Strain Fitness in Shewanella amazonensis SB2B around Sama_3127

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,708,047	+				-0.8
3,708,047	+				+0.3
3,708,047	+				-2.7
3,708,047	+				-1.3
3,708,047	+				+0.4
3,708,048	-				-0.3
3,708,048	-				-0.1
3,708,048	-				-0.0
3,708,052	+				+0.2
3,708,081	+				+2.3
3,708,101	-				+0.7
3,708,101	-				+0.9
3,708,114	+				+2.3
3,708,129	-				+0.7
3,708,171	-				-0.0
3,708,262	+		Sama_3127	0.12	-1.5
3,708,301	+		Sama_3127	0.19	+1.8
3,708,301	+		Sama_3127	0.19	+0.8
3,708,301	+		Sama_3127	0.19	+0.0
3,708,302	-		Sama_3127	0.19	+0.2
3,708,302	-		Sama_3127	0.19	-1.2
3,708,355	+		Sama_3127	0.29	-0.5
3,708,355	+		Sama_3127	0.29	+1.6
3,708,356	-		Sama_3127	0.29	+1.2
3,708,393	+		Sama_3127	0.36	+1.8
3,708,472	-		Sama_3127	0.51	-0.2
3,708,496	+		Sama_3127	0.55	+1.8
3,708,712	-				-0.5
3,708,779	+				+0.0
3,708,779	+				-3.4
3,708,779	+				-2.6
3,708,779	+				-1.0
3,708,779	+				+0.0
3,708,779	+				+0.8
3,708,779	+				-1.5
3,708,779	+				+0.2
3,708,779	+				+0.9
3,708,780	-				-2.3
3,708,780	-				-2.3
3,708,780	-				-0.2
3,708,780	-				-1.0
3,708,780	-				+0.4
3,708,780	-				+1.3
3,708,780	-				+0.8
3,708,782	+				+1.1
3,708,782	+				-0.2
3,708,782	+				-2.0
3,708,782	+				+1.4
3,708,782	+				-0.1
3,708,782	+				+2.6
3,708,782	+				+1.8
3,708,783	-				+2.2
3,708,783	-				+1.1
3,708,783	-				-0.9
3,708,783	-				-0.4
3,708,824	+				-0.0
3,708,936	-				-1.0
3,708,976	-				-1.8
3,709,025	+				+0.7
3,709,025	+				-1.8
3,709,026	-				-1.5
3,709,091	+				-1.2
3,709,091	+				+1.5
3,709,091	+				+1.9
3,709,091	+				+1.8
3,709,091	+				-0.3
3,709,092	-				-0.3
3,709,092	-				-0.5
3,709,164	+				+2.1
3,709,164	+				+2.6
3,709,164	+				-2.3
3,709,164	+				-0.2
3,709,164	+				+2.2
3,709,164	+				+1.2
3,709,164	+				+1.3
3,709,164	+				+1.8
3,709,165	-				-1.0
3,709,165	-				+2.1
3,709,165	-				+2.6
3,709,165	-				-0.7
3,709,165	-				+0.1
3,709,165	-				+0.5
3,709,165	-				-1.4
3,709,165	-				+0.5
3,709,165	-				+2.1
3,709,165	-				+1.0
3,709,165	-				-0.8
3,709,168	+				+0.3
3,709,168	+				-0.7
3,709,168	+				+0.2
3,709,168	+				+0.5
3,709,168	+				+0.9
3,709,168	+				-0.1
3,709,169	-				-1.1
3,709,169	-				-0.2
3,709,169	-				+0.7
3,709,169	-				-0.6
3,709,169	-				-0.0
3,709,169	-				+1.2
3,709,169	-				+0.7
3,709,169	-				+0.3
3,709,169	-				+1.3
3,709,315	-		Sama_3128	0.16	-1.5
3,709,315	-		Sama_3128	0.16	-0.8
3,709,390	+		Sama_3128	0.19	+2.4
3,709,430	+		Sama_3128	0.21	-1.3
3,709,430	+		Sama_3128	0.21	-0.5
3,709,430	+		Sama_3128	0.21	+1.9
3,709,430	+		Sama_3128	0.21	+0.9
3,709,430	+		Sama_3128	0.21	+0.1
3,709,430	+		Sama_3128	0.21	-2.6
3,709,430	+		Sama_3128	0.21	-0.4
3,709,430	+		Sama_3128	0.21	+0.9
3,709,431	-		Sama_3128	0.21	+0.3
3,709,431	-		Sama_3128	0.21	-1.3
3,709,431	-		Sama_3128	0.21	-1.1
3,709,431	-		Sama_3128	0.21	+0.8
3,709,431	-		Sama_3128	0.21	-1.1
3,709,431	-		Sama_3128	0.21	+1.0
3,709,431	-		Sama_3128	0.21	-0.8
3,709,431	-		Sama_3128	0.21	-2.0
3,709,431	-		Sama_3128	0.21	-0.6
3,709,434	+		Sama_3128	0.21	-0.2
3,709,434	+		Sama_3128	0.21	-0.2
3,709,435	-		Sama_3128	0.21	+0.3
3,709,435	-		Sama_3128	0.21	-1.2
3,709,547	+		Sama_3128	0.26	+0.7
3,709,547	+		Sama_3128	0.26	+2.6
3,709,547	+		Sama_3128	0.26	-0.1
3,709,547	+		Sama_3128	0.26	+0.7
3,709,547	+		Sama_3128	0.26	+0.8
3,709,547	+		Sama_3128	0.26	+0.5
3,709,547	+		Sama_3128	0.26	-0.2
3,709,547	+		Sama_3128	0.26	+0.5
3,709,547	+		Sama_3128	0.26	+1.2
3,709,547	+		Sama_3128	0.26	+0.1
3,709,547	+		Sama_3128	0.26	-2.3
3,709,547	+		Sama_3128	0.26	-0.2
3,709,547	+		Sama_3128	0.26	-0.9
3,709,547	+		Sama_3128	0.26	+1.0
3,709,548	-		Sama_3128	0.26	+1.3
3,709,548	-		Sama_3128	0.26	-1.3
3,709,548	-		Sama_3128	0.26	-1.2
3,709,548	-		Sama_3128	0.26	+1.3
3,709,548	-		Sama_3128	0.26	-0.7
3,709,548	-		Sama_3128	0.26	-1.6
3,709,548	-		Sama_3128	0.26	+1.3
3,709,548	-		Sama_3128	0.26	-2.3
3,709,548	-		Sama_3128	0.26	+1.4
3,709,548	-		Sama_3128	0.26	-1.7
3,709,548	-		Sama_3128	0.26	-0.5
3,709,559	+		Sama_3128	0.26	+1.4
3,709,559	+		Sama_3128	0.26	-0.8
3,709,559	+		Sama_3128	0.26	-2.1
3,709,559	+		Sama_3128	0.26	-1.1
3,709,559	+		Sama_3128	0.26	-2.6
3,709,559	+		Sama_3128	0.26	+2.6
3,709,559	+		Sama_3128	0.26	-0.8
3,709,560	-		Sama_3128	0.26	+0.0
3,709,560	-		Sama_3128	0.26	+0.4
3,709,560	-		Sama_3128	0.26	+2.1
3,709,560	-		Sama_3128	0.26	-1.0
3,709,561	+		Sama_3128	0.26	-2.5
3,709,561	+		Sama_3128	0.26	-1.0
3,709,561	+		Sama_3128	0.26	-2.7
3,709,562	-		Sama_3128	0.26	+1.4
3,709,562	-		Sama_3128	0.26	-2.6
3,709,562	-		Sama_3128	0.26	-0.7
3,709,562	-		Sama_3128	0.26	+2.6
3,709,562	-		Sama_3128	0.26	-0.8
3,709,571	+		Sama_3128	0.27	+0.6
3,709,571	+		Sama_3128	0.27	+2.9
3,709,572	-		Sama_3128	0.27	-1.2
3,709,634	+		Sama_3128	0.29	+1.2
3,709,634	+		Sama_3128	0.29	-1.1
3,709,699	-		Sama_3128	0.32	+0.8