Strain Fitness in Shewanella amazonensis SB2B around Sama_2738

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,270,974	+		Sama_2737	0.53	-1.6
3,271,037	+		Sama_2737	0.57	-1.7
3,271,038	-		Sama_2737	0.57	-0.7
3,271,038	-		Sama_2737	0.57	-0.8
3,271,038	-		Sama_2737	0.57	-2.7
3,271,107	+		Sama_2737	0.61	-0.8
3,271,107	+		Sama_2737	0.61	-0.5
3,271,107	+		Sama_2737	0.61	-1.3
3,271,108	-		Sama_2737	0.61	+3.1
3,271,110	+		Sama_2737	0.61	-0.1
3,271,110	+		Sama_2737	0.61	-1.3
3,271,110	+		Sama_2737	0.61	+0.7
3,271,110	+		Sama_2737	0.61	-0.6
3,271,110	+		Sama_2737	0.61	-1.8
3,271,110	+		Sama_2737	0.61	-0.9
3,271,110	+		Sama_2737	0.61	-1.6
3,271,110	+		Sama_2737	0.61	+1.4
3,271,110	+		Sama_2737	0.61	-0.3
3,271,110	+		Sama_2737	0.61	+0.7
3,271,110	+		Sama_2737	0.61	-1.9
3,271,110	+		Sama_2737	0.61	-3.6
3,271,110	+		Sama_2737	0.61	-2.2
3,271,110	+		Sama_2737	0.61	-1.7
3,271,111	-		Sama_2737	0.61	+0.4
3,271,111	-		Sama_2737	0.61	-0.7
3,271,111	-		Sama_2737	0.61	-2.3
3,271,111	-		Sama_2737	0.61	+0.0
3,271,111	-		Sama_2737	0.61	-0.5
3,271,111	-		Sama_2737	0.61	-0.8
3,271,111	-		Sama_2737	0.61	-2.4
3,271,111	-		Sama_2737	0.61	-1.1
3,271,111	-		Sama_2737	0.61	-1.1
3,271,111	-		Sama_2737	0.61	+0.9
3,271,111	-		Sama_2737	0.61	-0.8
3,271,111	-		Sama_2737	0.61	-1.5
3,271,144	-		Sama_2737	0.63	-0.1
3,271,144	-		Sama_2737	0.63	-0.0
3,271,144	-		Sama_2737	0.63	-1.0
3,271,145	+		Sama_2737	0.63	-1.9
3,271,145	+		Sama_2737	0.63	-1.9
3,271,146	-		Sama_2737	0.63	+0.1
3,271,146	-		Sama_2737	0.63	-1.8
3,271,204	+		Sama_2737	0.66	-0.9
3,271,204	+		Sama_2737	0.66	-0.2
3,271,204	+		Sama_2737	0.66	+1.2
3,271,268	+		Sama_2737	0.70	+0.3
3,271,269	-		Sama_2737	0.70	+2.1
3,271,272	+		Sama_2737	0.70	-0.8
3,271,272	+		Sama_2737	0.70	-1.8
3,271,272	+		Sama_2737	0.70	-1.2
3,271,272	+		Sama_2737	0.70	-1.1
3,271,272	+		Sama_2737	0.70	-1.9
3,271,272	+		Sama_2737	0.70	+0.8
3,271,272	+		Sama_2737	0.70	-0.3
3,271,272	+		Sama_2737	0.70	+0.1
3,271,273	-		Sama_2737	0.70	+2.3
3,271,377	-		Sama_2737	0.76	-0.2
3,271,395	-		Sama_2737	0.77	-0.2
3,271,395	-		Sama_2737	0.77	+0.5
3,271,456	+		Sama_2737	0.81	-1.5
3,271,476	-		Sama_2737	0.82	+0.2
3,271,476	-		Sama_2737	0.82	+0.8
3,271,497	-		Sama_2737	0.83	+1.8
3,271,574	+		Sama_2737	0.88	-0.9
3,271,574	+		Sama_2737	0.88	-1.1
3,271,574	+		Sama_2737	0.88	-1.1
3,271,575	-		Sama_2737	0.88	+1.2
3,271,575	-		Sama_2737	0.88	-0.5
3,271,634	+				-1.8
3,271,634	+				+1.7
3,271,634	+				-0.3
3,271,634	+				+0.2
3,271,634	+				-0.5
3,271,634	+				-1.7
3,271,634	+				-0.7
3,271,634	+				-1.8
3,271,634	+				-2.7
3,271,635	-				-0.7
3,271,635	-				+1.0
3,271,635	-				-0.8
3,271,687	-				-1.3
3,271,714	-				+0.9
3,271,714	-				-0.1
3,271,777	+				-1.7
3,271,777	+				-0.9
3,271,777	+				-1.8
3,271,777	+				-2.5
3,271,778	-				+0.6
3,271,778	-				+0.1
3,271,821	+				-1.0
3,271,821	+				+0.8
3,271,821	+				-1.3
3,271,821	+				-0.2
3,271,822	-				-1.7
3,271,822	-				+0.1
3,271,822	-				-0.7
3,271,822	-				+0.1
3,271,822	-				-1.9
3,271,822	-				+0.9
3,271,822	-				+0.3
3,271,822	-				-0.3
3,271,873	+				-0.8
3,271,977	+		Sama_2738	0.14	-0.3
3,271,978	-		Sama_2738	0.15	-0.8
3,272,002	+		Sama_2738	0.18	-1.2
3,272,003	-		Sama_2738	0.18	+2.7
3,272,131	-		Sama_2738	0.36	+0.3
3,272,131	-		Sama_2738	0.36	-1.3
3,272,181	-		Sama_2738	0.42	+1.8
3,272,182	+		Sama_2738	0.43	+0.5
3,272,183	-		Sama_2738	0.43	-0.8
3,272,183	-		Sama_2738	0.43	-2.7
3,272,215	+		Sama_2738	0.47	-2.1
3,272,271	-		Sama_2738	0.55	-0.3
3,272,271	-		Sama_2738	0.55	-0.3
3,272,368	+		Sama_2738	0.68	-2.4
3,272,369	-		Sama_2738	0.68	+0.1
3,272,410	+		Sama_2738	0.74	+0.4
3,272,410	+		Sama_2738	0.74	-1.8
3,272,411	-		Sama_2738	0.74	-0.1
3,272,411	-		Sama_2738	0.74	-1.1
3,272,629	+				-0.5
3,272,630	-				-2.0
3,272,630	-				-1.3
3,272,630	-				-1.0
3,272,641	+				+4.0
3,272,643	+				-0.6
3,272,643	+				+1.5
3,272,643	+				+1.3
3,272,643	+				+2.7
3,272,644	-				+1.2
3,272,644	-				-1.5
3,272,644	-				-1.9
3,272,644	-				+0.7
3,272,644	-				-0.1
3,272,696	+				-0.1
3,272,697	-				-2.3
3,272,714	+				+0.9
3,272,714	+				-0.7
3,272,715	-				-0.2
3,272,801	+				-1.1
3,272,801	+				-1.7
3,272,801	+				+0.1
3,272,801	+				-2.2
3,272,817	-				-0.1
3,272,848	+		Sama_2739	0.11	+0.7
3,272,884	-		Sama_2739	0.15	-1.7
3,272,884	-		Sama_2739	0.15	-1.3
3,272,945	+		Sama_2739	0.21	-1.5
3,272,945	+		Sama_2739	0.21	-0.5
3,272,945	+		Sama_2739	0.21	-1.5
3,272,946	-		Sama_2739	0.21	-0.2
3,272,946	-		Sama_2739	0.21	-0.7
3,272,953	-		Sama_2739	0.22	-1.9
3,273,030	+		Sama_2739	0.30	-0.9
3,273,031	-		Sama_2739	0.30	-1.9
3,273,121	-		Sama_2739	0.39	-1.8
3,273,129	+		Sama_2739	0.40	-1.3
3,273,129	+		Sama_2739	0.40	-0.3
3,273,129	+		Sama_2739	0.40	+0.1
3,273,129	+		Sama_2739	0.40	-1.9
3,273,130	-		Sama_2739	0.40	+1.2
3,273,130	-		Sama_2739	0.40	-1.1
3,273,206	+		Sama_2739	0.48	-1.1
3,273,207	-		Sama_2739	0.48	-1.1
3,273,207	-		Sama_2739	0.48	-0.9
3,273,241	+		Sama_2739	0.52	-2.5
3,273,241	+		Sama_2739	0.52	-1.7
3,273,242	-		Sama_2739	0.52	-0.2
3,273,386	+		Sama_2739	0.67	+0.1
3,273,387	-		Sama_2739	0.67	-2.7
3,273,411	+		Sama_2739	0.69	-2.9
3,273,411	+		Sama_2739	0.69	+0.3
3,273,411	+		Sama_2739	0.69	-1.5
3,273,411	+		Sama_2739	0.69	-2.8
3,273,411	+		Sama_2739	0.69	-1.8
3,273,411	+		Sama_2739	0.69	-0.3
3,273,412	-		Sama_2739	0.70	-0.7
3,273,461	+		Sama_2739	0.75	-1.5
3,273,461	+		Sama_2739	0.75	-2.3
3,273,461	+		Sama_2739	0.75	-0.9
3,273,480	+		Sama_2739	0.77	+0.7
3,273,481	-		Sama_2739	0.77	-1.7
3,273,481	-		Sama_2739	0.77	+0.1
3,273,499	+		Sama_2739	0.79	-0.3
3,273,499	+		Sama_2739	0.79	+0.5
3,273,500	-		Sama_2739	0.79	-1.3
3,273,500	-		Sama_2739	0.79	-2.4
3,273,500	-		Sama_2739	0.79	+2.7
3,273,500	-		Sama_2739	0.79	-0.7
3,273,501	+		Sama_2739	0.79	-0.7
3,273,502	-		Sama_2739	0.79	+0.2
3,273,502	-		Sama_2739	0.79	+0.7
3,273,543	+		Sama_2739	0.83	+0.7
3,273,548	+		Sama_2739	0.84	+0.5
3,273,556	+		Sama_2739	0.84	-1.4
3,273,556	+		Sama_2739	0.84	-1.9
3,273,557	-		Sama_2739	0.85	+0.1
3,273,557	-		Sama_2739	0.85	-0.2
3,273,557	-		Sama_2739	0.85	-1.5
3,273,557	-		Sama_2739	0.85	-1.1
3,273,557	-		Sama_2739	0.85	-1.5
3,273,565	-		Sama_2739	0.85	+1.0