Strain Fitness in Shewanella amazonensis SB2B around Sama_3124

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,703,653	+		Sama_3123	0.58	+0.2
3,703,655	+		Sama_3123	0.58	+1.5
3,703,655	+		Sama_3123	0.58	+0.0
3,703,655	+		Sama_3123	0.58	+0.1
3,703,655	+		Sama_3123	0.58	+0.6
3,703,655	+		Sama_3123	0.58	-0.8
3,703,658	+		Sama_3123	0.59	+1.8
3,703,658	+		Sama_3123	0.59	+0.3
3,703,658	+		Sama_3123	0.59	+0.4
3,703,678	+		Sama_3123	0.61	-0.9
3,703,679	-		Sama_3123	0.62	-0.8
3,703,792	-		Sama_3123	0.77	+0.4
3,703,821	+		Sama_3123	0.81	-0.3
3,703,852	+		Sama_3123	0.85	+0.8
3,703,857	+		Sama_3123	0.85	-0.1
3,703,901	-				-2.8
3,703,926	-				+0.0
3,704,022	+				+0.0
3,704,022	+				-1.0
3,704,022	+				-0.0
3,704,025	-				-1.1
3,704,025	-				-1.5
3,704,025	-				-0.6
3,704,037	-				+2.2
3,704,043	+				+0.8
3,704,082	-				+1.7
3,704,121	+				+1.5
3,704,121	+				+1.4
3,704,122	-				-3.2
3,704,122	-				-1.1
3,704,122	-				+0.0
3,704,145	-				-1.6
3,704,145	-				+0.3
3,704,263	-				+1.8
3,704,263	-				-1.2
3,704,269	-				-1.4
3,704,280	-				-1.5
3,704,280	-				+1.8
3,704,284	+				+0.5
3,704,284	+				+1.7
3,704,284	+				+0.4
3,704,284	+				+0.4
3,704,285	-				+1.6
3,704,285	-				-1.5
3,704,285	-				+0.0
3,704,285	-				-1.8
3,704,285	-				+0.0
3,704,285	-				+1.2
3,704,285	-				-0.3
3,704,285	-				+3.1
3,704,317	+				+0.8
3,704,317	+				-0.2
3,704,317	+				-0.9
3,704,318	-				-0.3
3,704,363	+				-1.7
3,704,386	+				-1.6
3,704,386	+				+1.6
3,704,386	+				+1.8
3,704,386	+				+1.8
3,704,387	-				-0.3
3,704,387	-				-1.5
3,704,387	-				-0.8
3,704,387	-				-2.1
3,704,387	-				-0.2
3,704,387	-				+1.2
3,704,387	-				-1.9
3,704,387	-				-2.3
3,704,387	-				+0.7
3,704,387	-				-0.1
3,704,482	-				-0.1
3,704,500	-				-0.5
3,704,506	-				-1.2
3,704,506	-				-0.1
3,704,506	-				+0.8
3,704,506	-				+0.0
3,704,506	-				+0.4
3,704,506	-				+0.8
3,704,549	-				-1.0
3,706,199	-				-1.6
3,706,199	-				-1.0
3,706,207	-				+0.2
3,706,207	-				+0.2
3,706,580	-				+0.1
3,706,580	-				-2.0
3,706,580	-				-0.2
3,706,580	-				-0.5
3,706,580	-				-2.8
3,706,580	-				-2.9
3,706,580	-				-0.3
3,706,580	-				-1.9
3,706,580	-				+0.0
3,706,580	-				-1.0
3,706,582	-				-1.2
3,706,582	-				-0.5
3,706,674	-				+0.0
3,706,674	-				+1.5