Strain Fitness in Shewanella amazonensis SB2B around Sama_2977

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,546,409	+		Sama_2976	0.22	+0.1
3,546,409	+		Sama_2976	0.22	+0.0
3,546,409	+		Sama_2976	0.22	-1.7
3,546,410	-		Sama_2976	0.22	-1.0
3,546,410	-		Sama_2976	0.22	-1.5
3,546,410	-		Sama_2976	0.22	-1.4
3,546,410	-		Sama_2976	0.22	+0.8
3,546,410	-		Sama_2976	0.22	-1.2
3,546,492	-		Sama_2976	0.29	-0.2
3,546,492	-		Sama_2976	0.29	+0.3
3,546,512	+		Sama_2976	0.31	-1.1
3,546,513	-		Sama_2976	0.31	+1.2
3,546,530	+		Sama_2976	0.32	+0.5
3,546,530	+		Sama_2976	0.32	+1.8
3,546,530	+		Sama_2976	0.32	+1.3
3,546,531	-		Sama_2976	0.32	+0.7
3,546,531	-		Sama_2976	0.32	-1.5
3,546,587	+		Sama_2976	0.37	+1.2
3,546,587	+		Sama_2976	0.37	+0.4
3,546,587	+		Sama_2976	0.37	+1.4
3,546,588	-		Sama_2976	0.37	+0.9
3,546,610	-		Sama_2976	0.39	-0.9
3,546,614	+		Sama_2976	0.39	-0.8
3,546,614	+		Sama_2976	0.39	-1.4
3,546,614	+		Sama_2976	0.39	-1.9
3,546,614	+		Sama_2976	0.39	-0.3
3,546,614	+		Sama_2976	0.39	-1.2
3,546,615	-		Sama_2976	0.39	-1.9
3,546,615	-		Sama_2976	0.39	+0.7
3,546,615	-		Sama_2976	0.39	-0.5
3,546,622	+		Sama_2976	0.40	+0.7
3,546,622	+		Sama_2976	0.40	-1.0
3,546,622	+		Sama_2976	0.40	-0.3
3,546,622	+		Sama_2976	0.40	-1.7
3,546,622	+		Sama_2976	0.40	+0.4
3,546,623	-		Sama_2976	0.40	+0.1
3,546,623	-		Sama_2976	0.40	-1.9
3,546,623	-		Sama_2976	0.40	+1.8
3,546,623	-		Sama_2976	0.40	-0.3
3,546,623	-		Sama_2976	0.40	+0.1
3,546,623	-		Sama_2976	0.40	+0.8
3,546,623	-		Sama_2976	0.40	-2.3
3,546,665	+		Sama_2976	0.43	+0.4
3,546,671	+		Sama_2976	0.44	-0.6
3,546,671	+		Sama_2976	0.44	-1.8
3,546,671	+		Sama_2976	0.44	-0.3
3,546,672	-		Sama_2976	0.44	-1.9
3,546,672	-		Sama_2976	0.44	+0.5
3,546,672	-		Sama_2976	0.44	-1.0
3,546,672	-		Sama_2976	0.44	-2.5
3,546,689	+		Sama_2976	0.45	-0.9
3,546,690	-		Sama_2976	0.45	-0.6
3,546,710	-		Sama_2976	0.47	+2.0
3,546,713	+		Sama_2976	0.47	-2.1
3,546,714	-		Sama_2976	0.47	-0.1
3,546,714	-		Sama_2976	0.47	-0.6
3,546,714	-		Sama_2976	0.47	-0.8
3,546,724	-		Sama_2976	0.48	+0.5
3,546,809	+		Sama_2976	0.55	+0.2
3,546,810	-		Sama_2976	0.55	+0.4
3,546,810	-		Sama_2976	0.55	+1.3
3,546,823	+		Sama_2976	0.56	+1.3
3,546,823	+		Sama_2976	0.56	-1.0
3,546,824	-		Sama_2976	0.56	+0.1
3,546,824	-		Sama_2976	0.56	-2.2
3,546,824	-		Sama_2976	0.56	+1.1
3,546,828	+		Sama_2976	0.57	-1.2
3,546,828	+		Sama_2976	0.57	+1.5
3,546,828	+		Sama_2976	0.57	-2.4
3,546,828	+		Sama_2976	0.57	-1.4
3,546,829	-		Sama_2976	0.57	-1.8
3,546,829	-		Sama_2976	0.57	+0.5
3,546,859	+		Sama_2976	0.59	+1.8
3,546,859	+		Sama_2976	0.59	+0.4
3,546,859	+		Sama_2976	0.59	-0.1
3,546,922	+		Sama_2976	0.64	-2.2
3,546,922	+		Sama_2976	0.64	-2.7
3,546,922	+		Sama_2976	0.64	-0.7
3,546,922	+		Sama_2976	0.64	+0.2
3,546,922	+		Sama_2976	0.64	-2.0
3,546,922	+		Sama_2976	0.64	-1.0
3,546,923	-		Sama_2976	0.64	-1.7
3,546,923	-		Sama_2976	0.64	+1.9
3,546,923	-		Sama_2976	0.64	+1.4
3,546,923	-		Sama_2976	0.64	+1.8
3,547,067	+		Sama_2976	0.76	+1.4
3,547,067	+		Sama_2976	0.76	+1.1
3,547,068	-		Sama_2976	0.76	-0.5
3,547,068	-		Sama_2976	0.76	+0.2
3,547,068	-		Sama_2976	0.76	-0.3
3,547,170	-		Sama_2976	0.85	-0.8
3,547,227	-		Sama_2976	0.89	-1.8
3,547,232	+		Sama_2976	0.90	-1.2
3,547,233	-		Sama_2976	0.90	-2.5
3,547,277	+				+1.8
3,547,331	+				+1.7
3,547,331	+				+2.1
3,547,332	-				-0.4
3,547,332	-				+1.4
3,547,332	-				-0.6
3,547,332	-				-3.0
3,547,332	-				-0.1
3,547,332	-				-0.0
3,547,332	-				+0.9
3,547,381	-				-1.6
3,547,395	+				-1.0
3,547,395	+				+1.5
3,547,395	+				+0.1
3,547,396	-				+0.8
3,547,396	-				-0.8
3,547,396	-				+0.4
3,547,434	+		Sama_2977	0.11	-2.1
3,547,435	-		Sama_2977	0.11	+2.2
3,547,563	+		Sama_2977	0.32	+0.1
3,547,563	+		Sama_2977	0.32	-2.4
3,547,563	+		Sama_2977	0.32	+1.1
3,547,563	+		Sama_2977	0.32	-0.3
3,547,564	-		Sama_2977	0.32	-0.2
3,547,564	-		Sama_2977	0.32	-0.6
3,547,564	-		Sama_2977	0.32	+0.1
3,547,564	-		Sama_2977	0.32	-0.3
3,547,564	-		Sama_2977	0.32	-1.2
3,547,565	+		Sama_2977	0.32	-2.6
3,547,566	-		Sama_2977	0.32	-1.4
3,547,566	-		Sama_2977	0.32	-0.4
3,547,581	+		Sama_2977	0.35	-0.4
3,547,611	+		Sama_2977	0.40	+1.0
3,547,611	+		Sama_2977	0.40	-2.8
3,547,611	+		Sama_2977	0.40	+1.9
3,547,650	-		Sama_2977	0.46	-1.1
3,547,662	+		Sama_2977	0.48	+1.6
3,547,663	-		Sama_2977	0.48	-0.2
3,547,716	+		Sama_2977	0.57	+1.4
3,547,736	+		Sama_2977	0.60	-2.1
3,547,785	+		Sama_2977	0.68	+0.0
3,547,785	+		Sama_2977	0.68	-2.8
3,547,790	-		Sama_2977	0.69	+2.2
3,547,800	-		Sama_2977	0.71	-1.0
3,547,800	-		Sama_2977	0.71	-0.8
3,547,869	+		Sama_2977	0.82	-1.9
3,547,869	+		Sama_2977	0.82	-0.6
3,547,869	+		Sama_2977	0.82	-0.2
3,547,870	-		Sama_2977	0.82	+0.8
3,547,870	-		Sama_2977	0.82	+1.8
3,547,870	-		Sama_2977	0.82	-1.7
3,547,870	-		Sama_2977	0.82	-0.8
3,547,870	-		Sama_2977	0.82	-1.2
3,547,870	-		Sama_2977	0.82	+0.3
3,547,870	-		Sama_2977	0.82	-0.7
3,547,899	+		Sama_2977	0.87	-0.2
3,547,899	+		Sama_2977	0.87	+1.9
3,547,899	+		Sama_2977	0.87	-0.7
3,547,899	+		Sama_2977	0.87	+2.1
3,547,899	+		Sama_2977	0.87	-0.1
3,547,900	-		Sama_2977	0.87	-0.1
3,547,900	-		Sama_2977	0.87	-0.8
3,547,900	-		Sama_2977	0.87	-0.5
3,547,900	-		Sama_2977	0.87	+3.1
3,547,900	-		Sama_2977	0.87	+1.4
3,547,900	-		Sama_2977	0.87	+0.2
3,547,900	-		Sama_2977	0.87	-0.8
3,547,900	-		Sama_2977	0.87	+0.0
3,547,900	-		Sama_2977	0.87	-1.0
3,547,900	-		Sama_2977	0.87	-0.7
3,547,900	-		Sama_2977	0.87	+0.2
3,547,938	+				+1.1
3,547,938	+				-1.6
3,547,939	-				+1.1
3,547,962	+				-0.1
3,547,962	+				+0.4
3,547,962	+				+0.3
3,547,962	+				-0.8
3,547,962	+				-1.9
3,547,963	-				-0.6
3,547,963	-				-1.4
3,547,963	-				+0.0
3,547,967	+				+1.1
3,547,967	+				+1.2
3,547,968	-				-1.7
3,547,968	-				-1.7
3,547,968	-				-1.2
3,547,968	-				+0.6
3,547,968	-				+1.4
3,547,983	+				-0.7
3,547,983	+				-0.6
3,548,015	+				-2.1
3,548,015	+				+1.2
3,548,015	+				-1.2
3,548,015	+				+0.6
3,548,015	+				-1.0
3,548,015	+				+0.7
3,548,015	+				+0.2
3,548,015	+				-0.4
3,548,015	+				-0.4
3,548,016	-				+0.4
3,548,016	-				-1.4
3,548,016	-				-2.2
3,548,016	-				+1.6
3,548,016	-				-0.6
3,548,016	-				-0.9
3,548,016	-				-0.9
3,548,020	+				+0.3
3,548,021	-				+1.4
3,548,032	+				+1.6
3,548,091	+		Sama_2978	0.16	+0.4
3,548,092	-		Sama_2978	0.17	-0.9
3,548,092	-		Sama_2978	0.17	+1.3
3,548,092	-		Sama_2978	0.17	-1.6
3,548,092	-		Sama_2978	0.17	-0.2
3,548,185	+		Sama_2978	0.31	-2.2
3,548,185	+		Sama_2978	0.31	-0.2
3,548,185	+		Sama_2978	0.31	+0.7
3,548,185	+		Sama_2978	0.31	-1.0
3,548,185	+		Sama_2978	0.31	+2.4
3,548,186	-		Sama_2978	0.32	+0.4
3,548,186	-		Sama_2978	0.32	-1.2
3,548,278	+		Sama_2978	0.46	-1.6
3,548,278	+		Sama_2978	0.46	-1.0
3,548,278	+		Sama_2978	0.46	-0.7
3,548,278	+		Sama_2978	0.46	-1.0
3,548,278	+		Sama_2978	0.46	+0.4
3,548,278	+		Sama_2978	0.46	+1.8
3,548,278	+		Sama_2978	0.46	+0.1
3,548,279	-		Sama_2978	0.46	+0.5
3,548,279	-		Sama_2978	0.46	-0.2
3,548,279	-		Sama_2978	0.46	-0.6
3,548,324	+		Sama_2978	0.54	-1.9
3,548,325	-		Sama_2978	0.54	-1.9
3,548,353	+		Sama_2978	0.58	+0.9
3,548,354	-		Sama_2978	0.58	+0.2
3,548,419	+		Sama_2978	0.69	-2.9
3,548,419	+		Sama_2978	0.69	-2.8
3,548,420	-		Sama_2978	0.69	+1.9
3,548,440	+		Sama_2978	0.72	+1.3
3,548,441	-		Sama_2978	0.72	+0.8
3,548,509	+		Sama_2978	0.83	+1.5
3,548,509	+		Sama_2978	0.83	-1.6
3,548,510	-		Sama_2978	0.83	-1.8
3,548,510	-		Sama_2978	0.83	-3.9
3,548,510	-		Sama_2978	0.83	-2.0
3,548,600	+				-1.4
3,548,600	+				+1.4
3,548,603	+				-0.0
3,548,603	+				+0.6
3,548,603	+				+1.4
3,548,603	+				-0.2
3,548,604	-				-1.8
3,548,604	-				+0.5
3,548,850	-		Sama_2979	0.31	+0.2
3,548,850	-		Sama_2979	0.31	+1.7
3,548,884	+		Sama_2979	0.35	-1.9
3,548,938	+		Sama_2979	0.42	+0.3
3,548,942	+		Sama_2979	0.43	-1.1
3,548,942	+		Sama_2979	0.43	+0.9
3,548,943	-		Sama_2979	0.43	-1.1
3,548,965	+		Sama_2979	0.46	+0.5