Strain Fitness in Shewanella amazonensis SB2B around Sama_2614

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,128,854	+				+1.1
3,128,854	+				+1.4
3,128,854	+				+0.5
3,128,855	-				-2.2
3,128,859	+				+3.1
3,128,960	+		Sama_2613	0.11	+2.1
3,128,961	-		Sama_2613	0.11	+3.6
3,128,996	+		Sama_2613	0.15	+2.4
3,128,996	+		Sama_2613	0.15	+2.0
3,129,108	+		Sama_2613	0.27	+2.9
3,129,115	+		Sama_2613	0.27	+3.1
3,129,126	+		Sama_2613	0.29	+2.0
3,129,171	+		Sama_2613	0.33	-0.8
3,129,171	+		Sama_2613	0.33	-0.5
3,129,171	+		Sama_2613	0.33	+3.8
3,129,171	+		Sama_2613	0.33	+2.5
3,129,171	+		Sama_2613	0.33	+2.0
3,129,171	+		Sama_2613	0.33	+1.0
3,129,202	+		Sama_2613	0.37	+2.6
3,129,230	+		Sama_2613	0.40	+0.6
3,129,400	+		Sama_2613	0.58	+0.9
3,129,400	+		Sama_2613	0.58	+3.0
3,129,420	+		Sama_2613	0.60	+1.4
3,129,428	+		Sama_2613	0.61	+1.9
3,129,428	+		Sama_2613	0.61	+1.4
3,129,428	+		Sama_2613	0.61	+1.6
3,129,428	+		Sama_2613	0.61	+2.9
3,129,474	+		Sama_2613	0.66	-0.3
3,129,511	+		Sama_2613	0.70	+2.7
3,129,511	+		Sama_2613	0.70	+1.1
3,129,512	-		Sama_2613	0.70	-0.7
3,129,513	+		Sama_2613	0.70	+2.3
3,129,513	+		Sama_2613	0.70	+1.6
3,129,513	+		Sama_2613	0.70	+1.9
3,129,633	+		Sama_2613	0.83	+2.7
3,129,697	+				+0.7
3,129,697	+				+3.6
3,129,787	+				-0.4
3,129,802	+				-0.7
3,129,834	+				-1.7
3,129,845	-				-2.3
3,129,924	+		Sama_2614	0.12	+0.0
3,129,925	-		Sama_2614	0.12	-1.7
3,129,991	+		Sama_2614	0.21	+1.4
3,129,991	+		Sama_2614	0.21	-1.4
3,129,991	+		Sama_2614	0.21	+0.8
3,129,992	-		Sama_2614	0.22	-0.4
3,129,992	-		Sama_2614	0.22	+0.8
3,129,992	-		Sama_2614	0.22	+1.6
3,129,992	-		Sama_2614	0.22	-1.3
3,129,992	-		Sama_2614	0.22	+0.8
3,129,992	-		Sama_2614	0.22	+0.2
3,129,992	-		Sama_2614	0.22	-1.8
3,129,992	-		Sama_2614	0.22	+0.8
3,129,995	+		Sama_2614	0.22	+0.4
3,129,996	-		Sama_2614	0.22	-1.2
3,130,078	-		Sama_2614	0.34	-0.7
3,130,205	+		Sama_2614	0.52	-0.9
3,130,223	+		Sama_2614	0.55	+0.2
3,130,223	+		Sama_2614	0.55	+1.4
3,130,224	-		Sama_2614	0.55	+2.3
3,130,224	-		Sama_2614	0.55	-2.1
3,130,224	-		Sama_2614	0.55	-0.8
3,130,224	-		Sama_2614	0.55	-2.1
3,130,224	-		Sama_2614	0.55	-0.5
3,130,226	+		Sama_2614	0.55	-1.8
3,130,226	+		Sama_2614	0.55	-1.0
3,130,226	+		Sama_2614	0.55	-1.4
3,130,227	-		Sama_2614	0.55	-0.5
3,130,227	-		Sama_2614	0.55	+0.3
3,130,254	+		Sama_2614	0.59	-0.7
3,130,254	+		Sama_2614	0.59	-2.7
3,130,254	+		Sama_2614	0.59	-1.0
3,130,300	+		Sama_2614	0.66	-0.1
3,130,303	+		Sama_2614	0.66	-2.6
3,130,303	+		Sama_2614	0.66	-0.2
3,130,303	+		Sama_2614	0.66	+1.0
3,130,303	+		Sama_2614	0.66	+0.7
3,130,304	-		Sama_2614	0.67	+0.9
3,130,304	-		Sama_2614	0.67	-1.6
3,130,304	-		Sama_2614	0.67	-1.2
3,130,325	+		Sama_2614	0.70	+2.5
3,130,326	-		Sama_2614	0.70	-1.7
3,130,326	-		Sama_2614	0.70	+2.3
3,130,326	-		Sama_2614	0.70	+0.8
3,130,326	-		Sama_2614	0.70	-2.1
3,130,326	-		Sama_2614	0.70	+1.7
3,130,329	-		Sama_2614	0.70	-1.2
3,130,355	-		Sama_2614	0.74	+0.2
3,130,436	+		Sama_2614	0.86	-0.8
3,130,466	+				-1.1
3,130,524	-				-1.3
3,130,539	-				-1.5
3,130,571	-				+0.8
3,130,571	-				-0.2
3,130,571	-				+0.7
3,130,584	+				-0.6
3,130,585	-				+0.2
3,130,585	-				-0.2
3,130,612	+				+1.0
3,130,613	-				+0.4
3,130,613	-				-2.0
3,130,613	-				+0.0
3,130,613	-				+0.6
3,130,651	-				+1.4
3,130,670	-				+1.0
3,130,696	+				+1.9
3,130,696	+				+1.6
3,130,731	-				-1.8
3,130,774	+				-1.4
3,130,910	+				-3.0
3,130,911	-				+0.5
3,130,911	-				-1.2
3,130,965	+				+0.0
3,130,965	+				-1.6
3,130,965	+				-2.6
3,130,966	-				-0.5
3,130,966	-				+0.3
3,130,969	+				-0.3
3,130,969	+				-1.0
3,130,969	+				+0.0
3,130,969	+				-0.8
3,130,970	-				-0.8
3,130,970	-				+0.8
3,130,970	-				+2.0
3,131,018	+		Sama_2615	0.12	+0.4
3,131,032	-		Sama_2615	0.13	+0.5
3,131,062	+		Sama_2615	0.14	+0.4
3,131,062	+		Sama_2615	0.14	-0.3
3,131,062	+		Sama_2615	0.14	-0.2
3,131,063	-		Sama_2615	0.14	-4.3
3,131,063	-		Sama_2615	0.14	-0.7
3,131,172	-		Sama_2615	0.20	-2.1
3,131,172	-		Sama_2615	0.20	-2.3
3,131,172	-		Sama_2615	0.20	+0.7
3,131,181	-		Sama_2615	0.20	-0.6
3,131,183	+		Sama_2615	0.20	+1.3
3,131,295	+		Sama_2615	0.25	-2.1
3,131,295	+		Sama_2615	0.25	+0.6
3,131,295	+		Sama_2615	0.25	+1.5
3,131,296	-		Sama_2615	0.25	+0.0
3,131,296	-		Sama_2615	0.25	-2.1
3,131,328	+		Sama_2615	0.27	+0.1
3,131,349	+		Sama_2615	0.28	-1.7
3,131,349	+		Sama_2615	0.28	+3.2
3,131,350	-		Sama_2615	0.28	-0.7
3,131,376	+		Sama_2615	0.29	+0.0
3,131,377	-		Sama_2615	0.29	-1.8
3,131,379	+		Sama_2615	0.29	-0.8
3,131,379	+		Sama_2615	0.29	-1.0
3,131,379	+		Sama_2615	0.29	-1.4
3,131,379	+		Sama_2615	0.29	+0.0
3,131,379	+		Sama_2615	0.29	+0.2
3,131,380	-		Sama_2615	0.30	-0.3
3,131,380	-		Sama_2615	0.30	+1.5
3,131,445	+		Sama_2615	0.33	+1.1
3,131,445	+		Sama_2615	0.33	-1.4
3,131,445	+		Sama_2615	0.33	-1.5
3,131,445	+		Sama_2615	0.33	-2.5
3,131,445	+		Sama_2615	0.33	-0.8
3,131,446	-		Sama_2615	0.33	-0.6
3,131,446	-		Sama_2615	0.33	+0.3
3,131,446	-		Sama_2615	0.33	-0.8