Strain Fitness in Shewanella amazonensis SB2B around Sama_3052

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,628,336	+		Sama_3050	0.53	+0.5
3,628,336	+		Sama_3050	0.53	+1.9
3,628,366	+		Sama_3050	0.56	-2.1
3,628,367	-		Sama_3050	0.56	-0.7
3,628,367	-		Sama_3050	0.56	-1.0
3,628,410	-		Sama_3050	0.61	+1.1
3,628,481	+		Sama_3050	0.68	-0.4
3,628,481	+		Sama_3050	0.68	-0.9
3,628,541	+		Sama_3050	0.74	-0.9
3,628,541	+		Sama_3050	0.74	+0.7
3,628,541	+		Sama_3050	0.74	-0.3
3,628,541	+		Sama_3050	0.74	+1.9
3,628,542	-		Sama_3050	0.74	+0.2
3,628,542	-		Sama_3050	0.74	+0.4
3,628,542	-		Sama_3050	0.74	-1.9
3,628,542	-		Sama_3050	0.74	-0.8
3,628,544	+		Sama_3050	0.75	+1.3
3,628,544	+		Sama_3050	0.75	-0.5
3,628,544	+		Sama_3050	0.75	+0.1
3,628,545	-		Sama_3050	0.75	-1.1
3,628,545	-		Sama_3050	0.75	+0.4
3,628,545	-		Sama_3050	0.75	+0.7
3,628,550	+		Sama_3050	0.75	-0.8
3,628,550	+		Sama_3050	0.75	+1.4
3,628,568	+		Sama_3050	0.77	-1.2
3,628,568	+		Sama_3050	0.77	-2.4
3,628,569	-		Sama_3050	0.77	-0.8
3,628,569	-		Sama_3050	0.77	+0.5
3,628,569	-		Sama_3050	0.77	-1.5
3,628,569	-		Sama_3050	0.77	+2.4
3,628,572	-		Sama_3050	0.77	-0.9
3,628,572	-		Sama_3050	0.77	+0.9
3,628,572	-		Sama_3050	0.77	+1.1
3,628,572	-		Sama_3050	0.77	-0.8
3,628,572	-		Sama_3050	0.77	+2.0
3,628,619	+		Sama_3050	0.82	+1.8
3,628,620	-		Sama_3050	0.82	-0.5
3,628,645	+		Sama_3050	0.85	-1.5
3,628,646	-		Sama_3050	0.85	-1.0
3,628,654	-		Sama_3050	0.86	-1.9
3,628,732	+				+1.1
3,628,732	+				+2.0
3,628,733	-				+0.5
3,628,733	-				-0.6
3,628,733	-				+1.0
3,628,746	+				+1.8
3,628,746	+				+1.5
3,628,747	-				-0.0
3,628,747	-				-1.4
3,628,747	-				+0.2
3,628,747	-				-0.3
3,628,747	-				-2.6
3,628,747	-				-0.4
3,628,747	-				-0.5
3,628,747	-				+0.2
3,628,747	-				-1.8
3,628,747	-				-1.6
3,628,747	-				-2.2
3,628,747	-				+1.1
3,628,747	-				-1.1
3,628,806	+				+0.7
3,628,807	-				-0.5
3,628,807	-				+2.3
3,628,807	-				-0.2
3,628,807	-				+0.8
3,628,807	-				+1.5
3,628,868	+		Sama_3051	0.13	+0.1
3,628,868	+		Sama_3051	0.13	+1.9
3,628,869	-		Sama_3051	0.13	+3.2
3,628,869	-		Sama_3051	0.13	+1.2
3,628,869	-		Sama_3051	0.13	+1.0
3,628,869	-		Sama_3051	0.13	-0.7
3,628,897	+		Sama_3051	0.19	+0.0
3,628,897	+		Sama_3051	0.19	-2.0
3,628,987	+		Sama_3051	0.38	+1.7
3,628,987	+		Sama_3051	0.38	-1.0
3,628,988	-		Sama_3051	0.38	+2.0
3,628,988	-		Sama_3051	0.38	-0.2
3,629,029	+		Sama_3051	0.47	+0.5
3,629,029	+		Sama_3051	0.47	+2.3
3,629,029	+		Sama_3051	0.47	+1.3
3,629,030	-		Sama_3051	0.47	+1.1
3,629,030	-		Sama_3051	0.47	+0.5
3,629,030	-		Sama_3051	0.47	+0.7
3,629,030	-		Sama_3051	0.47	+0.0
3,629,030	-		Sama_3051	0.47	-0.9
3,629,030	-		Sama_3051	0.47	+0.9
3,629,030	-		Sama_3051	0.47	+3.1
3,629,030	-		Sama_3051	0.47	+0.1
3,629,033	+		Sama_3051	0.47	+1.3
3,629,033	+		Sama_3051	0.47	+0.2
3,629,034	-		Sama_3051	0.48	+3.3
3,629,034	-		Sama_3051	0.48	+1.7
3,629,034	-		Sama_3051	0.48	+1.3
3,629,034	-		Sama_3051	0.48	-1.5
3,629,034	-		Sama_3051	0.48	+2.1
3,629,034	-		Sama_3051	0.48	+2.8
3,629,034	-		Sama_3051	0.48	+0.9
3,629,034	-		Sama_3051	0.48	-1.4
3,629,034	-		Sama_3051	0.48	+0.8
3,629,034	-		Sama_3051	0.48	+2.3
3,629,136	+		Sama_3051	0.69	-0.1
3,629,137	-		Sama_3051	0.69	+0.9
3,629,137	+		Sama_3051	0.69	+0.6
3,629,147	-		Sama_3051	0.71	-2.2
3,629,147	-		Sama_3051	0.71	+1.6
3,629,147	-		Sama_3051	0.71	+0.8
3,629,149	+		Sama_3051	0.72	-0.8
3,629,189	+		Sama_3051	0.80	-2.2
3,629,189	+		Sama_3051	0.80	+1.5
3,629,189	+		Sama_3051	0.80	+1.0
3,629,190	-		Sama_3051	0.80	-1.5
3,629,190	-		Sama_3051	0.80	-0.5
3,629,190	-		Sama_3051	0.80	+1.8
3,629,192	+		Sama_3051	0.81	-0.4
3,629,192	+		Sama_3051	0.81	-1.4
3,629,193	-		Sama_3051	0.81	+2.9
3,629,194	+		Sama_3051	0.81	+2.9
3,629,194	+		Sama_3051	0.81	+1.9
3,629,194	+		Sama_3051	0.81	+0.4
3,629,195	-		Sama_3051	0.81	+0.2
3,629,242	+				-0.5
3,629,275	+				+0.1
3,629,275	+				-1.0
3,629,275	+				+1.7
3,629,275	+				-2.7
3,629,275	+				+1.0
3,629,275	+				+1.7
3,629,276	-				-2.2
3,629,276	-				-2.0
3,629,276	-				-0.1
3,629,276	-				-1.5
3,629,276	-				+2.0
3,629,276	-				-1.1
3,629,276	-				-2.7
3,629,276	-				+1.1
3,629,298	-				+0.9
3,629,298	-				+0.1
3,629,298	-				+0.3
3,629,321	+				-0.1
3,629,321	+				+0.2
3,629,321	+				-0.0
3,629,322	-				-1.5
3,629,322	-				-0.9
3,629,326	+				+1.3
3,629,327	-				-0.5
3,629,356	+				+0.4
3,629,356	+				+0.9
3,629,357	-				+0.4
3,629,357	-				+1.2
3,629,367	-				-0.8
3,629,393	-		Sama_3052	0.10	+2.6
3,629,393	-		Sama_3052	0.10	-2.7
3,629,402	+		Sama_3052	0.12	+2.7
3,629,402	+		Sama_3052	0.12	+1.1
3,629,402	+		Sama_3052	0.12	+0.8
3,629,402	+		Sama_3052	0.12	-0.4
3,629,402	+		Sama_3052	0.12	-2.2
3,629,402	+		Sama_3052	0.12	-1.7
3,629,402	+		Sama_3052	0.12	-1.4
3,629,402	+		Sama_3052	0.12	-2.0
3,629,403	-		Sama_3052	0.12	-2.0
3,629,403	-		Sama_3052	0.12	-0.5
3,629,403	-		Sama_3052	0.12	-0.3
3,629,403	-		Sama_3052	0.12	+1.1
3,629,403	-		Sama_3052	0.12	+0.7
3,629,403	-		Sama_3052	0.12	-2.0
3,629,406	+		Sama_3052	0.12	-1.1
3,629,406	+		Sama_3052	0.12	+0.6
3,629,406	+		Sama_3052	0.12	+0.3
3,629,407	-		Sama_3052	0.12	-0.2
3,629,407	-		Sama_3052	0.12	-2.1
3,629,407	-		Sama_3052	0.12	+1.3
3,629,407	-		Sama_3052	0.12	+0.1
3,629,407	-		Sama_3052	0.12	-0.3
3,629,407	-		Sama_3052	0.12	+0.5
3,629,424	+		Sama_3052	0.15	+1.5
3,629,424	+		Sama_3052	0.15	+1.9
3,629,424	+		Sama_3052	0.15	-0.2
3,629,425	-		Sama_3052	0.15	-0.2
3,629,425	-		Sama_3052	0.15	-1.9
3,629,425	-		Sama_3052	0.15	-0.5
3,629,425	-		Sama_3052	0.15	+1.3
3,629,425	-		Sama_3052	0.15	-1.9
3,629,429	+		Sama_3052	0.15	-0.8
3,629,429	+		Sama_3052	0.15	+1.0
3,629,429	+		Sama_3052	0.15	+1.5
3,629,430	-		Sama_3052	0.15	-2.5
3,629,430	-		Sama_3052	0.15	+0.7
3,629,430	-		Sama_3052	0.15	-0.7
3,629,430	-		Sama_3052	0.15	+1.2
3,629,467	+		Sama_3052	0.20	-1.0
3,629,468	-		Sama_3052	0.21	-1.2
3,629,468	-		Sama_3052	0.21	-1.5
3,629,468	-		Sama_3052	0.21	-1.9
3,629,468	-		Sama_3052	0.21	+0.2
3,629,537	-		Sama_3052	0.30	-0.8
3,629,568	+		Sama_3052	0.34	+0.8
3,629,586	-		Sama_3052	0.36	-0.8
3,629,586	-		Sama_3052	0.36	+1.1
3,629,627	+		Sama_3052	0.42	+0.1
3,629,636	+		Sama_3052	0.43	+0.3
3,629,636	+		Sama_3052	0.43	-0.3
3,629,636	+		Sama_3052	0.43	-0.6
3,629,637	-		Sama_3052	0.43	-0.5
3,629,637	-		Sama_3052	0.43	-2.1
3,629,641	+		Sama_3052	0.44	-1.7
3,629,641	+		Sama_3052	0.44	-0.9
3,629,641	+		Sama_3052	0.44	+1.0
3,629,642	-		Sama_3052	0.44	-0.8
3,629,642	-		Sama_3052	0.44	+1.4
3,629,642	-		Sama_3052	0.44	-0.2
3,629,642	-		Sama_3052	0.44	-0.5
3,629,664	+		Sama_3052	0.47	-1.8
3,629,665	-		Sama_3052	0.47	+0.5
3,629,735	+		Sama_3052	0.57	-0.4
3,629,736	-		Sama_3052	0.57	-0.8
3,629,736	-		Sama_3052	0.57	+0.7
3,629,736	-		Sama_3052	0.57	-0.9
3,629,744	-		Sama_3052	0.58	-1.0
3,629,782	+		Sama_3052	0.63	-2.0
3,629,783	-		Sama_3052	0.63	-0.1
3,629,783	-		Sama_3052	0.63	+1.0
3,629,783	-		Sama_3052	0.63	+0.2
3,629,783	-		Sama_3052	0.63	+0.8
3,629,824	+		Sama_3052	0.69	+1.8
3,629,825	-		Sama_3052	0.69	+0.2
3,629,825	-		Sama_3052	0.69	+1.8
3,629,825	-		Sama_3052	0.69	-0.9
3,629,831	+		Sama_3052	0.70	+0.2
3,629,831	+		Sama_3052	0.70	-1.9
3,629,832	-		Sama_3052	0.70	+0.1
3,629,832	-		Sama_3052	0.70	-0.8
3,629,889	-		Sama_3052	0.77	-0.7
3,629,935	+		Sama_3052	0.84	+1.8
3,629,936	-		Sama_3052	0.84	-0.4
3,629,936	-		Sama_3052	0.84	-1.7
3,629,936	-		Sama_3052	0.84	-1.9
3,629,936	-		Sama_3052	0.84	-0.4
3,629,936	-		Sama_3052	0.84	-1.2
3,630,005	-				-1.5
3,630,045	-				+0.2
3,630,045	-				-2.4
3,630,091	-				-0.1
3,630,091	-				-2.7
3,630,097	-				+1.0
3,630,123	+				+0.8
3,630,146	-				-1.4
3,630,153	-		Sama_3053	0.11	-0.6
3,630,171	+		Sama_3053	0.20	-1.3
3,630,197	-		Sama_3053	0.33	+0.6
3,630,197	-		Sama_3053	0.33	+0.6
3,630,301	+		Sama_3053	0.86	+0.5
3,630,301	+		Sama_3053	0.86	-1.0
3,630,301	+		Sama_3053	0.86	+0.7
3,630,302	-		Sama_3053	0.86	+2.2
3,630,317	-				+0.5
3,630,323	-				+0.8
3,630,323	-				-0.0
3,630,323	-				-0.8
3,630,349	+				+0.8
3,630,373	+				-2.4
3,630,373	+				-0.6
3,630,374	-				-1.2
3,630,386	+				-1.0
3,630,386	+				-0.1
3,630,387	-				+0.5
3,630,387	-				+0.9
3,630,412	-				+0.5
3,630,420	+				+1.8
3,630,420	+				-1.2
3,630,420	+				-0.7
3,630,421	-				-1.2
3,630,466	+				+1.3
3,630,466	+				+0.1
3,630,467	-				-0.1
3,630,560	+		Sama_3054	0.35	-0.8
3,630,561	-		Sama_3054	0.36	-0.0
3,630,642	+		Sama_3054	0.66	-2.2
3,630,643	-		Sama_3054	0.66	-0.6
3,630,643	-		Sama_3054	0.66	+1.9
3,630,650	+		Sama_3054	0.69	-2.2
3,630,650	+		Sama_3054	0.69	+0.7
3,630,650	+		Sama_3054	0.69	+0.5
3,630,650	+		Sama_3054	0.69	-1.9
3,630,650	+		Sama_3054	0.69	+2.3
3,630,651	-		Sama_3054	0.69	+0.6
3,630,651	-		Sama_3054	0.69	+0.3
3,630,651	-		Sama_3054	0.69	+0.8
3,630,651	-		Sama_3054	0.69	-0.4
3,630,696	-		Sama_3054	0.86	+0.0
3,630,758	+				-0.6
3,630,758	+				-1.0
3,630,759	-				-0.5
3,630,759	-				+0.6
3,630,759	-				+0.4
3,630,772	+				-0.8
3,630,775	+				+0.6
3,630,776	-				-0.5
3,630,776	-				+1.5
3,630,776	-				+1.5
3,630,821	-				-0.6
3,630,895	-				-0.2
3,630,941	+				-0.5
3,630,941	+				+1.2
3,630,941	+				+3.0
3,630,942	-				-0.3
3,630,951	+				-0.7
3,630,952	-				-0.6
3,630,968	-				-1.4
3,630,968	-				-1.1
3,630,987	-				-1.2