.0
3,822,081	+				-0.8
3,822,082	-				-0.5
3,822,082	-				-2.3
3,822,082	-				+1.7
3,822,082	-				-1.5
3,822,082	-				-1.2
3,822,127	+				+1.4
3,822,128	-				-1.3
3,822,128	-				+0.5
3,822,128	-				-0.7
3,822,151	+				+1.0
3,822,151	+				+1.3
3,822,152	-				-0.6
3,822,152	-				-0.2
3,822,152	-				+1.5
3,822,182	+				-3.7
3,822,183	-				-0.3
3,822,193	+				-1.3
3,822,193	+				+0.9
3,822,194	-				-1.2
3,822,194	-				-0.5
3,822,194	-				-2.1
3,822,194	-				-0.6
3,822,221	-				+2.6
3,822,233	-				+1.2
3,822,234	+				+0.4
3,822,271	+				-1.5
3,822,272	-				+0.7
3,822,284	+				+0.5
3,822,326	+				-1.5
3,822,328	+				+3.2
3,822,328	+				+1.7
3,822,328	+				+0.4
3,822,328	+				+1.2
3,822,329	-				+1.3
3,822,329	-				-0.4
3,822,329	-				-0.6
3,822,392	+				-1.0
3,822,398	-				-0.2
3,822,417	+				-0.2
3,822,417	+				+2.7
3,822,418	-				+1.5
3,822,448	+				+0.8
3,822,612	+				-1.0
3,822,613	-				+0.1
3,822,614	+				+1.6
3,822,614	+				-0.0
3,822,614	+				+0.5
3,822,614	+				+0.5
3,822,614	+				+1.9
3,822,615	-				+1.7
3,822,615	-				-1.2
3,822,615	-				+1.2
3,822,646	+				+0.2
3,822,646	+				+1.2
3,822,646	+				-0.0
3,822,647	-				+0.8
3,822,647	-				-0.1
3,822,647	-				-1.3
3,822,686	-				+0.1
3,822,709	+				+1.4
3,822,709	+				-2.1
3,822,709	+				+1.0
3,822,710	-				+1.3
3,822,718	+				+1.7
3,822,719	-				-0.8
3,822,719	-				-2.7
3,822,719	-				-2.7
3,822,727	-				+1.8
3,822,744	+				-0.2
3,822,754	+				+0.5
3,822,929	-		Sama_3229	0.22	+0.1
3,822,929	-		Sama_3229	0.22	+0.7
3,822,954	+		Sama_3229	0.24	+1.8
3,822,954	+		Sama_3229	0.24	+0.3
3,822,955	-		Sama_3229	0.24	-2.0
3,822,958	+		Sama_3229	0.25	-0.3
3,822,959	-		Sama_3229	0.25	+1.1
3,822,973	+		Sama_3229	0.26	-0.7
3,822,973	+		Sama_3229	0.26	-2.5
3,822,974	-		Sama_3229	0.26	-1.1
3,822,974	-		Sama_3229	0.26	-0.5
3,822,987	+		Sama_3229	0.28	+0.1
3,822,988	-		Sama_3229	0.28	-0.8
3,823,009	-		Sama_3229	0.30	+0.4
3,823,034	-		Sama_3229	0.32	-1.0
3,823,034	-		Sama_3229	0.32	-1.0
3,823,067	-		Sama_3229	0.36	-2.8
3,823,085	+		Sama_3229	0.37	+1.2
3,823,138	+		Sama_3229	0.43	-1.2
3,823,200	+		Sama_3229	0.49	-1.1
3,823,200	+		Sama_3229	0.49	-0.8
3,823,200	+		Sama_3229	0.49	-2.3
3,823,200	+		Sama_3229	0.49	-0.4
3,823,201	-		Sama_3229	0.49	+0.2
3,823,201	-		Sama_3229	0.49	-1.8
3,823,204	+		Sama_3229	0.49	-1.2
3,823,205	-		Sama_3229	0.49	-0.3
3,823,212	+		Sama_3229	0.50	-0.7
3,823,212	+		Sama_3229	0.50	+2.8
3,823,212	+		Sama_3229	0.50	+0.5
3,823,212	+		Sama_3229	0.50	-1.5
3,823,212	+		Sama_3229	0.50	-1.8
3,823,212	+		Sama_3229	0.50	-0.7
3,823,212	+		Sama_3229	0.50	+0.7
3,823,212	+		Sama_3229	0.50	-0.5
3,823,212	+		Sama_3229	0.50	+0.2
3,823,213	-		Sama_3229	0.50	-0.2
3,823,213	-		Sama_3229	0.50	-1.3
3,823,238	-		Sama_3229	0.53	+0.0
3,823,244	+		Sama_3229	0.53	+0.2
3,823,245	-		Sama_3229	0.53	-0.2
3,823,245	-		Sama_3229	0.53	+0.2
3,823,309	+		Sama_3229	0.60	+0.4
3,823,340	-		Sama_3229	0.63	-1.1
3,823,371	+		Sama_3229	0.66	-1.6
3,823,371	+		Sama_3229	0.66	+0.2
3,823,424	+		Sama_3229	0.71	-0.5
3,823,426	+		Sama_3229	0.71	-2.7
3,823,427	-		Sama_3229	0.72	-2.1
3,823,441	+		Sama_3229	0.73	-0.4
3,823,444	+		Sama_3229	0.73	+1.7
3,823,445	-		Sama_3229	0.73	+1.2
3,823,445	-		Sama_3229	0.73	-0.4
3,823,447	+		Sama_3229	0.74	+0.8
3,823,448	-		Sama_3229	0.74	+0.2
3,823,461	+		Sama_3229	0.75	-1.6
3,823,484	+		Sama_3229	0.77	+1.5
3,823,484	+		Sama_3229	0.77	-1.3
3,823,484	+		Sama_3229	0.77	+1.0
3,823,484	+		Sama_3229	0.77	+0.4
3,823,484	+		Sama_3229	0.77	+1.5
3,823,485	-		Sama_3229	0.77	-0.5
3,823,485	-		Sama_3229	0.77	+0.9
3,823,485	-		Sama_3229	0.77	+3.5
3,823,486	+		Sama_3229	0.77	-2.1
3,823,486	+		Sama_3229	0.77	-0.4
3,823,487	-		Sama_3229	0.78	+0.5
3,823,585	+		Sama_3229	0.87	-2.6
3,823,586	-		Sama_3229	0.87	+0.5
3,823,586	-		Sama_3229	0.87	-0.9
3,823,586	-		Sama_3229	0.87	-2.0
3,823,586	-		Sama_3229	0.87	-1.7
3,823,586	-		Sama_3229	0.87	-0.6
3,823,591	+		Sama_3229	0.88	-0.9
3,823,621	+				-2.1
3,823,622	-				-1.9
3,823,662	+				+0.4
3,823,662	+				-1.5
3,823,663	-				+1.6
3,823,663	-				-1.2
3,823,666	-				+1.5
3,823,690	+				-1.1
3,823,696	+				+0.3
3,823,697	-				-1.0
3,823,697	-				-1.0
3,823,701	+				-3.2
3,823,701	+				+1.4
3,823,734	+				-1.6
3,823,735	-				-0.8
3,823,775	+				+1.0
3,823,775	+				+0.2
3,823,804	+				+0.4
3,823,804	+				+0.3
3,823,805	-				+1.4
3,823,805	-				+1.9
3,823,807	+				-0.2
3,823,807	+				+0.5
3,823,808	-				+0.4
3,823,808	-				+0.1
3,823,818	+				+1.8
3,823,818	+				-2.1
3,823,818	+				+2.7
3,823,819	-				+0.8
3,823,825	-				+0.8
3,823,825	-				+0.4
3,823,831	+				-1.0
3,823,832	-				-0.8
3,823,845	-				-1.2
3,823,888	-				-0.3
3,823,944	-				-2.7
3,823,961	+		Sama_3230	0.12	-0.5
3,823,973	+		Sama_3230	0.14	-2.5
3,823,973	+		Sama_3230	0.14	+1.2
3,823,973	+		Sama_3230	0.14	-2.3
3,823,973	+		Sama_3230	0.14	+1.1
3,823,974	-		Sama_3230	0.15	-1.2
3,823,974	-		Sama_3230	0.15	+0.2
3,823,974	-		Sama_3230	0.15	-1.3
3,823,981	-		Sama_3230	0.16	-2.0
3,824,013	-		Sama_3230	0.22	-0.1
3,824,013	-		Sama_3230	0.22	-1.2
3,824,013	-		Sama_3230	0.22	-0.8
3,824,013	-		Sama_3230	0.22	-0.7
3,824,013	-		Sama_3230	0.22	+1.6
3,824,013	-		Sama_3230	0.22	-1.1
3,824,013	-		Sama_3230	0.22	+0.2
3,824,029	+		Sama_3230	0.26	-0.7
3,824,029	+		Sama_3230	0.26	+1.3
3,824,029	+		Sama_3230	0.26	+2.1
3,824,030	-		Sama_3230	0.26	-1.3
3,824,030	-		Sama_3230	0.26	+1.1
3,824,030	-		Sama_3230	0.26	-1.4
3,824,030	-		Sama_3230	0.26	+0.5
3,824,030	-		Sama_3230	0.26	+1.2
3,824,030	-		Sama_3230	0.26	-0.9
3,824,030	-		Sama_3230	0.26	-0.4
3,824,064	+		Sama_3230	0.33	-2.1
3,824,064	+		Sama_3230	0.33	+1.4
3,824,065	-		Sama_3230	0.33	-0.1
3,824,065	-		Sama_3230	0.33	-0.1
3,824,091	+		Sama_3230	0.38	-0.2
3,824,092	-		Sama_3230	0.38	+1.8
3,824,092	-		Sama_3230	0.38	-1.5
3,824,092	-		Sama_3230	0.38	+0.2
3,824,092	-		Sama_3230	0.38	-1.3
3,824,092	-		Sama_3230	0.38	+1.9
3,824,092	-		Sama_3230	0.38	+1.0
3,824,129	+		Sama_3230	0.46	+2.1
3,824,129	+		Sama_3230	0.46	-0.2
3,824,130	-		Sama_3230	0.46	+0.2
3,824,130	-		Sama_3230	0.46	+2.8
3,824,130	-		Sama_3230	0.46	-0.6
3,824,130	-		Sama_3230	0.46	+3.0
3,824,130	-		Sama_3230	0.46	+0.9
3,824,145	+		Sama_3230	0.49	-0.8
3,824,145	+		Sama_3230	0.49	-0.3
3,824,146	-		Sama_3230	0.49	-1.0
3,824,160	+		Sama_3230	0.52	+1.8
3,824,160	+		Sama_3230	0.52	+2.9
3,824,160	+		Sama_3230	0.52	-1.6
3,824,160	+		Sama_3230	0.52	+0.2
3,824,160	+		Sama_3230	0.52	-0.2
3,824,160	+		Sama_3230	0.52	+0.1
3,824,161	-		Sama_3230	0.52	-1.6
3,824,161	-		Sama_3230	0.52	-2.0
3,824,161	-		Sama_3230	0.52	+0.8
3,824,161	-		Sama_3230	0.52	-0.3
3,824,161	-		Sama_3230	0.52	-0.3
3,824,161	-		Sama_3230	0.52	-0.1
3,824,174	+		Sama_3230	0.54	-0.6
3,824,174	+		Sama_3230	0.54	-1.0
3,824,174	+		Sama_3230	0.54	+1.2
3,824,174	+		Sama_3230	0.54	-1.4
3,824,174	+		Sama_3230	0.54	-1.2
3,824,175	-		Sama_3230	0.55	-0.6
3,824,175	-		Sama_3230	0.55	+1.2
3,824,175	-		Sama_3230	0.55	-1.8
3,824,175	-		Sama_3230	0.55	-0.0
3,824,175	-		Sama_3230	0.55	-2.5
3,824,175	-		Sama_3230	0.55	+0.6
3,824,175	-		Sama_3230	0.55	-1.0
3,824,175	-		Sama_3230	0.55	-1.2
3,824,195	-		Sama_3230	0.59	-0.0
3,824,243	+		Sama_3230	0.68	-1.0
3,824,270	+		Sama_3230	0.74	-1.2
3,824,270	+		Sama_3230	0.74	+0.2
3,824,270	+		Sama_3230	0.74	-1.0
3,824,270	+		Sama_3230	0.74	-0.2
3,824,270	+		Sama_3230	0.74	+0.8
3,824,270	+		Sama_3230	0.74	-2.2
3,824,270	+		Sama_3230	0.74	-3.4
3,824,271	-		Sama_3230	0.74	+1.4
3,824,271	-		Sama_3230	0.74	-1.5
3,824,272	+		Sama_3230	0.74	+0.4
3,824,272	+		Sama_3230	0.74	-2.3
3,824,301	+		Sama_3230	0.80	-0.5
3,824,301	+		Sama_3230	0.80	-0.0
3,824,301	+		Sama_3230	0.80	+0.1
3,824,301	+		Sama_3230	0.80	+0.1
3,824,301	+		Sama_3230	0.80	-3.2
3,824,301	+		Sama_3230	0.80	-1.0
3,824,301	+		Sama_3230	0.80	-0.4
3,824,301	+		Sama_3230	0.80	-1.2
3,824,302	-		Sama_3230	0.80	+0.4
3,824,302	-		Sama_3230	0.80	+1.8
3,824,302	-		Sama_3230	0.80	-1.2
3,824,339	+		Sama_3230	0.87	-1.1
3,824,339	+		Sama_3230	0.87	-0.3
3,824,340	-		Sama_3230	0.88	+0.4
3,824,400	-				-0.6
3,824,400	-				-0.1
3,824,459	+		Sama_3231	0.11	+1.0
3,824,459	+		Sama_3231	0.11	+0.4
3,824,466	-		Sama_3231	0.14	-0.6
3,824,466	-		Sama_3231	0.14	+0.8
3,824,524	+		Sama_3231	0.34	+2.3
3,824,524	+		Sama_3231	0.34	-2.4
3,824,524	+		Sama_3231	0.34	-1.3
3,824,524	+		Sama_3231	0.34	-1.2
3,824,524	+		Sama_3231	0.34	-2.2
3,824,524	+		Sama_3231	0.34	-0.2
3,824,524	+		Sama_3231	0.34	-1.1
3,824,525	-		Sama_3231	0.35	-1.6
3,824,525	-		Sama_3231	0.35	-0.5
3,824,525	-		Sama_3231	0.35	+0.4
3,824,525	-		Sama_3231	0.35	-0.8
3,824,525	-		Sama_3231	0.35	-1.8
3,824,600	+		Sama_3231	0.61	-2.3
3,824,600	+		Sama_3231	0.61	-2.1
3,824,600	+		Sama_3231	0.61	-0.2
3,824,600	+		Sama_3231	0.61	-1.5
3,824,601	-		Sama_3231	0.62	+0.6
3,824,601	-		Sama_3231	0.62	+1.1
3,824,618	+		Sama_3231	0.68	+1.1
3,824,619	-		Sama_3231	0.68	+2.6
3,824,619	-		Sama_3231	0.68	+0.5
3,824,624	+		Sama_3231	0.70	-2.2
3,824,624	+		Sama_3231	0.70	-0.3
3,824,624	+		Sama_3231	0.70	+0.6
3,824,625	-		Sama_3231	0.70	-0.2
3,824,625	-		Sama_3231	0.70	-0.1
3,824,625	-		Sama_3231	0.70	+0.6
3,824,632	+		Sama_3231	0.73	-1.0
3,824,632	+		Sama_3231	0.73	-0.3
3,824,661	+		Sama_3231	0.83	-0.6
3,824,662	-		Sama_3231	0.83	-0.3