Strain Fitness in Shewanella amazonensis SB2B around Sama_2998

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,570,325	+		Sama_2996	0.90	-0.8
3,570,325	+		Sama_2996	0.90	-0.8
3,570,325	+		Sama_2996	0.90	-1.1
3,570,325	+		Sama_2996	0.90	-1.1
3,570,325	+		Sama_2996	0.90	+1.0
3,570,326	-		Sama_2996	0.90	+2.9
3,570,326	-		Sama_2996	0.90	+1.5
3,570,381	-				+2.3
3,570,381	-				+1.4
3,570,381	-				+1.3
3,570,381	-				+1.7
3,570,410	-				+3.2
3,570,414	+				+0.2
3,570,414	+				+0.8
3,570,415	-				+0.8
3,570,471	+				-0.6
3,570,471	+				-1.0
3,570,544	+				+0.3
3,570,544	+				-2.2
3,570,544	+				-0.5
3,570,544	+				-2.6
3,570,545	-				-0.0
3,570,545	-				-0.4
3,570,563	+				-2.9
3,570,564	-				+2.3
3,570,582	-				+1.6
3,570,593	+				+0.5
3,570,593	+				+0.1
3,570,593	+				-0.5
3,570,594	-				-1.5
3,570,594	-				-0.4
3,570,594	-				-2.6
3,570,594	-				-1.5
3,570,631	+		Sama_2997	0.12	-1.4
3,570,794	+		Sama_2997	0.49	-1.7
3,570,794	+		Sama_2997	0.49	+0.7
3,570,794	+		Sama_2997	0.49	+0.5
3,570,795	-		Sama_2997	0.49	+2.4
3,570,795	-		Sama_2997	0.49	+1.7
3,570,795	-		Sama_2997	0.49	+0.4
3,570,795	-		Sama_2997	0.49	-1.5
3,570,803	-		Sama_2997	0.51	-0.6
3,570,850	+		Sama_2997	0.61	+4.8
3,570,850	+		Sama_2997	0.61	-2.6
3,570,893	+		Sama_2997	0.71	-1.0
3,570,893	+		Sama_2997	0.71	+2.9
3,570,951	+		Sama_2997	0.84	-0.8
3,571,021	+				+1.2
3,571,021	+				-1.5
3,571,022	-				+2.0
3,571,022	-				-0.3
3,571,046	-				-1.0
3,571,046	-				+1.0
3,571,053	+				-0.5
3,571,053	+				+0.2
3,571,054	-				-2.0
3,571,054	-				+0.7
3,571,067	+				-1.8
3,571,067	+				+0.8
3,571,067	+				+1.6
3,571,067	+				-0.4
3,571,068	-				+1.5
3,571,068	-				+0.2
3,571,100	+				-0.5
3,571,122	-				+1.0
3,571,167	-				-0.0
3,571,167	-				-1.5
3,571,188	+				+0.0
3,571,188	+				-0.4
3,571,188	+				+0.7
3,571,189	-				+0.2
3,571,189	-				-0.5
3,571,189	-				+1.4
3,571,299	+				+1.7
3,571,313	+				-2.5
3,571,354	+		Sama_2998	0.11	-2.1
3,571,389	-		Sama_2998	0.13	-2.6
3,571,422	+		Sama_2998	0.15	-1.8
3,571,422	+		Sama_2998	0.15	-2.3
3,571,422	+		Sama_2998	0.15	-0.5
3,571,422	+		Sama_2998	0.15	-2.5
3,571,423	-		Sama_2998	0.15	-1.0
3,571,423	-		Sama_2998	0.15	+0.6
3,571,428	+		Sama_2998	0.16	-1.0
3,571,428	+		Sama_2998	0.16	-0.5
3,571,428	+		Sama_2998	0.16	-0.2
3,571,428	+		Sama_2998	0.16	-0.8
3,571,428	+		Sama_2998	0.16	+1.0
3,571,428	+		Sama_2998	0.16	-2.1
3,571,429	-		Sama_2998	0.16	+0.2
3,571,429	-		Sama_2998	0.16	-0.1
3,571,429	-		Sama_2998	0.16	-0.4
3,571,500	+		Sama_2998	0.20	-0.8
3,571,666	-		Sama_2998	0.30	+1.6
3,571,666	-		Sama_2998	0.30	-2.2
3,571,735	+		Sama_2998	0.34	+0.9
3,571,735	+		Sama_2998	0.34	-1.8
3,571,735	+		Sama_2998	0.34	+1.1
3,571,735	+		Sama_2998	0.34	+0.2
3,571,736	-		Sama_2998	0.34	-0.7
3,571,736	-		Sama_2998	0.34	-0.7
3,571,736	-		Sama_2998	0.34	+1.0
3,571,738	+		Sama_2998	0.34	-1.4
3,571,738	+		Sama_2998	0.34	-0.2
3,571,738	+		Sama_2998	0.34	+0.3
3,571,847	+		Sama_2998	0.40	+1.4
3,571,848	-		Sama_2998	0.40	+1.5
3,571,930	-		Sama_2998	0.45	-2.2
3,571,930	-		Sama_2998	0.45	+1.4
3,571,957	+		Sama_2998	0.47	+1.8
3,571,970	-		Sama_2998	0.48	-0.8
3,571,978	-		Sama_2998	0.48	+0.6
3,572,061	+		Sama_2998	0.53	-0.5
3,572,061	+		Sama_2998	0.53	-0.1
3,572,061	+		Sama_2998	0.53	-1.8
3,572,061	+		Sama_2998	0.53	-1.2
3,572,061	+		Sama_2998	0.53	+0.5
3,572,061	+		Sama_2998	0.53	+0.2
3,572,061	+		Sama_2998	0.53	-2.1
3,572,061	+		Sama_2998	0.53	-1.0
3,572,061	+		Sama_2998	0.53	-1.3
3,572,062	-		Sama_2998	0.53	-1.1
3,572,062	-		Sama_2998	0.53	+0.8
3,572,062	-		Sama_2998	0.53	-1.0
3,572,063	+		Sama_2998	0.53	-1.0
3,572,063	+		Sama_2998	0.53	-0.9
3,572,063	+		Sama_2998	0.53	-0.4
3,572,063	+		Sama_2998	0.53	-2.3
3,572,063	+		Sama_2998	0.53	+1.9
3,572,063	+		Sama_2998	0.53	+0.8
3,572,064	-		Sama_2998	0.53	-0.5
3,572,064	-		Sama_2998	0.53	-0.8
3,572,064	-		Sama_2998	0.53	+0.0
3,572,064	-		Sama_2998	0.53	+0.8
3,572,064	-		Sama_2998	0.53	-0.7
3,572,064	-		Sama_2998	0.53	-1.9
3,572,161	+		Sama_2998	0.59	+0.2
3,572,161	+		Sama_2998	0.59	+0.0
3,572,161	+		Sama_2998	0.59	-1.1
3,572,162	-		Sama_2998	0.59	+0.7
3,572,220	+		Sama_2998	0.62	+0.5
3,572,220	+		Sama_2998	0.62	-0.1
3,572,221	-		Sama_2998	0.62	-0.6
3,572,273	+		Sama_2998	0.65	+0.8
3,572,274	-		Sama_2998	0.66	+0.3
3,572,302	-		Sama_2998	0.67	-1.7
3,572,302	-		Sama_2998	0.67	-0.5
3,572,310	+		Sama_2998	0.68	+1.0
3,572,310	+		Sama_2998	0.68	-0.4
3,572,311	-		Sama_2998	0.68	-0.0
3,572,311	-		Sama_2998	0.68	-0.2
3,572,318	+		Sama_2998	0.68	+0.3
3,572,318	+		Sama_2998	0.68	-0.1
3,572,318	+		Sama_2998	0.68	-0.5
3,572,361	+		Sama_2998	0.71	-0.1
3,572,361	+		Sama_2998	0.71	-0.4
3,572,361	+		Sama_2998	0.71	-1.2
3,572,361	+		Sama_2998	0.71	-0.4
3,572,361	+		Sama_2998	0.71	-1.6
3,572,361	+		Sama_2998	0.71	-1.2
3,572,362	-		Sama_2998	0.71	-0.4
3,572,367	+		Sama_2998	0.71	-2.1
3,572,499	+		Sama_2998	0.79	+1.7
3,572,499	+		Sama_2998	0.79	+1.4
3,572,499	+		Sama_2998	0.79	+0.9
3,572,499	+		Sama_2998	0.79	+0.8
3,572,499	+		Sama_2998	0.79	-1.6
3,572,499	+		Sama_2998	0.79	-0.9
3,572,499	+		Sama_2998	0.79	+0.0
3,572,499	+		Sama_2998	0.79	-0.4
3,572,500	-		Sama_2998	0.79	-0.7
3,572,500	-		Sama_2998	0.79	-1.2
3,572,500	-		Sama_2998	0.79	-0.0
3,572,500	-		Sama_2998	0.79	-1.0
3,572,500	-		Sama_2998	0.79	-1.7
3,572,503	+		Sama_2998	0.79	+1.4
3,572,504	-		Sama_2998	0.79	+1.3
3,572,504	-		Sama_2998	0.79	-0.2
3,572,522	-		Sama_2998	0.80	+1.0
3,572,522	-		Sama_2998	0.80	-0.7
3,572,559	+		Sama_2998	0.82	-2.2
3,572,559	+		Sama_2998	0.82	-0.2
3,572,559	+		Sama_2998	0.82	-0.7
3,572,560	-		Sama_2998	0.82	-0.5
3,572,560	-		Sama_2998	0.82	-1.0
3,572,560	-		Sama_2998	0.82	+1.0
3,572,560	-		Sama_2998	0.82	-2.3
3,572,563	+		Sama_2998	0.83	-0.7
3,572,564	-		Sama_2998	0.83	-0.5
3,572,564	-		Sama_2998	0.83	+0.8
3,572,564	-		Sama_2998	0.83	-0.2
3,572,775	+				+1.2
3,572,776	-				-0.4
3,572,789	+				-2.2
3,572,789	+				-0.8
3,572,790	-				-0.9
3,572,834	+				-0.2
3,572,834	+				+1.7
3,572,834	+				-2.6
3,572,834	+				-0.8
3,572,835	-				+0.2
3,572,835	-				+0.8
3,572,835	-				+0.9
3,572,838	+				-1.9
3,572,839	-				+0.5
3,572,839	-				-2.1
3,572,839	-				-3.3
3,572,839	-				-0.7
3,572,839	-				-1.3
3,572,867	+				-0.1
3,572,867	+				-0.1
3,572,867	+				-0.9
3,572,868	-				-0.2
3,572,900	+				-1.0
3,572,900	+				-1.8
3,572,933	+		Sama_2999	0.13	-0.3
3,572,933	+		Sama_2999	0.13	-1.5
3,572,948	-		Sama_2999	0.16	+0.1
3,572,969	+		Sama_2999	0.20	-0.3
3,572,969	+		Sama_2999	0.20	+0.2
3,572,969	+		Sama_2999	0.20	-1.0
3,572,969	+		Sama_2999	0.20	-0.6
3,572,969	+		Sama_2999	0.20	+2.5
3,572,970	-		Sama_2999	0.20	-3.0
3,572,970	-		Sama_2999	0.20	-0.0
3,572,970	-		Sama_2999	0.20	-1.9
3,572,970	-		Sama_2999	0.20	+1.4
3,572,970	-		Sama_2999	0.20	+1.3
3,572,970	-		Sama_2999	0.20	-0.2
3,572,970	-		Sama_2999	0.20	+0.3
3,573,079	+		Sama_2999	0.42	-0.8
3,573,156	+		Sama_2999	0.57	+2.8
3,573,274	-		Sama_2999	0.80	-3.1
3,573,274	-		Sama_2999	0.80	+0.4
3,573,274	-		Sama_2999	0.80	-0.3
3,573,308	+		Sama_2999	0.86	-0.4
3,573,309	-		Sama_2999	0.86	-1.6
3,573,372	+				-0.2
3,573,372	+				+0.1
3,573,373	-				-0.8
3,573,373	-				-0.1
3,573,373	-				-1.9
3,573,443	+				-0.4
3,573,443	+				-0.2
3,573,444	-				+0.8
3,573,444	-				+1.8
3,573,498	+				-3.3
3,573,498	+				+0.0
3,573,498	+				-2.5
3,573,498	+				-1.0
3,573,498	+				-2.4
3,573,499	-				-1.4
3,573,499	-				-2.1
3,573,499	-				-0.5
3,573,500	+				+1.7
3,573,500	+				+1.8
3,573,500	+				-0.5
3,573,501	-				+1.7
3,573,501	-				-1.2
3,573,501	-				+0.5
3,573,501	-				-0.8
3,573,513	+				-2.5
3,573,519	+				-0.1
3,573,519	+				+0.2
3,573,520	-				-1.4
3,573,598	+				+0.1
3,573,598	+				-0.3
3,573,598	+				-0.3
3,573,598	+				-1.9
3,573,598	+				+1.4
3,573,598	+				-0.8
3,573,598	+				+0.2
3,573,599	-				-2.9
3,573,599	-				+0.2
3,573,599	-				+1.4
3,573,599	-				+0.6
3,573,599	-				-0.3
3,573,599	-				+1.2
3,573,599	-				-0.9
3,573,599	-				-1.2
3,573,599	-				-1.8
3,573,599	-				+0.2
3,573,784	+		Sama_3000	0.24	-2.9
3,573,784	+		Sama_3000	0.24	-1.9
3,573,784	+		Sama_3000	0.24	+1.3
3,573,784	+		Sama_3000	0.24	+1.0
3,573,784	+		Sama_3000	0.24	+1.1
3,573,784	+		Sama_3000	0.24	-3.0
3,573,784	+		Sama_3000	0.24	-0.2
3,573,784	+		Sama_3000	0.24	+3.2
3,573,785	-		Sama_3000	0.24	-1.1
3,573,785	-		Sama_3000	0.24	+2.5
3,573,785	-		Sama_3000	0.24	-1.3
3,573,785	-		Sama_3000	0.24	+1.1
3,573,785	-		Sama_3000	0.24	-1.5
3,573,785	-		Sama_3000	0.24	+1.0
3,573,785	-		Sama_3000	0.24	+2.3
3,573,785	-		Sama_3000	0.24	+3.0
3,573,852	-		Sama_3000	0.31	-1.9