Strain Fitness in Shewanella amazonensis SB2B around Sama_2803

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,341,200	+		Sama_2801	0.62	+0.1
3,341,200	+		Sama_2801	0.62	+0.9
3,341,200	+		Sama_2801	0.62	+0.4
3,341,201	-		Sama_2801	0.62	+1.5
3,341,201	-		Sama_2801	0.62	+2.0
3,341,201	-		Sama_2801	0.62	+0.4
3,341,201	-		Sama_2801	0.62	+2.5
3,341,413	-		Sama_2801	0.79	-1.0
3,341,465	+		Sama_2801	0.83	-1.2
3,341,524	+		Sama_2801	0.88	+1.2
3,341,524	+		Sama_2801	0.88	-0.3
3,341,525	-		Sama_2801	0.88	+0.5
3,341,592	+				+0.5
3,341,593	-				-2.6
3,341,615	+				-0.6
3,341,616	-				+0.0
3,341,616	-				+0.3
3,341,616	-				-0.5
3,341,616	-				-0.2
3,341,649	+				-0.4
3,341,659	-				+0.1
3,341,674	+				-1.2
3,341,693	+				-0.1
3,341,693	+				-1.3
3,341,694	-				-0.0
3,341,860	-		Sama_2802	0.38	-0.2
3,341,860	-		Sama_2802	0.38	+0.1
3,341,860	-		Sama_2802	0.38	-2.1
3,341,860	-		Sama_2802	0.38	-1.3
3,341,876	-		Sama_2802	0.42	-0.2
3,341,973	+		Sama_2802	0.69	-1.9
3,342,001	+		Sama_2802	0.77	+1.7
3,342,004	+		Sama_2802	0.78	-2.8
3,342,004	+		Sama_2802	0.78	-1.5
3,342,005	-		Sama_2802	0.78	+3.3
3,342,005	-		Sama_2802	0.78	+0.9
3,342,005	-		Sama_2802	0.78	+0.0
3,342,033	-		Sama_2802	0.86	+0.1
3,342,075	+				+0.4
3,342,076	-				-1.9
3,342,076	-				+1.4
3,342,076	-				+0.5
3,342,076	-				+0.2
3,342,076	-				-1.8
3,342,077	+				-1.3
3,342,077	+				-2.4
3,342,077	+				-3.0
3,342,078	-				-2.3
3,342,104	+				+1.9
3,342,105	-				-1.5
3,342,109	+				-1.8
3,342,110	-				-0.9
3,342,110	-				+1.4
3,342,151	+				-0.9
3,342,151	+				-0.8
3,342,151	+				-0.2
3,342,151	+				-0.3
3,342,152	-				-1.3
3,342,152	-				-1.6
3,342,152	-				-2.1
3,342,152	-				-1.9
3,342,152	-				+1.2
3,342,171	-				-1.6
3,342,171	-				-1.5
3,342,190	-				-2.3
3,342,190	-				-2.2
3,342,247	+		Sama_2803	0.14	-2.0
3,342,247	+		Sama_2803	0.14	-0.6
3,342,333	+		Sama_2803	0.30	+2.3
3,342,333	+		Sama_2803	0.30	+1.7
3,342,333	+		Sama_2803	0.30	+0.2
3,342,333	+		Sama_2803	0.30	-0.3
3,342,333	+		Sama_2803	0.30	-0.0
3,342,334	-		Sama_2803	0.30	-2.6
3,342,430	-		Sama_2803	0.48	-2.6
3,342,430	-		Sama_2803	0.48	+1.2
3,342,524	+		Sama_2803	0.66	+0.2
3,342,542	-		Sama_2803	0.70	+1.7
3,342,542	-		Sama_2803	0.70	+0.9
3,342,561	+		Sama_2803	0.73	-0.5
3,342,561	+		Sama_2803	0.73	-0.4
3,342,561	+		Sama_2803	0.73	+0.9
3,342,561	+		Sama_2803	0.73	-1.6
3,342,561	+		Sama_2803	0.73	+0.1
3,342,561	+		Sama_2803	0.73	+2.3
3,342,561	+		Sama_2803	0.73	+0.7
3,342,561	+		Sama_2803	0.73	+0.1
3,342,561	+		Sama_2803	0.73	+0.3
3,342,561	+		Sama_2803	0.73	+1.1
3,342,562	-		Sama_2803	0.73	-1.1
3,342,562	-		Sama_2803	0.73	+1.8
3,342,562	-		Sama_2803	0.73	+1.7
3,342,563	+		Sama_2803	0.73	-0.3
3,342,563	+		Sama_2803	0.73	-1.1
3,342,563	+		Sama_2803	0.73	-1.7
3,342,563	+		Sama_2803	0.73	+1.7
3,342,563	+		Sama_2803	0.73	-0.6
3,342,563	+		Sama_2803	0.73	+2.0
3,342,563	+		Sama_2803	0.73	+2.2
3,342,564	-		Sama_2803	0.74	+0.6
3,342,700	+				+1.0
3,342,730	+				-1.1
3,342,730	+				-1.5
3,342,730	+				+0.2
3,342,730	+				-0.9
3,342,731	-				+0.4
3,342,731	-				+1.0
3,342,731	-				+0.3
3,342,731	-				-0.3
3,342,731	-				+0.1
3,342,731	-				-0.5
3,342,731	-				-1.6
3,342,731	-				+0.7
3,342,731	-				-0.3
3,342,733	+				+0.0
3,342,734	-				-0.3
3,342,734	-				+1.4
3,342,753	+				+0.2
3,342,773	+				+0.1
3,342,773	+				-1.1
3,342,774	-				+1.3
3,342,774	-				-1.2
3,342,787	+				+0.7
3,342,788	-				-0.6
3,342,821	+				-0.9
3,342,821	+				+1.6
3,342,821	+				+0.4
3,342,821	+				-0.5
3,342,821	+				-2.8
3,342,821	+				+1.3
3,342,821	+				-0.9
3,342,822	-				+0.3
3,342,822	-				+0.7
3,342,822	-				+0.8
3,342,822	-				-0.4
3,342,822	-				-1.6
3,342,822	-				+0.7
3,342,822	-				+0.3
3,342,822	-				+0.4
3,342,822	-				+0.8
3,342,822	-				+0.6
3,342,822	-				-0.2
3,342,822	-				+0.1
3,342,822	-				-0.3
3,342,832	+				-1.3
3,342,832	+				-2.4
3,342,833	-				-0.9
3,342,833	-				+0.0
3,342,833	-				-0.2
3,342,833	-				-0.8
3,342,859	+				-0.6
3,342,879	-				-0.7
3,342,879	-				-1.6
3,342,879	-				+0.9
3,343,009	+		Sama_2804	0.10	-1.4
3,343,071	+		Sama_2804	0.14	-1.3
3,343,071	+		Sama_2804	0.14	-2.3
3,343,071	+		Sama_2804	0.14	+0.7
3,343,095	+		Sama_2804	0.16	-0.9
3,343,095	+		Sama_2804	0.16	-0.2
3,343,095	+		Sama_2804	0.16	-1.8
3,343,096	-		Sama_2804	0.16	-0.7
3,343,096	-		Sama_2804	0.16	+0.1
3,343,124	+		Sama_2804	0.18	+0.5
3,343,124	+		Sama_2804	0.18	-3.0
3,343,124	+		Sama_2804	0.18	+0.3
3,343,124	+		Sama_2804	0.18	+1.7
3,343,125	-		Sama_2804	0.18	+2.4
3,343,159	-		Sama_2804	0.20	+0.1
3,343,184	+		Sama_2804	0.22	+1.6
3,343,184	+		Sama_2804	0.22	+0.3
3,343,184	+		Sama_2804	0.22	+0.1
3,343,184	+		Sama_2804	0.22	+1.2
3,343,184	+		Sama_2804	0.22	-0.1
3,343,184	+		Sama_2804	0.22	-1.8
3,343,185	-		Sama_2804	0.22	+0.7
3,343,185	-		Sama_2804	0.22	-2.0
3,343,223	+		Sama_2804	0.25	-0.3
3,343,224	-		Sama_2804	0.25	+0.9
3,343,259	+		Sama_2804	0.27	-0.9
3,343,260	-		Sama_2804	0.27	-3.3
3,343,294	-		Sama_2804	0.30	+1.8
3,343,425	+		Sama_2804	0.38	-0.3
3,343,426	-		Sama_2804	0.39	-1.5
3,343,426	-		Sama_2804	0.39	-0.1
3,343,429	+		Sama_2804	0.39	-1.3
3,343,429	+		Sama_2804	0.39	-2.0
3,343,429	+		Sama_2804	0.39	-0.2
3,343,429	+		Sama_2804	0.39	+0.9
3,343,429	+		Sama_2804	0.39	-1.3
3,343,429	+		Sama_2804	0.39	+0.3
3,343,429	+		Sama_2804	0.39	-0.8
3,343,429	+		Sama_2804	0.39	+0.1
3,343,429	+		Sama_2804	0.39	+0.1
3,343,429	+		Sama_2804	0.39	+2.0
3,343,429	+		Sama_2804	0.39	-0.3
3,343,429	+		Sama_2804	0.39	+0.5
3,343,430	-		Sama_2804	0.39	-1.2
3,343,430	-		Sama_2804	0.39	-0.6
3,343,430	-		Sama_2804	0.39	+0.7
3,343,430	-		Sama_2804	0.39	-0.3
3,343,430	-		Sama_2804	0.39	+1.8
3,343,430	-		Sama_2804	0.39	+0.1
3,343,430	-		Sama_2804	0.39	-3.2
3,343,438	+		Sama_2804	0.39	+1.3
3,343,613	+		Sama_2804	0.51	-1.6
3,343,652	-		Sama_2804	0.54	+0.8
3,343,657	+		Sama_2804	0.54	-0.3
3,343,658	-		Sama_2804	0.54	+1.4
3,343,662	+		Sama_2804	0.55	-1.4
3,343,662	+		Sama_2804	0.55	-1.8
3,343,663	-		Sama_2804	0.55	-0.6
3,343,663	-		Sama_2804	0.55	+0.9
3,343,663	-		Sama_2804	0.55	-0.4
3,343,663	-		Sama_2804	0.55	-1.5
3,343,663	-		Sama_2804	0.55	+0.4
3,343,663	-		Sama_2804	0.55	+1.7