Strain Fitness in Shewanella amazonensis SB2B around Sama_2907

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,454,700	-		Sama_2906	0.63	+0.4
3,454,700	-		Sama_2906	0.63	+2.0
3,454,750	+		Sama_2906	0.68	+0.6
3,454,751	-		Sama_2906	0.68	-0.4
3,454,855	-		Sama_2906	0.78	+1.3
3,454,876	-		Sama_2906	0.81	-0.9
3,454,950	+		Sama_2906	0.88	-0.7
3,454,951	-		Sama_2906	0.88	-1.4
3,454,951	-		Sama_2906	0.88	-2.2
3,454,951	-		Sama_2906	0.88	-0.6
3,455,009	+				+3.1
3,455,010	-				-0.3
3,455,010	-				-0.4
3,455,019	+				-1.0
3,455,020	-				+0.1
3,455,020	-				-0.3
3,455,020	-				-2.6
3,455,020	-				-1.4
3,455,029	+				-1.1
3,455,029	+				+1.3
3,455,042	+				+0.8
3,455,043	-				-0.2
3,455,043	-				-2.0
3,455,044	-				-0.2
3,455,072	-				-0.1
3,455,072	-				-2.6
3,455,096	+				+0.1
3,455,097	-				+0.5
3,455,108	+				+1.2
3,455,253	+				+0.3
3,455,265	+				+0.1
3,455,266	-				+0.4
3,455,266	-				-0.0
3,455,266	-				+0.3
3,455,274	-				+2.7
3,455,324	-				-0.8
3,455,328	-				-3.0
3,455,333	-				-0.4
3,455,336	+				-2.0
3,455,373	-				-2.4
3,455,383	-				-2.2
3,455,386	-				-0.5
3,455,386	-				+1.5
3,455,435	+				+0.9
3,455,443	+				+0.1
3,455,513	+				-0.6
3,455,588	+				-0.6
3,455,602	-				-0.9
3,455,608	-				-2.0
3,455,649	-				+0.3
3,455,666	-				-1.3
3,455,713	-				-1.8
3,455,806	-		Sama_2907	0.11	-1.1
3,455,834	-		Sama_2907	0.14	+1.1
3,455,959	+		Sama_2907	0.26	-3.3
3,456,000	+		Sama_2907	0.30	-1.1
3,456,000	+		Sama_2907	0.30	+2.0
3,456,025	+		Sama_2907	0.33	+0.3
3,456,026	-		Sama_2907	0.33	-2.0
3,456,026	-		Sama_2907	0.33	-2.6
3,456,026	-		Sama_2907	0.33	-1.7
3,456,030	+		Sama_2907	0.33	-0.2
3,456,030	+		Sama_2907	0.33	+1.1
3,456,030	+		Sama_2907	0.33	+1.2
3,456,077	-		Sama_2907	0.38	+2.5
3,456,089	+		Sama_2907	0.39	-0.1
3,456,090	-		Sama_2907	0.39	+0.3
3,456,112	+		Sama_2907	0.41	+0.5
3,456,113	-		Sama_2907	0.41	-1.4
3,456,183	-		Sama_2907	0.48	-1.2
3,456,191	-		Sama_2907	0.49	-2.1
3,456,191	-		Sama_2907	0.49	-0.6
3,456,203	-		Sama_2907	0.50	-1.2
3,456,219	+		Sama_2907	0.52	-0.3
3,456,219	+		Sama_2907	0.52	+0.6
3,456,219	+		Sama_2907	0.52	+1.9
3,456,219	+		Sama_2907	0.52	+0.7
3,456,219	+		Sama_2907	0.52	+2.9
3,456,219	+		Sama_2907	0.52	+0.4
3,456,219	+		Sama_2907	0.52	-0.1
3,456,220	-		Sama_2907	0.52	-1.1
3,456,220	-		Sama_2907	0.52	+0.1
3,456,220	-		Sama_2907	0.52	-0.4
3,456,222	+		Sama_2907	0.52	+1.0
3,456,222	+		Sama_2907	0.52	+1.7
3,456,222	+		Sama_2907	0.52	-1.9
3,456,223	-		Sama_2907	0.52	-0.7
3,456,223	-		Sama_2907	0.52	+0.8
3,456,223	-		Sama_2907	0.52	+1.3
3,456,230	-		Sama_2907	0.53	-0.2
3,456,272	-		Sama_2907	0.57	+0.4
3,456,272	-		Sama_2907	0.57	+0.7
3,456,288	+		Sama_2907	0.58	-1.3
3,456,289	-		Sama_2907	0.58	-2.2
3,456,289	-		Sama_2907	0.58	-1.1
3,456,297	+		Sama_2907	0.59	+2.6
3,456,300	+		Sama_2907	0.59	-1.3
3,456,300	+		Sama_2907	0.59	-1.2
3,456,300	+		Sama_2907	0.59	-3.5
3,456,300	+		Sama_2907	0.59	+0.4
3,456,301	-		Sama_2907	0.60	-0.6
3,456,301	-		Sama_2907	0.60	-0.9
3,456,301	-		Sama_2907	0.60	-1.3
3,456,301	-		Sama_2907	0.60	-0.5
3,456,301	-		Sama_2907	0.60	+1.9
3,456,303	+		Sama_2907	0.60	-1.4
3,456,303	+		Sama_2907	0.60	+0.3
3,456,303	+		Sama_2907	0.60	-0.1
3,456,304	-		Sama_2907	0.60	-0.4
3,456,304	-		Sama_2907	0.60	-0.2
3,456,304	-		Sama_2907	0.60	-1.4
3,456,304	-		Sama_2907	0.60	-1.7
3,456,304	-		Sama_2907	0.60	-1.1
3,456,342	+		Sama_2907	0.64	-0.8
3,456,342	+		Sama_2907	0.64	-0.3
3,456,342	+		Sama_2907	0.64	-0.3
3,456,342	+		Sama_2907	0.64	+0.0
3,456,342	+		Sama_2907	0.64	-1.9
3,456,342	+		Sama_2907	0.64	-1.3
3,456,343	-		Sama_2907	0.64	-0.3
3,456,343	-		Sama_2907	0.64	+1.0
3,456,343	-		Sama_2907	0.64	+0.7
3,456,343	-		Sama_2907	0.64	+1.1
3,456,343	-		Sama_2907	0.64	-1.3
3,456,343	-		Sama_2907	0.64	+0.3
3,456,345	+		Sama_2907	0.64	+0.1
3,456,346	-		Sama_2907	0.64	-1.4
3,456,402	+		Sama_2907	0.69	-1.1
3,456,403	-		Sama_2907	0.70	-0.1
3,456,420	+		Sama_2907	0.71	+1.7
3,456,420	+		Sama_2907	0.71	-2.2
3,456,420	+		Sama_2907	0.71	-0.9
3,456,420	+		Sama_2907	0.71	+2.3
3,456,421	-		Sama_2907	0.71	-0.2
3,456,421	-		Sama_2907	0.71	-1.7
3,456,460	+		Sama_2907	0.75	+0.3
3,456,460	+		Sama_2907	0.75	-0.2
3,456,460	+		Sama_2907	0.75	+0.7
3,456,460	+		Sama_2907	0.75	+1.3
3,456,461	-		Sama_2907	0.75	-2.1
3,456,461	-		Sama_2907	0.75	-1.2
3,456,461	-		Sama_2907	0.75	+1.1
3,456,480	+		Sama_2907	0.77	+0.1
3,456,480	+		Sama_2907	0.77	+1.3
3,456,480	+		Sama_2907	0.77	-2.4
3,456,480	+		Sama_2907	0.77	-0.2
3,456,480	+		Sama_2907	0.77	-0.2
3,456,481	-		Sama_2907	0.77	+1.1
3,456,481	-		Sama_2907	0.77	+2.3
3,456,481	-		Sama_2907	0.77	-1.6
3,456,481	-		Sama_2907	0.77	-0.0
3,456,481	-		Sama_2907	0.77	-1.3
3,456,498	+		Sama_2907	0.79	-0.6
3,456,498	+		Sama_2907	0.79	-2.1
3,456,505	-		Sama_2907	0.79	-2.3
3,456,505	-		Sama_2907	0.79	-0.9
3,456,516	+		Sama_2907	0.81	+0.4
3,456,522	+		Sama_2907	0.81	-1.8
3,456,523	-		Sama_2907	0.81	+0.3
3,456,523	-		Sama_2907	0.81	+1.9
3,456,551	+		Sama_2907	0.84	-1.6
3,456,552	-		Sama_2907	0.84	-1.9
3,456,552	-		Sama_2907	0.84	+0.6
3,456,589	+		Sama_2907	0.88	-0.3
3,456,589	+		Sama_2907	0.88	-0.1
3,456,590	-		Sama_2907	0.88	-2.1
3,456,590	-		Sama_2907	0.88	-0.7
3,456,590	-		Sama_2907	0.88	-0.1
3,456,593	+		Sama_2907	0.88	+0.1
3,456,593	+		Sama_2907	0.88	+0.3
3,456,593	+		Sama_2907	0.88	-1.7
3,456,594	-		Sama_2907	0.88	-0.0
3,456,594	-		Sama_2907	0.88	-2.7
3,456,599	+		Sama_2907	0.89	-0.5
3,456,599	+		Sama_2907	0.89	+0.4
3,456,600	-		Sama_2907	0.89	-1.3
3,456,670	-				+0.9
3,456,670	-				-0.1
3,456,671	+				-1.3
3,456,671	+				-0.4
3,456,671	+				-1.6
3,456,671	+				-0.1
3,456,672	-				+0.0
3,456,672	-				+2.2
3,456,672	-				+0.1
3,456,677	+				+1.8
3,456,677	+				+1.5
3,456,677	+				+0.7
3,456,677	+				-1.2
3,456,677	+				+0.6
3,456,677	+				-0.9
3,456,678	-				-1.4
3,456,678	-				-1.0
3,456,678	-				-1.1
3,456,693	+				-0.3
3,456,693	+				-0.3
3,456,694	-				+2.7
3,456,694	-				-1.2
3,456,699	+				-0.7
3,456,700	-				-1.4
3,456,709	+				+0.4
3,456,709	+				+0.3
3,456,710	-				-0.5
3,456,710	-				+0.7
3,456,710	-				-1.0
3,456,718	+				-1.2
3,456,718	+				-1.5
3,456,719	-				+1.8
3,456,734	+				-1.3
3,456,735	-				-2.0
3,456,735	-				+0.4
3,456,754	+				+1.7
3,456,754	+				-1.6
3,456,754	+				+0.7
3,456,755	-				-0.4
3,456,755	-				-1.4
3,456,887	+				-0.0
3,457,046	-		Sama_2908	0.11	+0.4
3,457,050	-		Sama_2908	0.11	+0.7
3,457,050	-		Sama_2908	0.11	-0.3
3,457,184	+		Sama_2908	0.19	-2.6
3,457,184	+		Sama_2908	0.19	+1.9
3,457,193	+		Sama_2908	0.19	-0.2
3,457,278	+		Sama_2908	0.24	+1.3
3,457,387	-		Sama_2908	0.30	-0.3
3,457,387	-		Sama_2908	0.30	-2.7
3,457,387	-		Sama_2908	0.30	-0.8
3,457,397	+		Sama_2908	0.31	-0.9
3,457,397	+		Sama_2908	0.31	-1.8
3,457,398	-		Sama_2908	0.31	-0.2
3,457,398	-		Sama_2908	0.31	-3.1
3,457,398	-		Sama_2908	0.31	+0.1
3,457,398	-		Sama_2908	0.31	+0.1
3,457,398	-		Sama_2908	0.31	-0.7
3,457,398	-		Sama_2908	0.31	+0.2
3,457,405	-		Sama_2908	0.31	+0.3
3,457,422	-		Sama_2908	0.32	+0.4
3,457,449	+		Sama_2908	0.34	+0.9
3,457,449	+		Sama_2908	0.34	-0.2
3,457,503	+		Sama_2908	0.37	+0.2
3,457,504	-		Sama_2908	0.37	-1.1
3,457,513	+		Sama_2908	0.37	+0.9
3,457,513	+		Sama_2908	0.37	+1.1
3,457,513	+		Sama_2908	0.37	-0.6
3,457,513	+		Sama_2908	0.37	-0.0
3,457,514	-		Sama_2908	0.37	+1.0
3,457,514	-		Sama_2908	0.37	-1.1
3,457,514	-		Sama_2908	0.37	-1.9
3,457,514	-		Sama_2908	0.37	+2.5
3,457,514	-		Sama_2908	0.37	-0.3
3,457,514	-		Sama_2908	0.37	-2.2
3,457,569	+		Sama_2908	0.41	+0.1
3,457,576	-		Sama_2908	0.41	+2.9
3,457,576	-		Sama_2908	0.41	+0.0
3,457,654	+		Sama_2908	0.45	+0.1
3,457,655	-		Sama_2908	0.45	-0.3
3,457,655	-		Sama_2908	0.45	-0.6
3,457,655	-		Sama_2908	0.45	+4.3