Strain Fitness in Shewanella amazonensis SB2B around Sama_2660

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,182,606	+				-0.7
3,182,606	+				-0.8
3,182,607	-				+0.1
3,182,607	-				+1.1
3,182,607	-				+0.2
3,182,646	+				+0.9
3,182,646	+				+0.6
3,182,647	-				-1.7
3,182,647	-				+0.1
3,182,699	-				-2.4
3,182,699	-				+0.6
3,182,768	-				+0.3
3,182,773	-				+0.1
3,182,783	+				-0.6
3,182,783	+				-0.8
3,182,783	+				-0.7
3,182,794	+				-0.1
3,182,795	-				-2.8
3,182,835	-				-1.1
3,182,840	+				-1.3
3,182,841	-				-1.5
3,182,858	+				-0.4
3,182,859	-				+1.0
3,182,868	+				-3.4
3,182,868	+				+1.0
3,182,868	+				-0.1
3,182,868	+				+0.5
3,182,868	+				-0.7
3,182,868	+				+2.4
3,182,868	+				-1.4
3,182,869	-				+2.2
3,182,869	-				+0.6
3,182,869	-				-2.6
3,182,869	-				-2.8
3,182,869	-				+1.1
3,182,869	-				+0.4
3,182,869	-				+0.7
3,182,869	-				+1.4
3,182,869	-				-0.9
3,182,869	-				-0.4
3,182,869	-				+3.1
3,182,869	-				-0.6
3,182,869	-				-0.7
3,182,869	-				-2.1
3,182,869	-				-2.2
3,182,869	-				-0.8
3,182,869	-				+0.6
3,182,870	+				+1.2
3,182,870	+				-0.3
3,182,870	+				-1.6
3,182,870	+				-2.1
3,182,870	+				+0.1
3,182,870	+				-2.1
3,182,870	+				-0.4
3,182,870	+				+0.9
3,182,870	+				+1.6
3,182,870	+				-0.3
3,182,871	-				-0.1
3,182,871	-				+1.9
3,182,871	-				+1.2
3,182,871	-				-0.6
3,182,871	-				-1.7
3,182,871	-				+1.3
3,182,871	-				-1.2
3,182,880	+				+1.9
3,182,881	-				+1.6
3,182,896	-				-0.4
3,182,903	-				+0.5
3,182,943	-				-2.1
3,182,955	+				+2.3
3,182,955	+				+2.1
3,182,955	+				-0.8
3,182,955	+				-1.5
3,182,955	+				-0.9
3,182,956	-				+1.5
3,182,956	-				-0.7
3,182,956	-				-1.2
3,182,956	-				-0.7
3,182,956	-				+0.1
3,182,956	-				-0.4
3,182,974	+		Sama_2659	0.13	-0.9
3,182,974	+		Sama_2659	0.13	+1.0
3,182,975	-		Sama_2659	0.13	-1.5
3,182,989	-		Sama_2659	0.16	+0.3
3,183,084	-		Sama_2659	0.33	-1.7
3,183,097	+		Sama_2659	0.35	-0.4
3,183,098	-		Sama_2659	0.35	-0.1
3,183,098	-		Sama_2659	0.35	+1.5
3,183,098	-		Sama_2659	0.35	+1.2
3,183,182	-		Sama_2659	0.50	+0.7
3,183,237	-		Sama_2659	0.60	+1.2
3,183,267	+		Sama_2659	0.65	-2.3
3,183,267	+		Sama_2659	0.65	+0.6
3,183,267	+		Sama_2659	0.65	-1.1
3,183,268	-		Sama_2659	0.65	-1.4
3,183,268	-		Sama_2659	0.65	+1.9
3,183,268	-		Sama_2659	0.65	+1.9
3,183,277	+		Sama_2659	0.67	+1.6
3,183,278	-		Sama_2659	0.67	-0.5
3,183,278	-		Sama_2659	0.67	+0.3
3,183,278	-		Sama_2659	0.67	+0.5
3,183,278	-		Sama_2659	0.67	+1.5
3,183,278	-		Sama_2659	0.67	-1.9
3,183,278	-		Sama_2659	0.67	-1.2
3,183,279	+		Sama_2659	0.67	+0.6
3,183,279	+		Sama_2659	0.67	-0.4
3,183,279	+		Sama_2659	0.67	-1.7
3,183,279	+		Sama_2659	0.67	-0.9
3,183,280	-		Sama_2659	0.68	-3.2
3,183,280	-		Sama_2659	0.68	+0.1
3,183,280	-		Sama_2659	0.68	+0.9
3,183,280	-		Sama_2659	0.68	+1.0
3,183,280	-		Sama_2659	0.68	-2.8
3,183,280	-		Sama_2659	0.68	-1.1
3,183,280	-		Sama_2659	0.68	+1.8
3,183,280	-		Sama_2659	0.68	-0.1
3,183,280	-		Sama_2659	0.68	+2.3
3,183,280	-		Sama_2659	0.68	+0.9
3,183,280	-		Sama_2659	0.68	+2.1
3,183,280	-		Sama_2659	0.68	+1.5
3,183,280	-		Sama_2659	0.68	+1.1
3,183,280	-		Sama_2659	0.68	+0.0
3,183,280	-		Sama_2659	0.68	-1.2
3,183,280	-		Sama_2659	0.68	-0.4
3,183,280	-		Sama_2659	0.68	+0.0
3,183,280	-		Sama_2659	0.68	+1.1
3,183,284	+		Sama_2659	0.68	+1.6
3,183,284	+		Sama_2659	0.68	+0.2
3,183,285	-		Sama_2659	0.68	+0.6
3,183,289	-		Sama_2659	0.69	+0.3
3,183,289	-		Sama_2659	0.69	-0.4
3,183,289	-		Sama_2659	0.69	+0.8
3,183,321	+		Sama_2659	0.75	-0.3
3,183,321	+		Sama_2659	0.75	-0.5
3,183,321	+		Sama_2659	0.75	-0.5
3,183,322	-		Sama_2659	0.75	-2.1
3,183,322	-		Sama_2659	0.75	+1.8
3,183,322	-		Sama_2659	0.75	+1.5
3,183,322	-		Sama_2659	0.75	-0.9
3,183,322	-		Sama_2659	0.75	+2.3
3,183,322	-		Sama_2659	0.75	+1.4
3,183,322	-		Sama_2659	0.75	-1.4
3,183,322	-		Sama_2659	0.75	-0.6
3,183,380	+		Sama_2659	0.85	-1.5
3,183,401	+		Sama_2659	0.89	-1.8
3,183,402	-		Sama_2659	0.89	-1.9
3,183,402	-		Sama_2659	0.89	+0.1
3,183,402	-		Sama_2659	0.89	+0.7
3,183,402	-		Sama_2659	0.89	+0.3
3,183,402	-		Sama_2659	0.89	-0.3
3,183,452	+				-2.2
3,183,452	+				-0.4
3,183,453	-				+0.5
3,183,453	-				-0.7
3,183,514	+				+0.4
3,183,514	+				+0.7
3,183,514	+				+1.0
3,183,514	+				-1.5
3,183,514	+				+0.8
3,183,514	+				+1.0
3,183,514	+				-0.4
3,183,515	-				+2.6
3,183,515	-				-1.3
3,183,515	-				+1.0
3,183,515	-				+0.9
3,183,515	-				-0.6
3,183,515	-				+0.7
3,183,515	-				+0.1
3,183,515	-				+0.1
3,183,515	-				-2.3
3,183,568	+				-0.4
3,183,568	+				+0.8
3,183,568	+				+0.1
3,183,569	-				+1.1
3,183,569	-				+0.2
3,183,569	-				-2.4
3,183,569	-				+0.5
3,183,570	+				+1.0
3,183,570	+				+1.1
3,183,570	+				-0.9
3,183,570	+				-1.5
3,183,570	+				+0.5
3,183,571	-				-1.2
3,183,571	-				-0.5
3,183,571	-				-1.8
3,183,571	-				-2.1
3,183,571	-				+0.1
3,183,571	-				-1.3
3,183,571	-				+0.2
3,183,605	-				-0.4
3,183,653	+				+0.3
3,183,656	+				-0.6
3,183,657	-				+1.8
3,183,657	-				-1.6
3,183,804	+		Sama_2660	0.18	+2.5
3,183,804	+		Sama_2660	0.18	+0.1
3,183,804	+		Sama_2660	0.18	-1.2
3,183,804	+		Sama_2660	0.18	+0.1
3,183,804	+		Sama_2660	0.18	-0.4
3,183,804	+		Sama_2660	0.18	+0.8
3,183,804	+		Sama_2660	0.18	-0.9
3,183,804	+		Sama_2660	0.18	-1.1
3,183,805	-		Sama_2660	0.18	+0.4
3,183,805	-		Sama_2660	0.18	-2.2
3,183,807	+		Sama_2660	0.18	+1.9
3,183,808	-		Sama_2660	0.18	-2.5
3,183,808	-		Sama_2660	0.18	-0.1
3,183,871	+		Sama_2660	0.24	+1.9
3,183,871	+		Sama_2660	0.24	+0.2
3,183,872	-		Sama_2660	0.24	+1.5
3,183,895	-		Sama_2660	0.26	-2.5
3,183,912	+		Sama_2660	0.27	+0.1
3,184,051	+		Sama_2660	0.40	-1.5
3,184,052	-		Sama_2660	0.40	-0.9
3,184,293	+		Sama_2660	0.61	+0.4
3,184,293	+		Sama_2660	0.61	+1.2
3,184,293	+		Sama_2660	0.61	-0.8
3,184,294	-		Sama_2660	0.61	+0.9
3,184,294	-		Sama_2660	0.61	+0.1
3,184,294	-		Sama_2660	0.61	-2.4
3,184,294	-		Sama_2660	0.61	+0.4
3,184,294	-		Sama_2660	0.61	-0.6
3,184,300	-		Sama_2660	0.62	-0.9
3,184,300	-		Sama_2660	0.62	-1.3
3,184,313	-		Sama_2660	0.63	-2.5
3,184,369	+		Sama_2660	0.68	-2.2
3,184,369	+		Sama_2660	0.68	-2.4
3,184,370	-		Sama_2660	0.68	-0.4
3,184,370	-		Sama_2660	0.68	-1.2
3,184,370	-		Sama_2660	0.68	+1.6
3,184,394	+		Sama_2660	0.70	-1.5
3,184,394	+		Sama_2660	0.70	-1.0
3,184,394	+		Sama_2660	0.70	-0.3
3,184,394	+		Sama_2660	0.70	-0.2
3,184,394	+		Sama_2660	0.70	+0.1
3,184,394	+		Sama_2660	0.70	-0.4
3,184,394	+		Sama_2660	0.70	-1.3
3,184,394	+		Sama_2660	0.70	+1.6
3,184,394	+		Sama_2660	0.70	-0.4
3,184,394	+		Sama_2660	0.70	+1.6
3,184,394	+		Sama_2660	0.70	-1.9
3,184,395	-		Sama_2660	0.70	-1.4
3,184,395	-		Sama_2660	0.70	+0.8
3,184,395	-		Sama_2660	0.70	+0.4
3,184,395	-		Sama_2660	0.70	-0.2
3,184,395	-		Sama_2660	0.70	-1.8
3,184,395	-		Sama_2660	0.70	-1.4
3,184,395	-		Sama_2660	0.70	-0.1
3,184,395	-		Sama_2660	0.70	+2.2
3,184,395	-		Sama_2660	0.70	-1.4
3,184,396	+		Sama_2660	0.70	-0.7
3,184,396	+		Sama_2660	0.70	+1.2
3,184,396	+		Sama_2660	0.70	-0.5
3,184,396	+		Sama_2660	0.70	-2.3
3,184,396	+		Sama_2660	0.70	-0.0
3,184,396	+		Sama_2660	0.70	-0.9
3,184,396	+		Sama_2660	0.70	-0.9
3,184,397	-		Sama_2660	0.71	-1.3
3,184,397	-		Sama_2660	0.71	-0.9
3,184,397	-		Sama_2660	0.71	+1.9
3,184,397	-		Sama_2660	0.71	-0.7
3,184,428	+		Sama_2660	0.73	-2.2
3,184,429	-		Sama_2660	0.73	+0.4
3,184,530	+		Sama_2660	0.82	+1.6
3,184,530	+		Sama_2660	0.82	-2.9
3,184,530	+		Sama_2660	0.82	-1.2
3,184,530	+		Sama_2660	0.82	+1.6
3,184,530	+		Sama_2660	0.82	+1.2
3,184,530	+		Sama_2660	0.82	-0.5
3,184,530	+		Sama_2660	0.82	-0.2
3,184,530	+		Sama_2660	0.82	-0.4
3,184,530	+		Sama_2660	0.82	+2.1
3,184,530	+		Sama_2660	0.82	-0.9
3,184,531	-		Sama_2660	0.83	-0.9
3,184,531	-		Sama_2660	0.83	+0.1
3,184,531	-		Sama_2660	0.83	+0.4
3,184,531	-		Sama_2660	0.83	-0.4
3,184,531	-		Sama_2660	0.83	-1.5
3,184,531	-		Sama_2660	0.83	+0.6
3,184,531	-		Sama_2660	0.83	+0.8
3,184,531	-		Sama_2660	0.83	-0.7
3,184,531	-		Sama_2660	0.83	-0.3
3,184,531	-		Sama_2660	0.83	-1.8
3,184,535	+		Sama_2660	0.83	+0.5
3,184,535	+		Sama_2660	0.83	-0.2
3,184,535	+		Sama_2660	0.83	+0.5
3,184,535	+		Sama_2660	0.83	+1.3
3,184,536	-		Sama_2660	0.83	+0.2
3,184,536	-		Sama_2660	0.83	+0.9
3,184,536	-		Sama_2660	0.83	-1.1
3,184,536	-		Sama_2660	0.83	-0.9
3,184,536	-		Sama_2660	0.83	+0.3
3,184,590	-		Sama_2660	0.88	+0.4
3,184,610	+		Sama_2660	0.90	-0.2
3,184,610	+		Sama_2660	0.90	-1.3
3,184,610	+		Sama_2660	0.90	+0.4
3,184,610	+		Sama_2660	0.90	+0.4
3,184,610	+		Sama_2660	0.90	-0.0
3,184,611	-		Sama_2660	0.90	-0.6
3,184,611	-		Sama_2660	0.90	+1.1
3,184,611	-		Sama_2660	0.90	+1.0
3,184,614	+				-0.7
3,184,614	+				+0.6
3,184,614	+				-1.0
3,184,614	+				-1.7
3,184,614	+				-0.9
3,184,615	-				-0.5
3,184,615	-				-1.2
3,184,615	-				-0.8
3,184,615	-				+2.7
3,184,618	+				+1.0
3,184,618	+				+0.1
3,184,619	-				+0.6
3,184,619	-				-1.5
3,184,619	-				+4.3
3,184,619	-				+0.6
3,184,619	-				-2.7
3,184,619	-				-0.8
3,184,643	+				-2.3
3,184,644	-				+0.3
3,184,644	-				+0.6
3,184,728	+				-1.0
3,184,729	-				-0.4
3,184,729	-				-2.4
3,184,729	-				-0.7
3,184,729	-				+3.5
3,184,729	-				-0.4
3,184,729	-				-0.9
3,184,743	+				+3.0
3,184,747	-				-0.5
3,184,747	-				-1.8
3,184,803	+				+3.9
3,184,803	+				-0.1
3,184,803	+				-1.0
3,184,803	+				+0.9
3,184,809	-				+0.5
3,184,835	-				+0.3
3,184,835	-				+0.7
3,184,876	+		Sama_2661	0.11	-0.6
3,184,877	-		Sama_2661	0.11	+0.1
3,184,877	-		Sama_2661	0.11	-0.7
3,184,919	+		Sama_2661	0.13	+0.7
3,184,920	-		Sama_2661	0.14	-0.7
3,184,920	-		Sama_2661	0.14	-1.0
3,184,920	-		Sama_2661	0.14	-0.7
3,184,920	-		Sama_2661	0.14	-1.0
3,185,020	-		Sama_2661	0.20	+0.9
3,185,020	-		Sama_2661	0.20	-1.2
3,185,039	+		Sama_2661	0.22	+1.0
3,185,039	+		Sama_2661	0.22	-1.0
3,185,039	+		Sama_2661	0.22	+1.5
3,185,039	+		Sama_2661	0.22	-2.4
3,185,045	+		Sama_2661	0.22	+2.2
3,185,045	+		Sama_2661	0.22	-0.2
3,185,045	+		Sama_2661	0.22	-0.5
3,185,045	+		Sama_2661	0.22	+1.5
3,185,045	+		Sama_2661	0.22	-0.7
3,185,045	+		Sama_2661	0.22	-2.5
3,185,045	+		Sama_2661	0.22	-3.1
3,185,045	+		Sama_2661	0.22	+1.1
3,185,045	+		Sama_2661	0.22	+1.8
3,185,045	+		Sama_2661	0.22	-0.6
3,185,046	-		Sama_2661	0.22	+1.3
3,185,046	-		Sama_2661	0.22	+0.1
3,185,046	-		Sama_2661	0.22	-0.0
3,185,046	-		Sama_2661	0.22	-0.8
3,185,046	-		Sama_2661	0.22	+1.7
3,185,046	-		Sama_2661	0.22	-1.3
3,185,046	-		Sama_2661	0.22	-0.7
3,185,046	-		Sama_2661	0.22	-0.7
3,185,046	-		Sama_2661	0.22	-0.3
3,185,046	-		Sama_2661	0.22	+0.2
3,185,046	-		Sama_2661	0.22	-0.0
3,185,046	-		Sama_2661	0.22	+1.5
3,185,046	-		Sama_2661	0.22	+0.9
3,185,046	-		Sama_2661	0.22	-2.5
3,185,046	-		Sama_2661	0.22	-1.8
3,185,046	-		Sama_2661	0.22	-1.7
3,185,046	-		Sama_2661	0.22	-0.3
3,185,046	-		Sama_2661	0.22	-0.7
3,185,046	-		Sama_2661	0.22	+0.6
3,185,046	-		Sama_2661	0.22	-1.4
3,185,046	-		Sama_2661	0.22	-0.1
3,185,046	-		Sama_2661	0.22	-0.4
3,185,049	+		Sama_2661	0.22	-0.7
3,185,049	+		Sama_2661	0.22	+0.2
3,185,049	+		Sama_2661	0.22	-1.5
3,185,049	+		Sama_2661	0.22	-0.4
3,185,050	-		Sama_2661	0.22	+0.9
3,185,050	-		Sama_2661	0.22	+0.4
3,185,050	-		Sama_2661	0.22	-1.5
3,185,132	+		Sama_2661	0.28	-1.2
3,185,142	+		Sama_2661	0.29	-0.4
3,185,143	-		Sama_2661	0.29	-0.1
3,185,185	+		Sama_2661	0.32	+1.6
3,185,185	+		Sama_2661	0.32	-1.8
3,185,185	+		Sama_2661	0.32	-0.2
3,185,198	+		Sama_2661	0.33	-0.2
3,185,199	-		Sama_2661	0.33	+2.5
3,185,209	-		Sama_2661	0.33	+2.3
3,185,226	-		Sama_2661	0.35	-0.9
3,185,331	+		Sama_2661	0.42	-1.2
3,185,331	+		Sama_2661	0.42	+0.3
3,185,331	+		Sama_2661	0.42	+1.2
3,185,331	+		Sama_2661	0.42	+0.0
3,185,332	-		Sama_2661	0.42	-2.6
3,185,332	-		Sama_2661	0.42	-1.6
3,185,332	-		Sama_2661	0.42	-0.4
3,185,332	-		Sama_2661	0.42	+1.5
3,185,332	-		Sama_2661	0.42	-0.8
3,185,332	-		Sama_2661	0.42	-1.7
3,185,332	-		Sama_2661	0.42	+1.4
3,185,332	-		Sama_2661	0.42	-0.1
3,185,332	-		Sama_2661	0.42	-0.4
3,185,332	-		Sama_2661	0.42	-0.4
3,185,332	-		Sama_2661	0.42	-0.2
3,185,332	-		Sama_2661	0.42	-1.1
3,185,332	-		Sama_2661	0.42	+2.0
3,185,332	-		Sama_2661	0.42	-1.2
3,185,332	-		Sama_2661	0.42	-0.5
3,185,333	+		Sama_2661	0.42	+1.4
3,185,333	+		Sama_2661	0.42	-0.9
3,185,333	+		Sama_2661	0.42	+1.7
3,185,334	-		Sama_2661	0.42	-1.3
3,185,334	-		Sama_2661	0.42	-1.0
3,185,334	-		Sama_2661	0.42	-1.8
3,185,344	-		Sama_2661	0.43	-1.7
3,185,462	+		Sama_2661	0.51	-0.4
3,185,462	+		Sama_2661	0.51	+1.2
3,185,462	+		Sama_2661	0.51	+0.8
3,185,462	+		Sama_2661	0.51	-1.4
3,185,463	-		Sama_2661	0.51	+0.6
3,185,463	-		Sama_2661	0.51	+0.6
3,185,463	-		Sama_2661	0.51	-0.5
3,185,463	-		Sama_2661	0.51	-0.9
3,185,463	-		Sama_2661	0.51	-2.4
3,185,463	-		Sama_2661	0.51	-0.7
3,185,516	-		Sama_2661	0.55	-1.8
3,185,516	-		Sama_2661	0.55	+0.8
3,185,578	-		Sama_2661	0.59	+1.4
3,185,583	-		Sama_2661	0.59	+0.7
3,185,583	-		Sama_2661	0.59	-1.5
3,185,583	-		Sama_2661	0.59	-0.8
3,185,612	-		Sama_2661	0.61	+1.9
3,185,710	+		Sama_2661	0.68	+1.6
3,185,710	+		Sama_2661	0.68	+0.6
3,185,711	-		Sama_2661	0.68	+0.2
3,185,711	-		Sama_2661	0.68	-1.4
3,185,711	-		Sama_2661	0.68	-0.4