Strain Fitness in Shewanella amazonensis SB2B around Sama_2672

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,196,246	+				-1.3
3,196,246	+				-0.3
3,196,247	-				-1.5
3,196,260	+				-1.3
3,196,260	+				-0.5
3,196,261	-				+3.0
3,196,270	-				-1.3
3,196,338	+		Sama_2671	0.12	+1.0
3,196,338	+		Sama_2671	0.12	-0.3
3,196,339	-		Sama_2671	0.12	+0.8
3,196,370	+		Sama_2671	0.16	-1.4
3,196,371	-		Sama_2671	0.16	-0.9
3,196,371	-		Sama_2671	0.16	-0.6
3,196,453	+		Sama_2671	0.26	+0.1
3,196,454	-		Sama_2671	0.26	-1.8
3,196,454	-		Sama_2671	0.26	-0.4
3,196,593	+		Sama_2671	0.42	-2.4
3,196,593	+		Sama_2671	0.42	-0.4
3,196,636	-		Sama_2671	0.48	-3.1
3,196,636	-		Sama_2671	0.48	-1.4
3,196,672	+		Sama_2671	0.52	+1.5
3,196,673	-		Sama_2671	0.52	-1.2
3,196,677	+		Sama_2671	0.52	-0.5
3,196,677	+		Sama_2671	0.52	+0.6
3,196,677	+		Sama_2671	0.52	-1.4
3,196,677	+		Sama_2671	0.52	+0.1
3,196,677	+		Sama_2671	0.52	-1.8
3,196,677	+		Sama_2671	0.52	-0.8
3,196,678	-		Sama_2671	0.53	+1.3
3,196,710	+		Sama_2671	0.56	+0.7
3,196,710	+		Sama_2671	0.56	-0.7
3,196,710	+		Sama_2671	0.56	-1.5
3,196,710	+		Sama_2671	0.56	-0.9
3,196,710	+		Sama_2671	0.56	-0.1
3,196,710	+		Sama_2671	0.56	-0.7
3,196,710	+		Sama_2671	0.56	-1.2
3,196,710	+		Sama_2671	0.56	-1.1
3,196,710	+		Sama_2671	0.56	+0.9
3,196,710	+		Sama_2671	0.56	+1.2
3,196,710	+		Sama_2671	0.56	-1.5
3,196,710	+		Sama_2671	0.56	-0.1
3,196,710	+		Sama_2671	0.56	+0.9
3,196,711	-		Sama_2671	0.56	-1.9
3,196,711	-		Sama_2671	0.56	-0.7
3,196,711	-		Sama_2671	0.56	-0.9
3,196,711	-		Sama_2671	0.56	+1.8
3,196,711	-		Sama_2671	0.56	-1.1
3,196,711	-		Sama_2671	0.56	+1.2
3,196,711	-		Sama_2671	0.56	+1.1
3,196,711	-		Sama_2671	0.56	-1.4
3,196,711	-		Sama_2671	0.56	-2.6
3,196,711	-		Sama_2671	0.56	+0.7
3,196,715	-		Sama_2671	0.57	-0.4
3,196,715	-		Sama_2671	0.57	-1.8
3,196,751	-		Sama_2671	0.61	-1.7
3,196,751	-		Sama_2671	0.61	-0.0
3,196,766	+		Sama_2671	0.63	-0.5
3,196,849	+		Sama_2671	0.73	+0.5
3,196,849	+		Sama_2671	0.73	-0.4
3,196,850	-		Sama_2671	0.73	-0.3
3,196,859	+		Sama_2671	0.74	-1.5
3,196,859	+		Sama_2671	0.74	+2.1
3,196,859	+		Sama_2671	0.74	-0.9
3,196,860	-		Sama_2671	0.74	-0.4
3,196,860	-		Sama_2671	0.74	-2.2
3,196,860	-		Sama_2671	0.74	-1.2
3,196,861	+		Sama_2671	0.74	-1.2
3,196,861	+		Sama_2671	0.74	-0.9
3,196,861	+		Sama_2671	0.74	-0.5
3,196,861	+		Sama_2671	0.74	-2.7
3,196,861	+		Sama_2671	0.74	+0.9
3,196,861	+		Sama_2671	0.74	+0.1
3,196,861	+		Sama_2671	0.74	-1.9
3,196,861	+		Sama_2671	0.74	+0.4
3,196,861	+		Sama_2671	0.74	+1.4
3,196,862	-		Sama_2671	0.74	-2.9
3,196,862	-		Sama_2671	0.74	+1.8
3,196,862	-		Sama_2671	0.74	-0.9
3,196,862	-		Sama_2671	0.74	-0.2
3,196,862	-		Sama_2671	0.74	-0.5
3,196,921	+		Sama_2671	0.81	+1.4
3,196,980	+		Sama_2671	0.88	-0.4
3,196,980	+		Sama_2671	0.88	+0.4
3,196,980	+		Sama_2671	0.88	+0.5
3,196,980	+		Sama_2671	0.88	+2.9
3,196,980	+		Sama_2671	0.88	+0.5
3,196,981	-		Sama_2671	0.88	+0.8
3,196,981	-		Sama_2671	0.88	+3.2
3,197,010	+				-0.5
3,197,090	-				+0.5
3,197,162	-				-2.7
3,197,162	-				+1.6
3,197,162	-				-3.4
3,197,162	-				-1.9
3,197,162	-				-1.5
3,197,180	+				-2.5
3,197,180	+				-0.1
3,197,180	+				-0.8
3,197,180	+				-1.1
3,197,180	+				-0.2
3,197,180	+				+0.2
3,197,180	+				+0.4
3,197,181	-				+1.4
3,197,181	-				+0.6
3,197,181	-				-2.1
3,197,181	-				+2.3
3,197,273	-				+3.0
3,197,280	+				-1.3
3,197,280	+				+1.2
3,197,281	-				-2.9
3,197,281	-				-0.7
3,197,339	+				+0.6
3,197,339	+				+0.4
3,197,339	+				-1.4
3,197,339	+				+2.1
3,197,339	+				+2.7
3,197,339	+				+1.3
3,197,339	+				+0.9
3,197,339	+				+3.6
3,197,339	+				-0.4
3,197,340	-				-0.9
3,197,340	-				-2.1
3,197,340	-				+1.6
3,197,340	-				+0.3
3,197,340	-				-2.4
3,197,352	+		Sama_2672	0.10	+0.9
3,197,353	-		Sama_2672	0.10	-0.5
3,197,356	+		Sama_2672	0.10	+0.4
3,197,356	+		Sama_2672	0.10	-0.3
3,197,356	+		Sama_2672	0.10	+3.2
3,197,356	+		Sama_2672	0.10	+1.7
3,197,356	+		Sama_2672	0.10	+1.3
3,197,356	+		Sama_2672	0.10	+0.3
3,197,357	-		Sama_2672	0.10	-1.1
3,197,357	-		Sama_2672	0.10	+0.5
3,197,357	-		Sama_2672	0.10	+0.1
3,197,357	-		Sama_2672	0.10	+1.6
3,197,357	-		Sama_2672	0.10	-1.5
3,197,357	-		Sama_2672	0.10	-0.4
3,197,357	-		Sama_2672	0.10	-0.7
3,197,410	-		Sama_2672	0.14	-1.5
3,197,410	-		Sama_2672	0.14	+0.5
3,197,410	-		Sama_2672	0.14	+1.1
3,197,410	-		Sama_2672	0.14	+0.1
3,197,410	-		Sama_2672	0.14	-1.9
3,197,414	+		Sama_2672	0.14	-0.6
3,197,415	-		Sama_2672	0.14	+1.0
3,197,415	-		Sama_2672	0.14	+1.1
3,197,415	-		Sama_2672	0.14	+2.3
3,197,427	-		Sama_2672	0.15	-1.5
3,197,639	+		Sama_2672	0.29	+1.8
3,197,639	+		Sama_2672	0.29	+2.0
3,197,639	+		Sama_2672	0.29	-1.5
3,197,639	+		Sama_2672	0.29	+0.4
3,197,640	-		Sama_2672	0.30	+1.1
3,197,640	-		Sama_2672	0.30	+1.9
3,197,640	-		Sama_2672	0.30	-0.7
3,197,640	-		Sama_2672	0.30	+0.5
3,197,649	+		Sama_2672	0.30	-2.5
3,197,649	+		Sama_2672	0.30	-2.1
3,197,649	+		Sama_2672	0.30	+2.4
3,197,649	+		Sama_2672	0.30	+3.2
3,197,649	+		Sama_2672	0.30	+0.5
3,197,650	-		Sama_2672	0.30	+1.2
3,197,650	-		Sama_2672	0.30	+2.0
3,197,650	-		Sama_2672	0.30	+2.5
3,197,650	-		Sama_2672	0.30	+2.2
3,197,650	-		Sama_2672	0.30	+1.9
3,197,769	+		Sama_2672	0.38	+0.6
3,197,769	+		Sama_2672	0.38	+1.8
3,197,769	+		Sama_2672	0.38	-0.2
3,197,769	+		Sama_2672	0.38	+2.8
3,197,769	+		Sama_2672	0.38	-2.4
3,197,769	+		Sama_2672	0.38	+1.8
3,197,770	-		Sama_2672	0.38	-0.4
3,197,775	+		Sama_2672	0.39	-0.5
3,197,775	+		Sama_2672	0.39	+1.6
3,197,776	-		Sama_2672	0.39	+2.3
3,197,776	-		Sama_2672	0.39	+0.1
3,197,776	-		Sama_2672	0.39	-0.4
3,197,776	-		Sama_2672	0.39	+0.3
3,197,776	-		Sama_2672	0.39	+0.5
3,197,784	+		Sama_2672	0.39	+1.4
3,197,784	+		Sama_2672	0.39	+2.8
3,197,785	-		Sama_2672	0.39	+0.6
3,197,785	-		Sama_2672	0.39	+2.0
3,197,889	+		Sama_2672	0.46	+2.5
3,197,889	+		Sama_2672	0.46	+0.1
3,197,889	+		Sama_2672	0.46	+2.6
3,197,890	-		Sama_2672	0.46	-1.5
3,198,117	+		Sama_2672	0.62	-0.4
3,198,118	-		Sama_2672	0.62	+1.0
3,198,118	-		Sama_2672	0.62	+0.4
3,198,118	-		Sama_2672	0.62	+1.5
3,198,118	-		Sama_2672	0.62	+0.8
3,198,121	+		Sama_2672	0.62	+2.4
3,198,122	-		Sama_2672	0.62	+1.4
3,198,325	-		Sama_2672	0.76	+1.2
3,198,405	+		Sama_2672	0.81	-0.9
3,198,406	-		Sama_2672	0.81	-0.2
3,198,406	-		Sama_2672	0.81	-1.4
3,198,418	-		Sama_2672	0.82	+0.7
3,198,426	+		Sama_2672	0.83	+2.6
3,198,426	+		Sama_2672	0.83	+5.8
3,198,426	+		Sama_2672	0.83	+0.6
3,198,426	+		Sama_2672	0.83	+1.6
3,198,427	-		Sama_2672	0.83	-1.2
3,198,427	-		Sama_2672	0.83	+2.6
3,198,428	+		Sama_2672	0.83	+2.4
3,198,428	+		Sama_2672	0.83	-0.7
3,198,429	-		Sama_2672	0.83	-0.9
3,198,429	-		Sama_2672	0.83	+1.2
3,198,477	+		Sama_2672	0.86	-0.5
3,198,478	-		Sama_2672	0.86	+0.2
3,198,478	-		Sama_2672	0.86	+2.2
3,198,508	+		Sama_2672	0.88	+2.9
3,198,508	+		Sama_2672	0.88	+3.7
3,198,509	-		Sama_2672	0.88	+2.8
3,198,552	+				+1.6
3,198,560	+				+3.3
3,198,591	+				+1.7
3,198,610	-				+1.2
3,198,637	-				+1.7
3,198,637	-				-1.7
3,198,637	-				+2.0
3,198,637	-				+2.3
3,198,639	-				-0.9
3,198,667	+				+1.8
3,198,737	-				-1.4
3,198,737	-				-0.7
3,198,737	-				-0.1
3,198,737	-				-0.7
3,198,744	+				+0.7
3,198,745	-				+1.7
3,198,745	-				-0.2
3,198,745	-				+0.8
3,198,745	-				-0.9
3,198,745	-				-0.8
3,198,766	+				-1.2
3,198,767	-				-0.9
3,198,786	-				-1.8
3,198,791	-				-0.9
3,198,800	+				+1.5
3,198,801	-				-0.1
3,198,803	+				+4.1
3,198,803	+				+0.2
3,198,804	-				-1.3
3,198,805	+				-2.5
3,198,805	+				+2.0
3,198,805	+				+3.0
3,198,826	+				-1.8
3,198,896	+				+1.5
3,199,232	+		Sama_2673	0.47	-1.5
3,199,282	+		Sama_2673	0.54	-0.7
3,199,282	+		Sama_2673	0.54	+1.6
3,199,326	+		Sama_2673	0.61	-1.3
3,199,448	+		Sama_2673	0.79	+1.7
3,199,509	+		Sama_2673	0.88	+1.2