Strain Fitness in Shewanella amazonensis SB2B around Sama_3068

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,645,594	+		Sama_3067	0.62	+1.0
3,645,594	+		Sama_3067	0.62	-1.2
3,645,595	-		Sama_3067	0.62	-0.5
3,645,595	-		Sama_3067	0.62	-0.7
3,645,595	-		Sama_3067	0.62	+0.5
3,645,646	+		Sama_3067	0.64	+1.1
3,645,647	-		Sama_3067	0.65	-1.9
3,645,657	+		Sama_3067	0.65	+2.5
3,645,657	+		Sama_3067	0.65	-0.9
3,645,658	-		Sama_3067	0.65	+0.2
3,645,658	-		Sama_3067	0.65	+0.2
3,645,695	+		Sama_3067	0.67	-0.5
3,645,695	+		Sama_3067	0.67	-1.7
3,645,696	-		Sama_3067	0.67	-1.2
3,645,756	+		Sama_3067	0.69	-1.4
3,645,816	+		Sama_3067	0.71	-2.7
3,645,817	-		Sama_3067	0.72	-0.3
3,645,817	-		Sama_3067	0.72	-0.1
3,645,900	+		Sama_3067	0.75	-2.4
3,645,901	-		Sama_3067	0.75	+0.6
3,645,901	-		Sama_3067	0.75	-1.3
3,645,901	-		Sama_3067	0.75	+0.2
3,645,901	-		Sama_3067	0.75	-2.1
3,645,962	-		Sama_3067	0.78	-1.0
3,645,962	-		Sama_3067	0.78	-1.9
3,645,994	+		Sama_3067	0.79	+0.1
3,645,994	+		Sama_3067	0.79	+0.8
3,645,995	-		Sama_3067	0.79	-0.8
3,645,995	-		Sama_3067	0.79	-1.8
3,645,995	-		Sama_3067	0.79	-1.5
3,645,995	-		Sama_3067	0.79	-0.3
3,645,995	-		Sama_3067	0.79	-1.2
3,645,995	-		Sama_3067	0.79	+0.8
3,646,038	+		Sama_3067	0.81	-2.7
3,646,038	+		Sama_3067	0.81	-2.1
3,646,038	+		Sama_3067	0.81	-0.8
3,646,038	+		Sama_3067	0.81	-2.2
3,646,039	-		Sama_3067	0.81	-1.3
3,646,039	-		Sama_3067	0.81	-0.7
3,646,039	-		Sama_3067	0.81	-2.4
3,646,039	-		Sama_3067	0.81	-1.8
3,646,039	-		Sama_3067	0.81	+0.5
3,646,039	-		Sama_3067	0.81	-0.3
3,646,142	-		Sama_3067	0.85	-0.2
3,646,155	+		Sama_3067	0.85	-0.4
3,646,155	+		Sama_3067	0.85	-1.7
3,646,155	+		Sama_3067	0.85	-0.8
3,646,156	-		Sama_3067	0.85	-2.9
3,646,156	-		Sama_3067	0.85	-1.9
3,646,181	-		Sama_3067	0.87	+1.8
3,646,246	+		Sama_3067	0.89	-1.9
3,646,390	+				-1.4
3,646,391	-				-0.6
3,646,438	+				+0.5
3,646,439	-				-1.7
3,646,467	+				-0.3
3,646,501	+				+3.8
3,646,551	+				-2.1
3,646,551	+				-2.5
3,646,552	-				-1.2
3,646,552	-				-1.5
3,646,603	+				-3.3
3,646,603	+				-1.0
3,646,604	-				-3.2
3,646,604	-				-0.8
3,646,604	-				-1.0
3,646,604	-				-3.6
3,646,657	+		Sama_3068	0.18	-2.1
3,646,657	+		Sama_3068	0.18	-2.7
3,646,657	+		Sama_3068	0.18	-1.7
3,646,658	-		Sama_3068	0.18	-2.0
3,646,658	-		Sama_3068	0.18	-2.4
3,646,658	-		Sama_3068	0.18	-2.1
3,646,658	-		Sama_3068	0.18	-4.1
3,646,658	-		Sama_3068	0.18	-2.0
3,646,671	+		Sama_3068	0.20	+0.8
3,646,672	-		Sama_3068	0.20	-2.2
3,646,695	+		Sama_3068	0.24	+0.8
3,646,695	+		Sama_3068	0.24	-2.7
3,646,696	-		Sama_3068	0.24	-2.3
3,646,725	+		Sama_3068	0.29	-3.0
3,646,726	-		Sama_3068	0.29	-2.4
3,646,780	-		Sama_3068	0.38	-0.8
3,646,785	+		Sama_3068	0.39	-2.8
3,646,785	+		Sama_3068	0.39	-1.4
3,646,785	+		Sama_3068	0.39	-2.7
3,646,786	-		Sama_3068	0.39	-3.6
3,646,786	-		Sama_3068	0.39	-2.0
3,646,786	-		Sama_3068	0.39	-2.4
3,646,786	-		Sama_3068	0.39	-2.2
3,646,786	-		Sama_3068	0.39	-1.9
3,646,786	-		Sama_3068	0.39	-1.5
3,646,786	-		Sama_3068	0.39	-1.0
3,646,786	-		Sama_3068	0.39	-3.5
3,646,786	-		Sama_3068	0.39	-3.0
3,646,786	-		Sama_3068	0.39	-3.0
3,646,812	-		Sama_3068	0.43	-1.0
3,646,818	+		Sama_3068	0.44	-2.5
3,646,818	+		Sama_3068	0.44	-0.5
3,646,818	+		Sama_3068	0.44	-0.5
3,646,818	+		Sama_3068	0.44	+0.2
3,646,818	+		Sama_3068	0.44	-1.2
3,646,818	+		Sama_3068	0.44	-1.9
3,646,818	+		Sama_3068	0.44	-1.8
3,646,818	+		Sama_3068	0.44	-3.1
3,646,818	+		Sama_3068	0.44	-2.0
3,646,818	+		Sama_3068	0.44	-2.0
3,646,819	-		Sama_3068	0.44	-2.5
3,646,819	-		Sama_3068	0.44	-1.5
3,646,819	-		Sama_3068	0.44	-0.8
3,646,819	-		Sama_3068	0.44	-2.4
3,646,819	-		Sama_3068	0.44	-3.0
3,646,819	-		Sama_3068	0.44	-3.6
3,646,819	-		Sama_3068	0.44	-3.1
3,646,819	-		Sama_3068	0.44	-3.9
3,646,819	-		Sama_3068	0.44	-3.0
3,646,819	-		Sama_3068	0.44	-2.7
3,646,819	-		Sama_3068	0.44	-3.4
3,646,819	-		Sama_3068	0.44	-3.3
3,646,819	-		Sama_3068	0.44	-1.8
3,646,819	-		Sama_3068	0.44	-2.0
3,646,819	-		Sama_3068	0.44	-1.7
3,646,833	+		Sama_3068	0.47	+0.2
3,646,833	+		Sama_3068	0.47	-2.9
3,646,833	+		Sama_3068	0.47	-2.1
3,646,833	+		Sama_3068	0.47	-2.3
3,646,928	+		Sama_3068	0.62	-3.4
3,646,929	-		Sama_3068	0.62	-1.8
3,646,929	-		Sama_3068	0.62	-3.6
3,646,929	-		Sama_3068	0.62	-0.2
3,646,929	-		Sama_3068	0.62	-0.2
3,646,929	-		Sama_3068	0.62	-1.2
3,646,939	+		Sama_3068	0.64	-3.3
3,646,965	+		Sama_3068	0.68	-1.8
3,646,965	+		Sama_3068	0.68	-1.5
3,647,088	+		Sama_3068	0.88	-1.2
3,647,088	+		Sama_3068	0.88	-0.8
3,647,089	-		Sama_3068	0.88	-0.5
3,647,089	-		Sama_3068	0.88	-1.9
3,647,089	-		Sama_3068	0.88	-1.9
3,647,096	+		Sama_3068	0.89	-3.5
3,647,096	+		Sama_3068	0.89	-1.9
3,647,096	+		Sama_3068	0.89	-1.9
3,647,096	+		Sama_3068	0.89	-2.8
3,647,096	+		Sama_3068	0.89	-0.8
3,647,096	+		Sama_3068	0.89	-0.8
3,647,097	-		Sama_3068	0.89	-2.8
3,647,097	-		Sama_3068	0.89	-3.8
3,647,097	-		Sama_3068	0.89	-4.0
3,647,097	-		Sama_3068	0.89	-3.3
3,647,097	-		Sama_3068	0.89	-1.8
3,647,097	-		Sama_3068	0.89	-2.5
3,647,097	-		Sama_3068	0.89	-2.5
3,647,097	-		Sama_3068	0.89	-2.5
3,647,097	-		Sama_3068	0.89	-1.9
3,647,161	+				-1.9
3,647,161	+				-2.1
3,647,161	+				-1.2
3,647,161	+				-1.8
3,647,162	-				+1.1
3,647,186	+				-1.0
3,647,196	-				+1.6
3,647,204	+				-2.8
3,647,205	-				+0.5
3,647,205	-				-1.0
3,647,205	-				-0.4
3,647,207	-				-1.4
3,647,207	-				+1.3
3,647,207	-				-0.1
3,647,207	-				-0.8
3,647,245	+				-2.2
3,647,246	-				+0.8
3,647,246	-				+0.0
3,647,275	+				-1.7
3,647,276	-				+2.3
3,647,276	-				-1.5
3,647,276	-				+2.1