Strain Fitness in Shewanella amazonensis SB2B around Sama_2986

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,556,551	+	napG	Sama_2984	0.89	+0.5
3,556,552	-	napG	Sama_2984	0.89	-1.6
3,556,573	+				+2.6
3,556,573	+				-1.0
3,556,573	+				-2.3
3,556,574	-				-0.3
3,556,585	+				+0.8
3,556,625	+				-0.3
3,556,625	+				-1.0
3,556,625	+				+2.3
3,556,625	+				-0.6
3,556,626	-				-0.6
3,556,642	+				+1.5
3,556,642	+				-0.8
3,556,642	+				+0.3
3,556,643	-				+1.0
3,556,643	-				+0.4
3,556,643	-				-0.6
3,556,643	-				+0.5
3,556,992	+	napH	Sama_2985	0.40	-1.4
3,556,992	+	napH	Sama_2985	0.40	-0.8
3,556,993	-	napH	Sama_2985	0.40	-0.2
3,556,993	-	napH	Sama_2985	0.40	-0.3
3,557,049	+	napH	Sama_2985	0.46	-0.3
3,557,050	-	napH	Sama_2985	0.46	+1.6
3,557,054	+	napH	Sama_2985	0.47	-2.9
3,557,054	+	napH	Sama_2985	0.47	-0.7
3,557,054	+	napH	Sama_2985	0.47	+0.6
3,557,054	+	napH	Sama_2985	0.47	+3.2
3,557,054	+	napH	Sama_2985	0.47	-0.7
3,557,054	+	napH	Sama_2985	0.47	-1.9
3,557,055	-	napH	Sama_2985	0.47	-3.1
3,557,055	-	napH	Sama_2985	0.47	+1.4
3,557,206	+	napH	Sama_2985	0.64	-1.8
3,557,207	-	napH	Sama_2985	0.64	-0.0
3,557,207	-	napH	Sama_2985	0.64	+0.3
3,557,207	-	napH	Sama_2985	0.64	+1.2
3,557,272	+	napH	Sama_2985	0.71	+0.8
3,557,272	+	napH	Sama_2985	0.71	-1.0
3,557,272	+	napH	Sama_2985	0.71	+1.4
3,557,272	+	napH	Sama_2985	0.71	-1.6
3,557,273	-	napH	Sama_2985	0.71	+1.4
3,557,273	-	napH	Sama_2985	0.71	-1.4
3,557,393	+	napH	Sama_2985	0.84	-1.9
3,557,393	+	napH	Sama_2985	0.84	-0.4
3,557,394	-	napH	Sama_2985	0.84	-0.5
3,557,394	-	napH	Sama_2985	0.84	+1.1
3,557,394	-	napH	Sama_2985	0.84	+1.8
3,557,394	-	napH	Sama_2985	0.84	-0.2
3,557,427	-	napH	Sama_2985	0.88	+1.0
3,557,449	+				+2.6
3,557,450	-				-0.1
3,557,450	-				-0.7
3,557,450	-				-2.3
3,557,458	-				+0.9
3,557,471	+				-1.8
3,557,471	+				-1.4
3,557,471	+				-0.8
3,557,472	-				-0.1
3,557,472	-				+0.3
3,557,483	+				-1.5
3,557,544	+				-0.8
3,557,545	-				+1.0
3,557,545	-				-1.9
3,557,553	+				+1.0
3,557,553	+				+0.5
3,557,553	+				-1.1
3,557,553	+				-2.1
3,557,553	+				-1.8
3,557,554	-				-1.5
3,557,687	+		Sama_2986	0.35	-0.2
3,557,688	-		Sama_2986	0.36	-0.8
3,557,716	+		Sama_2986	0.42	+1.4
3,557,716	+		Sama_2986	0.42	+1.0
3,557,716	+		Sama_2986	0.42	-0.7
3,557,717	-		Sama_2986	0.42	+2.4
3,557,717	-		Sama_2986	0.42	+1.1
3,557,720	+		Sama_2986	0.43	-1.2
3,557,720	+		Sama_2986	0.43	+0.1
3,557,720	+		Sama_2986	0.43	-0.2
3,557,720	+		Sama_2986	0.43	-1.7
3,557,720	+		Sama_2986	0.43	-0.5
3,557,721	-		Sama_2986	0.43	+3.2
3,557,721	-		Sama_2986	0.43	+3.4
3,557,721	-		Sama_2986	0.43	-1.7
3,557,721	-		Sama_2986	0.43	+1.6
3,557,721	-		Sama_2986	0.43	+0.0
3,557,721	-		Sama_2986	0.43	-0.1
3,557,741	-		Sama_2986	0.48	-0.1
3,557,741	-		Sama_2986	0.48	-1.5
3,557,741	-		Sama_2986	0.48	-0.1
3,557,759	+		Sama_2986	0.52	+0.8
3,557,760	-		Sama_2986	0.52	-1.1
3,557,760	-		Sama_2986	0.52	+0.3
3,557,772	+		Sama_2986	0.55	-1.8
3,557,772	+		Sama_2986	0.55	-0.3
3,557,772	+		Sama_2986	0.55	-1.9
3,557,773	-		Sama_2986	0.55	-0.2
3,557,773	-		Sama_2986	0.55	-0.3
3,557,777	-		Sama_2986	0.56	-1.1
3,557,888	+		Sama_2986	0.82	-0.2
3,557,888	+		Sama_2986	0.82	+0.7
3,557,888	+		Sama_2986	0.82	+0.0
3,557,888	+		Sama_2986	0.82	+1.4
3,557,888	+		Sama_2986	0.82	+2.0
3,557,888	+		Sama_2986	0.82	+0.9
3,557,889	-		Sama_2986	0.82	-0.2
3,557,889	-		Sama_2986	0.82	-0.7
3,557,889	-		Sama_2986	0.82	-2.5
3,557,889	-		Sama_2986	0.82	-2.1
3,557,963	+				+1.0
3,557,964	-				-0.5
3,557,964	-				-0.4
3,558,017	+				-0.8
3,558,017	+				+0.4
3,558,018	-				-0.5
3,558,033	-				+1.4
3,558,033	-				+0.5
3,558,094	-				+3.1
3,558,121	+				-1.2
3,558,122	-				-2.0
3,558,122	-				-0.5
3,558,122	-				-0.1
3,558,139	-		Sama_2987	0.11	+1.8
3,558,248	+		Sama_2987	0.23	-1.8
3,558,248	+		Sama_2987	0.23	-0.4
3,558,248	+		Sama_2987	0.23	-1.0
3,558,248	+		Sama_2987	0.23	-2.2
3,558,249	-		Sama_2987	0.23	+0.5
3,558,291	+		Sama_2987	0.28	+3.2
3,558,292	-		Sama_2987	0.28	+0.0
3,558,292	-		Sama_2987	0.28	-0.2
3,558,292	-		Sama_2987	0.28	-1.0
3,558,326	+		Sama_2987	0.32	+1.4
3,558,327	-		Sama_2987	0.32	+0.2
3,558,552	+		Sama_2987	0.57	-0.5
3,558,552	+		Sama_2987	0.57	-2.4
3,558,553	-		Sama_2987	0.57	-0.5
3,558,553	-		Sama_2987	0.57	+0.8
3,558,570	-		Sama_2987	0.59	-2.0
3,558,611	+		Sama_2987	0.63	-0.6
3,558,611	+		Sama_2987	0.63	+0.9
3,558,611	+		Sama_2987	0.63	-0.8
3,558,739	-		Sama_2987	0.78	+1.2
3,558,739	-		Sama_2987	0.78	+1.6
3,558,809	+		Sama_2987	0.85	+0.6
3,558,809	+		Sama_2987	0.85	-0.0
3,558,809	+		Sama_2987	0.85	-0.7
3,558,810	-		Sama_2987	0.85	+0.5
3,558,810	-		Sama_2987	0.85	-0.6
3,558,842	+		Sama_2987	0.89	+1.8
3,558,843	-		Sama_2987	0.89	-0.3
3,558,859	+				-1.3
3,558,859	+				+1.4
3,558,859	+				-1.4
3,558,860	-				-1.4
3,558,860	-				-0.0
3,558,920	+				-0.2
3,558,930	+				-2.3
3,558,930	+				+0.4
3,558,930	+				-1.1
3,558,931	-				-0.9