Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2929 and Sama_2930 are separated by 19 nucleotides Sama_2930 and Sama_2931 are separated by 0 nucleotides Sama_2931 and Sama_2932 are separated by 242 nucleotides
Sama_2929: Sama_2929 - hypothetical protein (RefSeq), at 3,483,023 to 3,483,838
_2929
Sama_2930: Sama_2930 - hypothetical protein (RefSeq), at 3,483,858 to 3,484,598
_2930
Sama_2931: Sama_2931 - hypothetical protein (RefSeq), at 3,484,599 to 3,484,961
_2931
Sama_2932: Sama_2932 - dihydropteridine reductase (RefSeq), at 3,485,204 to 3,485,857
_2932
Position (kb)
3484
3485 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.636 kb on + strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.637 kb on - strand, within Sama_2929 at 3483.640 kb on + strand, within Sama_2929 at 3483.641 kb on - strand, within Sama_2929 at 3483.641 kb on - strand, within Sama_2929 at 3483.649 kb on + strand, within Sama_2929 at 3483.649 kb on + strand, within Sama_2929 at 3483.650 kb on - strand, within Sama_2929 at 3483.819 kb on - strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.826 kb on + strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.827 kb on - strand at 3483.841 kb on + strand at 3483.907 kb on + strand at 3483.908 kb on - strand at 3483.908 kb on - strand at 3483.908 kb on - strand at 3483.908 kb on - strand at 3483.910 kb on + strand at 3483.910 kb on + strand at 3483.910 kb on + strand at 3483.979 kb on + strand, within Sama_2930 at 3484.071 kb on - strand, within Sama_2930 at 3484.071 kb on - strand, within Sama_2930 at 3484.116 kb on - strand, within Sama_2930 at 3484.123 kb on + strand, within Sama_2930 at 3484.123 kb on + strand, within Sama_2930 at 3484.123 kb on + strand, within Sama_2930 at 3484.124 kb on - strand, within Sama_2930 at 3484.124 kb on - strand, within Sama_2930 at 3484.222 kb on + strand, within Sama_2930 at 3484.222 kb on + strand, within Sama_2930 at 3484.223 kb on - strand, within Sama_2930 at 3484.223 kb on - strand, within Sama_2930 at 3484.246 kb on + strand, within Sama_2930 at 3484.246 kb on + strand, within Sama_2930 at 3484.246 kb on + strand, within Sama_2930 at 3484.246 kb on + strand, within Sama_2930 at 3484.246 kb on + strand, within Sama_2930 at 3484.247 kb on - strand, within Sama_2930 at 3484.247 kb on - strand, within Sama_2930 at 3484.275 kb on - strand, within Sama_2930 at 3484.283 kb on - strand, within Sama_2930 at 3484.285 kb on + strand, within Sama_2930 at 3484.285 kb on + strand, within Sama_2930 at 3484.409 kb on - strand, within Sama_2930 at 3484.409 kb on - strand, within Sama_2930 at 3484.409 kb on - strand, within Sama_2930 at 3484.436 kb on - strand, within Sama_2930 at 3484.436 kb on - strand, within Sama_2930 at 3484.436 kb on - strand, within Sama_2930 at 3484.547 kb on + strand at 3484.547 kb on + strand at 3484.555 kb on + strand at 3484.556 kb on - strand at 3484.568 kb on + strand at 3484.569 kb on - strand at 3484.590 kb on + strand at 3484.590 kb on + strand at 3484.590 kb on + strand at 3484.590 kb on + strand at 3484.591 kb on - strand at 3484.591 kb on - strand at 3484.600 kb on + strand at 3484.600 kb on + strand at 3484.600 kb on + strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.601 kb on - strand at 3484.627 kb on + strand at 3484.628 kb on - strand at 3484.628 kb on - strand at 3484.721 kb on + strand, within Sama_2931 at 3484.750 kb on + strand, within Sama_2931 at 3484.750 kb on + strand, within Sama_2931 at 3484.762 kb on + strand, within Sama_2931 at 3484.811 kb on + strand, within Sama_2931 at 3484.857 kb on + strand, within Sama_2931 at 3484.858 kb on - strand, within Sama_2931 at 3484.858 kb on - strand, within Sama_2931 at 3484.862 kb on + strand, within Sama_2931 at 3484.862 kb on + strand, within Sama_2931 at 3484.863 kb on - strand, within Sama_2931 at 3484.863 kb on - strand, within Sama_2931 at 3484.910 kb on + strand, within Sama_2931 at 3484.910 kb on + strand, within Sama_2931 at 3484.911 kb on - strand, within Sama_2931 at 3484.911 kb on - strand, within Sama_2931 at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.961 kb on + strand at 3484.962 kb on - strand at 3484.962 kb on - strand at 3484.962 kb on - strand at 3484.962 kb on - strand at 3484.962 kb on - strand at 3484.962 kb on - strand at 3485.061 kb on + strand at 3485.064 kb on - strand at 3485.064 kb on - strand at 3485.065 kb on + strand at 3485.066 kb on - strand at 3485.120 kb on - strand at 3485.160 kb on + strand at 3485.160 kb on + strand at 3485.160 kb on + strand at 3485.161 kb on - strand at 3485.161 kb on - strand at 3485.161 kb on - strand at 3485.161 kb on - strand at 3485.161 kb on - strand at 3485.458 kb on + strand, within Sama_2932 at 3485.458 kb on + strand, within Sama_2932 at 3485.458 kb on + strand, within Sama_2932 at 3485.458 kb on + strand, within Sama_2932 at 3485.458 kb on + strand, within Sama_2932 at 3485.459 kb on - strand, within Sama_2932 at 3485.459 kb on - strand, within Sama_2932 at 3485.459 kb on - strand, within Sama_2932 at 3485.459 kb on - strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.557 kb on + strand, within Sama_2932 at 3485.558 kb on - strand, within Sama_2932 at 3485.581 kb on + strand, within Sama_2932 at 3485.581 kb on + strand, within Sama_2932 at 3485.581 kb on + strand, within Sama_2932 at 3485.582 kb on - strand, within Sama_2932 at 3485.582 kb on - strand, within Sama_2932 at 3485.582 kb on - strand, within Sama_2932 at 3485.582 kb on - strand, within Sama_2932 at 3485.582 kb on - strand, within Sama_2932 at 3485.592 kb on - strand, within Sama_2932 at 3485.592 kb on - strand, within Sama_2932 at 3485.592 kb on - strand, within Sama_2932 at 3485.592 kb on - strand, within Sama_2932 at 3485.633 kb on + strand, within Sama_2932 at 3485.633 kb on + strand, within Sama_2932 at 3485.633 kb on + strand, within Sama_2932 at 3485.633 kb on + strand, within Sama_2932 at 3485.634 kb on - strand, within Sama_2932 at 3485.634 kb on - strand, within Sama_2932 at 3485.634 kb on - strand, within Sama_2932 at 3485.634 kb on - strand, within Sama_2932 at 3485.888 kb on + strand at 3485.923 kb on - strand at 3485.923 kb on - strand at 3485.923 kb on - strand at 3485.926 kb on + strand at 3485.960 kb on + strand at 3485.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Motility assay, center cut sample 2 remove 3,483,636 + Sama_2929 0.75 -1.3 3,483,636 + Sama_2929 0.75 -0.6 3,483,636 + Sama_2929 0.75 -0.1 3,483,636 + Sama_2929 0.75 -1.4 3,483,636 + Sama_2929 0.75 +2.0 3,483,636 + Sama_2929 0.75 +0.8 3,483,636 + Sama_2929 0.75 +1.3 3,483,636 + Sama_2929 0.75 -1.7 3,483,636 + Sama_2929 0.75 -2.1 3,483,637 - Sama_2929 0.75 -1.4 3,483,637 - Sama_2929 0.75 -0.6 3,483,637 - Sama_2929 0.75 -0.1 3,483,637 - Sama_2929 0.75 -0.3 3,483,637 - Sama_2929 0.75 -2.0 3,483,637 - Sama_2929 0.75 -1.4 3,483,637 - Sama_2929 0.75 -2.2 3,483,637 - Sama_2929 0.75 -1.7 3,483,637 - Sama_2929 0.75 -1.0 3,483,637 - Sama_2929 0.75 -0.6 3,483,637 - Sama_2929 0.75 -1.7 3,483,637 - Sama_2929 0.75 -0.5 3,483,637 - Sama_2929 0.75 -2.7 3,483,637 - Sama_2929 0.75 +1.3 3,483,637 - Sama_2929 0.75 -0.3 3,483,637 - Sama_2929 0.75 -1.0 3,483,637 - Sama_2929 0.75 +0.1 3,483,637 - Sama_2929 0.75 -1.1 3,483,637 - Sama_2929 0.75 +2.0 3,483,637 - Sama_2929 0.75 +0.8 3,483,637 - Sama_2929 0.75 -0.6 3,483,637 - Sama_2929 0.75 -2.4 3,483,640 + Sama_2929 0.76 -0.9 3,483,641 - Sama_2929 0.76 -1.2 3,483,641 - Sama_2929 0.76 -1.6 3,483,649 + Sama_2929 0.77 -0.2 3,483,649 + Sama_2929 0.77 -0.8 3,483,650 - Sama_2929 0.77 -1.2 3,483,819 - +0.2 3,483,826 + -1.1 3,483,826 + +1.8 3,483,826 + -0.4 3,483,826 + -1.1 3,483,826 + -0.3 3,483,826 + -1.6 3,483,826 + +0.4 3,483,826 + -1.0 3,483,826 + +0.2 3,483,827 - +1.4 3,483,827 - -0.3 3,483,827 - -0.9 3,483,827 - -1.7 3,483,827 - -2.7 3,483,827 - -1.1 3,483,827 - +0.6 3,483,827 - +0.7 3,483,827 - -2.0 3,483,827 - +0.4 3,483,841 + +0.8 3,483,907 + -1.1 3,483,908 - +1.7 3,483,908 - -1.8 3,483,908 - -0.3 3,483,908 - -0.5 3,483,910 + -2.9 3,483,910 + -1.3 3,483,910 + +0.8 3,483,979 + Sama_2930 0.16 +1.9 3,484,071 - Sama_2930 0.29 -2.6 3,484,071 - Sama_2930 0.29 -1.3 3,484,116 - Sama_2930 0.35 -0.7 3,484,123 + Sama_2930 0.36 -0.8 3,484,123 + Sama_2930 0.36 +0.2 3,484,123 + Sama_2930 0.36 -0.6 3,484,124 - Sama_2930 0.36 -1.1 3,484,124 - Sama_2930 0.36 +0.3 3,484,222 + Sama_2930 0.49 +0.4 3,484,222 + Sama_2930 0.49 -1.6 3,484,223 - Sama_2930 0.49 -1.5 3,484,223 - Sama_2930 0.49 +1.5 3,484,246 + Sama_2930 0.52 -0.3 3,484,246 + Sama_2930 0.52 +0.2 3,484,246 + Sama_2930 0.52 +0.5 3,484,246 + Sama_2930 0.52 -0.9 3,484,246 + Sama_2930 0.52 +0.6 3,484,247 - Sama_2930 0.52 +0.7 3,484,247 - Sama_2930 0.52 -1.6 3,484,275 - Sama_2930 0.56 -0.6 3,484,283 - Sama_2930 0.57 -0.4 3,484,285 + Sama_2930 0.58 -1.1 3,484,285 + Sama_2930 0.58 -0.3 3,484,409 - Sama_2930 0.74 -0.8 3,484,409 - Sama_2930 0.74 -0.4 3,484,409 - Sama_2930 0.74 -0.7 3,484,436 - Sama_2930 0.78 -0.5 3,484,436 - Sama_2930 0.78 +0.4 3,484,436 - Sama_2930 0.78 -0.5 3,484,547 + -1.3 3,484,547 + -1.6 3,484,555 + -0.4 3,484,556 - +1.2 3,484,568 + +1.7 3,484,569 - +0.5 3,484,590 + -0.2 3,484,590 + -0.1 3,484,590 + -0.8 3,484,590 + -2.3 3,484,591 - +1.1 3,484,591 - -2.3 3,484,600 + -0.8 3,484,600 + +1.3 3,484,600 + +0.9 3,484,601 - +0.5 3,484,601 - -0.8 3,484,601 - +1.4 3,484,601 - +0.8 3,484,601 - +0.8 3,484,601 - +0.1 3,484,601 - -0.8 3,484,601 - -3.0 3,484,601 - -0.6 3,484,627 + -0.8 3,484,628 - +1.5 3,484,628 - -0.7 3,484,721 + Sama_2931 0.34 +1.2 3,484,750 + Sama_2931 0.42 +0.1 3,484,750 + Sama_2931 0.42 -1.1 3,484,762 + Sama_2931 0.45 +0.5 3,484,811 + Sama_2931 0.58 +2.0 3,484,857 + Sama_2931 0.71 -2.3 3,484,858 - Sama_2931 0.71 +1.7 3,484,858 - Sama_2931 0.71 +0.2 3,484,862 + Sama_2931 0.72 +1.1 3,484,862 + Sama_2931 0.72 -1.0 3,484,863 - Sama_2931 0.73 +1.5 3,484,863 - Sama_2931 0.73 -0.3 3,484,910 + Sama_2931 0.86 +2.9 3,484,910 + Sama_2931 0.86 +1.0 3,484,911 - Sama_2931 0.86 +0.4 3,484,911 - Sama_2931 0.86 +1.2 3,484,961 + -1.6 3,484,961 + -0.1 3,484,961 + +1.4 3,484,961 + -1.2 3,484,961 + +1.7 3,484,961 + -0.3 3,484,961 + -2.8 3,484,961 + -1.0 3,484,961 + -0.3 3,484,961 + -0.6 3,484,961 + +0.9 3,484,961 + +0.7 3,484,962 - +1.7 3,484,962 - +0.2 3,484,962 - -0.5 3,484,962 - +1.1 3,484,962 - +1.2 3,484,962 - +2.4 3,485,061 + -0.5 3,485,064 - -0.1 3,485,064 - -0.8 3,485,065 + -1.6 3,485,066 - -0.6 3,485,120 - -0.1 3,485,160 + +0.1 3,485,160 + -0.5 3,485,160 + -2.3 3,485,161 - +0.6 3,485,161 - +1.7 3,485,161 - -0.8 3,485,161 - -1.2 3,485,161 - +0.5 3,485,458 + Sama_2932 0.39 +0.0 3,485,458 + Sama_2932 0.39 -0.9 3,485,458 + Sama_2932 0.39 -0.6 3,485,458 + Sama_2932 0.39 -0.5 3,485,458 + Sama_2932 0.39 -1.7 3,485,459 - Sama_2932 0.39 -0.7 3,485,459 - Sama_2932 0.39 -0.3 3,485,459 - Sama_2932 0.39 -0.2 3,485,459 - Sama_2932 0.39 -1.1 3,485,557 + Sama_2932 0.54 +0.2 3,485,557 + Sama_2932 0.54 -0.0 3,485,557 + Sama_2932 0.54 +1.2 3,485,557 + Sama_2932 0.54 -0.9 3,485,557 + Sama_2932 0.54 -0.8 3,485,557 + Sama_2932 0.54 +2.1 3,485,558 - Sama_2932 0.54 +0.5 3,485,581 + Sama_2932 0.58 -0.7 3,485,581 + Sama_2932 0.58 -0.8 3,485,581 + Sama_2932 0.58 -1.8 3,485,582 - Sama_2932 0.58 +2.5 3,485,582 - Sama_2932 0.58 +1.2 3,485,582 - Sama_2932 0.58 +0.3 3,485,582 - Sama_2932 0.58 +0.4 3,485,582 - Sama_2932 0.58 -1.1 3,485,592 - Sama_2932 0.59 -2.4 3,485,592 - Sama_2932 0.59 +0.8 3,485,592 - Sama_2932 0.59 +2.0 3,485,592 - Sama_2932 0.59 +1.7 3,485,633 + Sama_2932 0.66 -0.7 3,485,633 + Sama_2932 0.66 -1.1 3,485,633 + Sama_2932 0.66 +0.4 3,485,633 + Sama_2932 0.66 +1.1 3,485,634 - Sama_2932 0.66 +1.3 3,485,634 - Sama_2932 0.66 -0.4 3,485,634 - Sama_2932 0.66 -3.2 3,485,634 - Sama_2932 0.66 +0.2 3,485,888 + +0.1 3,485,923 - -0.5 3,485,923 - -0.8 3,485,923 - +0.2 3,485,926 + +0.7 3,485,960 + +0.5 3,485,960 + -0.5
Or see this region's nucleotide sequence