Strain Fitness in Shewanella amazonensis SB2B around Sama_3010

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,581,804	+	astD	Sama_3009	0.35	+0.1
3,581,805	-	astD	Sama_3009	0.35	-2.5
3,581,835	+	astD	Sama_3009	0.37	-1.5
3,581,835	+	astD	Sama_3009	0.37	+0.3
3,581,836	-	astD	Sama_3009	0.37	+0.5
3,581,836	-	astD	Sama_3009	0.37	+1.3
3,581,905	+	astD	Sama_3009	0.42	-1.7
3,581,905	+	astD	Sama_3009	0.42	+0.6
3,581,906	-	astD	Sama_3009	0.42	+1.8
3,581,906	-	astD	Sama_3009	0.42	+1.0
3,581,906	-	astD	Sama_3009	0.42	-1.0
3,581,906	-	astD	Sama_3009	0.42	-1.0
3,581,924	+	astD	Sama_3009	0.43	-2.1
3,581,924	+	astD	Sama_3009	0.43	+0.5
3,581,925	-	astD	Sama_3009	0.43	-0.5
3,581,925	-	astD	Sama_3009	0.43	+0.8
3,581,925	-	astD	Sama_3009	0.43	-0.1
3,581,945	+	astD	Sama_3009	0.44	-1.0
3,581,946	-	astD	Sama_3009	0.45	-0.8
3,581,946	-	astD	Sama_3009	0.45	-0.9
3,581,946	-	astD	Sama_3009	0.45	-0.6
3,581,946	-	astD	Sama_3009	0.45	-0.7
3,582,017	+	astD	Sama_3009	0.49	-1.5
3,582,061	+	astD	Sama_3009	0.52	-1.0
3,582,061	+	astD	Sama_3009	0.52	+0.6
3,582,061	+	astD	Sama_3009	0.52	+0.2
3,582,062	-	astD	Sama_3009	0.52	-2.0
3,582,177	-	astD	Sama_3009	0.60	-1.5
3,582,207	+	astD	Sama_3009	0.62	+1.0
3,582,208	-	astD	Sama_3009	0.62	-1.0
3,582,208	-	astD	Sama_3009	0.62	+1.0
3,582,208	-	astD	Sama_3009	0.62	-0.2
3,582,261	+	astD	Sama_3009	0.66	-2.1
3,582,261	+	astD	Sama_3009	0.66	-0.8
3,582,261	+	astD	Sama_3009	0.66	+1.6
3,582,262	-	astD	Sama_3009	0.66	-1.9
3,582,262	-	astD	Sama_3009	0.66	+0.7
3,582,262	-	astD	Sama_3009	0.66	-1.3
3,582,262	-	astD	Sama_3009	0.66	+1.4
3,582,262	-	astD	Sama_3009	0.66	-0.6
3,582,262	-	astD	Sama_3009	0.66	-1.8
3,582,266	+	astD	Sama_3009	0.66	+0.9
3,582,266	+	astD	Sama_3009	0.66	-1.4
3,582,266	+	astD	Sama_3009	0.66	-1.1
3,582,266	+	astD	Sama_3009	0.66	+2.4
3,582,267	-	astD	Sama_3009	0.67	-0.8
3,582,267	-	astD	Sama_3009	0.67	-0.2
3,582,267	-	astD	Sama_3009	0.67	+1.5
3,582,267	-	astD	Sama_3009	0.67	-0.2
3,582,267	-	astD	Sama_3009	0.67	+1.1
3,582,267	-	astD	Sama_3009	0.67	+0.7
3,582,291	+	astD	Sama_3009	0.68	+0.2
3,582,291	+	astD	Sama_3009	0.68	-0.9
3,582,291	+	astD	Sama_3009	0.68	+0.5
3,582,291	+	astD	Sama_3009	0.68	-0.2
3,582,291	+	astD	Sama_3009	0.68	+1.1
3,582,291	+	astD	Sama_3009	0.68	-0.8
3,582,291	+	astD	Sama_3009	0.68	-0.3
3,582,292	-	astD	Sama_3009	0.68	-0.6
3,582,292	-	astD	Sama_3009	0.68	+0.1
3,582,292	-	astD	Sama_3009	0.68	-0.0
3,582,292	-	astD	Sama_3009	0.68	-0.9
3,582,292	-	astD	Sama_3009	0.68	-0.5
3,582,292	-	astD	Sama_3009	0.68	-2.1
3,582,292	-	astD	Sama_3009	0.68	-1.4
3,582,292	-	astD	Sama_3009	0.68	+1.4
3,582,325	+	astD	Sama_3009	0.70	-0.8
3,582,359	+	astD	Sama_3009	0.73	-0.3
3,582,421	+	astD	Sama_3009	0.77	-2.9
3,582,421	+	astD	Sama_3009	0.77	+1.0
3,582,508	-	astD	Sama_3009	0.83	-0.0
3,582,593	+	astD	Sama_3009	0.89	-0.7
3,582,593	+	astD	Sama_3009	0.89	+0.9
3,582,594	-	astD	Sama_3009	0.89	+2.0
3,582,594	-	astD	Sama_3009	0.89	+0.9
3,582,639	+				+1.2
3,582,663	-				-0.7
3,582,663	-				-0.7
3,582,743	+				-0.1
3,582,743	+				-0.1
3,582,744	-				-1.4
3,582,744	-				-0.0
3,582,744	-				-0.8
3,582,766	+				+3.1
3,582,766	+				-1.0
3,582,766	+				-2.9
3,582,766	+				+1.7
3,582,766	+				-1.2
3,582,766	+				-2.5
3,582,766	+				-1.4
3,582,766	+				-0.5
3,582,766	+				-2.5
3,582,767	-				-0.2
3,582,767	-				-1.5
3,582,767	-				+0.0
3,582,767	-				+0.2
3,582,767	-				-0.6
3,582,767	-				+1.6
3,582,767	-				+0.8
3,582,768	+				-0.3
3,582,768	+				-1.7
3,582,768	+				+1.8
3,582,769	-				+0.5
3,582,769	-				-2.9
3,582,834	+				+1.4
3,582,834	+				-1.7
3,582,834	+				+2.1
3,582,834	+				+0.7
3,582,886	+		Sama_3010	0.12	+4.7
3,582,886	+		Sama_3010	0.12	+1.6
3,582,914	+		Sama_3010	0.15	+1.0
3,582,914	+		Sama_3010	0.15	+0.3
3,582,915	-		Sama_3010	0.15	-0.2
3,583,026	+		Sama_3010	0.26	-1.2
3,583,026	+		Sama_3010	0.26	-1.7
3,583,026	+		Sama_3010	0.26	+1.9
3,583,026	+		Sama_3010	0.26	+0.6
3,583,026	+		Sama_3010	0.26	+0.2
3,583,027	-		Sama_3010	0.26	-2.5
3,583,027	-		Sama_3010	0.26	+2.0
3,583,036	+		Sama_3010	0.27	+3.9
3,583,036	+		Sama_3010	0.27	+0.3
3,583,037	-		Sama_3010	0.27	-0.1
3,583,039	-		Sama_3010	0.27	-0.4
3,583,094	+		Sama_3010	0.32	+1.0
3,583,094	+		Sama_3010	0.32	+0.1
3,583,094	+		Sama_3010	0.32	-0.2
3,583,094	+		Sama_3010	0.32	-0.4
3,583,095	-		Sama_3010	0.32	+0.2
3,583,095	-		Sama_3010	0.32	-0.8
3,583,095	-		Sama_3010	0.32	+0.0
3,583,095	-		Sama_3010	0.32	+0.4
3,583,095	-		Sama_3010	0.32	+0.9
3,583,144	+		Sama_3010	0.37	+1.6
3,583,144	+		Sama_3010	0.37	+0.5
3,583,144	+		Sama_3010	0.37	-0.1
3,583,144	+		Sama_3010	0.37	-1.5
3,583,144	+		Sama_3010	0.37	+0.9
3,583,144	+		Sama_3010	0.37	+0.4
3,583,144	+		Sama_3010	0.37	+0.1
3,583,144	+		Sama_3010	0.37	-1.3
3,583,144	+		Sama_3010	0.37	+1.3
3,583,144	+		Sama_3010	0.37	+0.3
3,583,144	+		Sama_3010	0.37	-1.2
3,583,144	+		Sama_3010	0.37	-0.5
3,583,144	+		Sama_3010	0.37	-0.2
3,583,144	+		Sama_3010	0.37	+1.3
3,583,145	-		Sama_3010	0.37	-0.4
3,583,145	-		Sama_3010	0.37	+1.2
3,583,145	-		Sama_3010	0.37	+1.5
3,583,145	-		Sama_3010	0.37	+2.9
3,583,145	-		Sama_3010	0.37	-0.2
3,583,145	-		Sama_3010	0.37	+1.6
3,583,145	-		Sama_3010	0.37	-0.5
3,583,145	-		Sama_3010	0.37	+0.5
3,583,145	-		Sama_3010	0.37	-1.2
3,583,145	-		Sama_3010	0.37	-0.8
3,583,145	-		Sama_3010	0.37	+1.8
3,583,145	-		Sama_3010	0.37	+0.8
3,583,145	-		Sama_3010	0.37	+1.2
3,583,145	-		Sama_3010	0.37	-1.7
3,583,145	-		Sama_3010	0.37	-1.7
3,583,145	-		Sama_3010	0.37	-0.2
3,583,146	+		Sama_3010	0.37	+2.0
3,583,146	+		Sama_3010	0.37	-1.9
3,583,146	+		Sama_3010	0.37	-0.2
3,583,146	+		Sama_3010	0.37	-2.1
3,583,147	-		Sama_3010	0.37	+0.2
3,583,204	+		Sama_3010	0.43	-2.0
3,583,204	+		Sama_3010	0.43	+2.2
3,583,205	-		Sama_3010	0.43	-1.0
3,583,205	-		Sama_3010	0.43	+0.3
3,583,205	-		Sama_3010	0.43	-1.2
3,583,255	+		Sama_3010	0.48	+0.7
3,583,256	-		Sama_3010	0.48	+0.7
3,583,390	+		Sama_3010	0.61	-1.0
3,583,435	+		Sama_3010	0.66	-2.7
3,583,435	+		Sama_3010	0.66	-1.2
3,583,495	+		Sama_3010	0.72	+2.4
3,583,495	+		Sama_3010	0.72	+1.8
3,583,495	+		Sama_3010	0.72	+0.9
3,583,496	-		Sama_3010	0.72	+2.8
3,583,496	-		Sama_3010	0.72	+1.5
3,583,496	-		Sama_3010	0.72	-1.0
3,583,496	-		Sama_3010	0.72	+1.1
3,583,496	-		Sama_3010	0.72	+1.4
3,583,496	-		Sama_3010	0.72	-0.2
3,583,497	+		Sama_3010	0.72	+0.2
3,583,497	+		Sama_3010	0.72	-0.3
3,583,497	+		Sama_3010	0.72	-0.6
3,583,498	-		Sama_3010	0.72	-0.7
3,583,498	-		Sama_3010	0.72	-0.3
3,583,498	-		Sama_3010	0.72	-0.0
3,583,498	-		Sama_3010	0.72	-3.0
3,583,498	-		Sama_3010	0.72	-0.0
3,583,498	-		Sama_3010	0.72	-0.4
3,583,516	+		Sama_3010	0.74	+2.7
3,583,522	+		Sama_3010	0.74	-1.2
3,583,522	+		Sama_3010	0.74	+1.1
3,583,522	+		Sama_3010	0.74	-0.4
3,583,523	-		Sama_3010	0.74	+0.2
3,583,523	-		Sama_3010	0.74	+1.3
3,583,523	-		Sama_3010	0.74	-1.3
3,583,523	-		Sama_3010	0.74	-0.7
3,583,523	-		Sama_3010	0.74	-1.0
3,583,523	-		Sama_3010	0.74	-0.4
3,583,523	-		Sama_3010	0.74	+0.8
3,583,609	+		Sama_3010	0.83	+0.8
3,583,610	-		Sama_3010	0.83	+3.8
3,583,621	+		Sama_3010	0.84	-0.1
3,583,622	-		Sama_3010	0.84	+1.3
3,583,790	+				+1.0
3,583,790	+				-2.2
3,583,791	-				-0.3
3,583,791	-				-1.2
3,583,944	+				+0.3
3,583,944	+				+1.0
3,583,945	-				+0.7
3,583,945	-				-0.9
3,583,945	-				-0.4
3,583,946	+				+2.4
3,583,946	+				+0.2
3,583,946	+				-1.5
3,583,947	-				-1.2
3,583,947	-				-2.4
3,583,947	-				-0.2
3,584,001	+				-1.0
3,584,001	+				-1.4
3,584,001	+				-0.2
3,584,002	-				-0.7
3,584,002	-				-2.5
3,584,002	-				-1.0
3,584,002	-				-0.2
3,584,002	-				-2.0
3,584,031	+				-1.3
3,584,031	+				+0.8
3,584,041	+				-0.3
3,584,042	-				-1.4
3,584,042	-				+0.4
3,584,042	-				-1.1
3,584,042	-				+0.5
3,584,131	+	argD	Sama_3011	0.15	-2.4
3,584,173	+	argD	Sama_3011	0.19	+1.0
3,584,173	+	argD	Sama_3011	0.19	+3.1
3,584,173	+	argD	Sama_3011	0.19	+0.6
3,584,173	+	argD	Sama_3011	0.19	+2.3
3,584,173	+	argD	Sama_3011	0.19	+0.8
3,584,173	+	argD	Sama_3011	0.19	-2.5
3,584,174	-	argD	Sama_3011	0.19	+0.8
3,584,181	-	argD	Sama_3011	0.19	+0.3
3,584,257	-	argD	Sama_3011	0.25	-1.3
3,584,257	-	argD	Sama_3011	0.25	-0.0
3,584,259	+	argD	Sama_3011	0.26	-0.5
3,584,259	+	argD	Sama_3011	0.26	-0.3
3,584,259	+	argD	Sama_3011	0.26	+0.9
3,584,259	+	argD	Sama_3011	0.26	+1.5
3,584,260	-	argD	Sama_3011	0.26	+0.4
3,584,260	-	argD	Sama_3011	0.26	+0.2
3,584,260	-	argD	Sama_3011	0.26	+0.5
3,584,260	-	argD	Sama_3011	0.26	-1.2
3,584,260	-	argD	Sama_3011	0.26	-0.4
3,584,280	+	argD	Sama_3011	0.27	+0.8
3,584,312	+	argD	Sama_3011	0.30	-0.0
3,584,312	+	argD	Sama_3011	0.30	+0.5
3,584,312	+	argD	Sama_3011	0.30	-1.0
3,584,313	-	argD	Sama_3011	0.30	+0.8
3,584,442	+	argD	Sama_3011	0.41	-0.7
3,584,443	-	argD	Sama_3011	0.41	-0.5
3,584,443	-	argD	Sama_3011	0.41	-0.5
3,584,444	+	argD	Sama_3011	0.41	+0.6
3,584,444	+	argD	Sama_3011	0.41	+0.0
3,584,444	+	argD	Sama_3011	0.41	-0.6
3,584,444	+	argD	Sama_3011	0.41	-0.5
3,584,444	+	argD	Sama_3011	0.41	+0.1
3,584,444	+	argD	Sama_3011	0.41	+0.2
3,584,444	+	argD	Sama_3011	0.41	+0.9
3,584,444	+	argD	Sama_3011	0.41	+2.4
3,584,444	+	argD	Sama_3011	0.41	+1.5
3,584,444	+	argD	Sama_3011	0.41	-0.0
3,584,444	+	argD	Sama_3011	0.41	-0.2
3,584,444	+	argD	Sama_3011	0.41	-0.5
3,584,445	-	argD	Sama_3011	0.41	-0.2
3,584,445	-	argD	Sama_3011	0.41	-2.4
3,584,445	-	argD	Sama_3011	0.41	-0.8
3,584,445	-	argD	Sama_3011	0.41	+2.8
3,584,445	-	argD	Sama_3011	0.41	-1.7
3,584,445	-	argD	Sama_3011	0.41	-0.6
3,584,445	-	argD	Sama_3011	0.41	-1.4
3,584,445	-	argD	Sama_3011	0.41	-0.5
3,584,450	+	argD	Sama_3011	0.41	-1.9
3,584,450	+	argD	Sama_3011	0.41	-1.8
3,584,450	+	argD	Sama_3011	0.41	-0.5
3,584,451	-	argD	Sama_3011	0.41	+1.6
3,584,451	-	argD	Sama_3011	0.41	+0.8
3,584,451	-	argD	Sama_3011	0.41	-0.8
3,584,470	+	argD	Sama_3011	0.43	-1.2
3,584,566	-	argD	Sama_3011	0.51	+0.6
3,584,607	+	argD	Sama_3011	0.54	-0.6
3,584,607	+	argD	Sama_3011	0.54	-2.2
3,584,607	+	argD	Sama_3011	0.54	+0.6
3,584,607	+	argD	Sama_3011	0.54	+1.8
3,584,607	+	argD	Sama_3011	0.54	+0.2
3,584,607	+	argD	Sama_3011	0.54	+0.2
3,584,608	-	argD	Sama_3011	0.54	+1.9
3,584,665	-	argD	Sama_3011	0.59	+0.5
3,584,665	-	argD	Sama_3011	0.59	+1.9
3,584,665	-	argD	Sama_3011	0.59	+1.0
3,584,696	+	argD	Sama_3011	0.62	-0.1
3,584,734	-	argD	Sama_3011	0.65	-0.8