Strain Fitness in Shewanella amazonensis SB2B around Sama_2607

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,120,259	+				-2.6
3,120,279	+				+3.1
3,120,292	+				-0.5
3,120,292	+				-1.2
3,120,293	-				+1.0
3,120,320	-				+0.0
3,120,358	+				+1.7
3,120,358	+				+0.5
3,120,359	-				-0.4
3,120,359	-				-1.0
3,120,381	-				+1.3
3,120,381	-				+1.8
3,120,381	-				+1.5
3,120,382	+				+0.9
3,120,382	+				-1.6
3,120,383	-				+0.9
3,120,406	+				-0.0
3,120,406	+				-1.1
3,120,407	-				+1.1
3,120,407	-				+0.2
3,120,407	-				+1.1
3,120,427	+				+0.3
3,120,428	-				-1.5
3,120,428	-				-0.8
3,120,790	+				-0.7
3,120,790	+				+2.1
3,120,790	+				+0.2
3,120,790	+				+0.0
3,120,790	+				+0.4
3,120,790	+				-2.5
3,120,790	+				+1.8
3,120,794	+				-2.0
3,120,794	+				-1.4
3,120,794	+				-0.1
3,120,794	+				-0.1
3,120,794	+				+0.0
3,120,794	+				+0.7
3,120,800	+				-0.7
3,120,800	+				-1.4
3,120,905	+				+1.9
3,120,905	+				-0.4
3,120,921	+				-2.7
3,120,927	+				+1.5
3,120,927	+				-2.0
3,120,927	+				+0.1
3,120,983	+		Sama_R0116	0.57	+0.6
3,120,983	+		Sama_R0116	0.57	+2.1
3,121,015	+				+0.4
3,121,026	+				-1.0
3,121,026	+				-0.5
3,121,026	+				-1.4
3,121,059	+				+2.0
3,121,059	+				-0.7
3,121,060	-				-2.2
3,121,060	-				-1.6
3,121,062	+				-0.6
3,121,091	+				-0.2
3,121,091	+				-0.4
3,121,092	-				-0.9
3,121,093	+				+0.9
3,121,093	+				+3.4
3,121,093	+				+1.4
3,121,093	+				+1.3
3,121,094	-				-1.6
3,121,094	-				+1.0
3,121,094	-				+0.7
3,121,097	+				+0.3
3,121,097	+				-0.7
3,121,097	+				-0.6
3,121,097	+				+0.4
3,121,097	+				+1.8
3,121,097	+				+0.1
3,121,097	+				-2.0
3,121,097	+				+1.4
3,121,097	+				-0.5
3,121,097	+				-2.1
3,121,097	+				-0.2
3,121,097	+				-0.7
3,121,097	+				-2.0
3,121,098	-				-0.8
3,121,098	-				+0.5
3,121,098	-				-2.1
3,121,098	-				-2.9
3,121,098	-				+0.9
3,121,098	-				+0.0
3,121,098	-				+1.7
3,121,098	-				-0.7
3,121,099	+				+0.9
3,121,099	+				-1.4
3,121,099	+				-0.2
3,121,099	+				-1.6
3,121,099	+				-0.4
3,121,099	+				+1.3
3,121,100	-				-0.5
3,121,100	-				+0.6
3,121,100	-				+0.0
3,121,100	-				+0.9
3,121,100	-				+1.0
3,121,100	-				-1.5
3,121,103	+				-0.3
3,121,103	+				+1.5
3,121,104	-				+0.8
3,121,104	-				+0.6
3,121,260	+				-1.2
3,121,260	+				+0.0
3,121,260	+				-1.2
3,121,261	-				-0.8
3,121,261	-				+0.0
3,121,261	-				-2.5
3,121,261	-				+0.0
3,121,274	+				+0.7
3,121,274	+				-1.8
3,121,274	+				-2.3
3,121,297	+				-0.4
3,121,298	-				+4.4
3,121,298	-				-0.3
3,121,298	-				+0.0
3,121,299	+				+1.8
3,121,335	+		Sama_2607	0.10	-1.2
3,121,377	+		Sama_2607	0.13	+1.6
3,121,377	+		Sama_2607	0.13	-0.1
3,121,378	-		Sama_2607	0.13	-2.1
3,121,378	-		Sama_2607	0.13	+0.2
3,121,427	+		Sama_2607	0.16	+0.8
3,121,428	-		Sama_2607	0.16	+1.4
3,121,428	-		Sama_2607	0.16	+0.3
3,121,434	+		Sama_2607	0.16	-2.0
3,121,435	-		Sama_2607	0.16	+0.8
3,121,435	-		Sama_2607	0.16	-0.2
3,121,443	+		Sama_2607	0.17	+1.4
3,121,445	+		Sama_2607	0.17	-0.3
3,121,445	+		Sama_2607	0.17	+0.7
3,121,446	-		Sama_2607	0.17	-2.3
3,121,446	-		Sama_2607	0.17	-1.8
3,121,465	+		Sama_2607	0.18	-1.0
3,121,465	+		Sama_2607	0.18	-1.7
3,121,465	+		Sama_2607	0.18	-0.7
3,121,465	+		Sama_2607	0.18	+0.2
3,121,465	+		Sama_2607	0.18	+0.2
3,121,465	+		Sama_2607	0.18	-1.8
3,121,465	+		Sama_2607	0.18	+3.2
3,121,465	+		Sama_2607	0.18	-0.5
3,121,465	+		Sama_2607	0.18	+1.3
3,121,465	+		Sama_2607	0.18	+0.0
3,121,465	+		Sama_2607	0.18	-1.2
3,121,465	+		Sama_2607	0.18	+1.6
3,121,465	+		Sama_2607	0.18	+2.3
3,121,465	+		Sama_2607	0.18	+1.4
3,121,465	+		Sama_2607	0.18	-0.2
3,121,465	+		Sama_2607	0.18	-0.1
3,121,465	+		Sama_2607	0.18	+0.3
3,121,465	+		Sama_2607	0.18	+0.7
3,121,465	+		Sama_2607	0.18	-1.6
3,121,465	+		Sama_2607	0.18	-1.0
3,121,466	-		Sama_2607	0.18	-0.7
3,121,466	-		Sama_2607	0.18	-0.6
3,121,466	-		Sama_2607	0.18	+0.5
3,121,466	-		Sama_2607	0.18	-0.4
3,121,466	-		Sama_2607	0.18	+1.7
3,121,466	-		Sama_2607	0.18	+0.6
3,121,466	-		Sama_2607	0.18	-0.2
3,121,466	-		Sama_2607	0.18	-0.7
3,121,466	-		Sama_2607	0.18	+1.0
3,121,466	-		Sama_2607	0.18	+0.4
3,121,466	-		Sama_2607	0.18	-3.1
3,121,466	-		Sama_2607	0.18	+0.3
3,121,466	-		Sama_2607	0.18	-0.6
3,121,466	-		Sama_2607	0.18	-0.4
3,121,466	-		Sama_2607	0.18	-0.4
3,121,466	-		Sama_2607	0.18	+0.0
3,121,466	-		Sama_2607	0.18	-0.6
3,121,466	-		Sama_2607	0.18	-0.5
3,121,466	-		Sama_2607	0.18	+1.8
3,121,466	-		Sama_2607	0.18	+1.9
3,121,466	-		Sama_2607	0.18	-2.0
3,121,467	+		Sama_2607	0.18	-2.3
3,121,467	+		Sama_2607	0.18	+0.0
3,121,467	+		Sama_2607	0.18	-0.1
3,121,467	+		Sama_2607	0.18	-0.5
3,121,467	+		Sama_2607	0.18	+0.0
3,121,467	+		Sama_2607	0.18	+1.2
3,121,467	+		Sama_2607	0.18	+0.2
3,121,467	+		Sama_2607	0.18	-1.7
3,121,467	+		Sama_2607	0.18	-1.2
3,121,467	+		Sama_2607	0.18	-0.6
3,121,467	+		Sama_2607	0.18	-0.6
3,121,467	+		Sama_2607	0.18	-2.6
3,121,467	+		Sama_2607	0.18	+2.2
3,121,467	+		Sama_2607	0.18	-3.3
3,121,467	+		Sama_2607	0.18	+0.6
3,121,467	+		Sama_2607	0.18	-0.7
3,121,467	+		Sama_2607	0.18	+0.4
3,121,467	+		Sama_2607	0.18	+0.0
3,121,467	+		Sama_2607	0.18	+0.6
3,121,467	+		Sama_2607	0.18	-1.4
3,121,467	+		Sama_2607	0.18	-1.0
3,121,467	+		Sama_2607	0.18	-1.8
3,121,467	+		Sama_2607	0.18	-2.2
3,121,468	-		Sama_2607	0.18	-2.0
3,121,468	-		Sama_2607	0.18	+0.6
3,121,468	-		Sama_2607	0.18	-1.0
3,121,468	-		Sama_2607	0.18	+0.0
3,121,468	-		Sama_2607	0.18	-1.4
3,121,468	-		Sama_2607	0.18	-0.7
3,121,468	-		Sama_2607	0.18	-0.7
3,121,468	-		Sama_2607	0.18	+2.0
3,121,468	-		Sama_2607	0.18	-1.3
3,121,468	-		Sama_2607	0.18	-0.4
3,121,468	-		Sama_2607	0.18	+0.5
3,121,468	-		Sama_2607	0.18	+1.7
3,121,468	-		Sama_2607	0.18	-2.8
3,121,468	-		Sama_2607	0.18	-0.1
3,121,468	-		Sama_2607	0.18	+0.9
3,121,523	+		Sama_2607	0.22	-0.8
3,121,523	+		Sama_2607	0.22	+0.6
3,121,524	-		Sama_2607	0.22	+0.8
3,121,524	-		Sama_2607	0.22	-1.4
3,121,524	-		Sama_2607	0.22	-0.5
3,121,553	+		Sama_2607	0.23	-0.1
3,121,554	-		Sama_2607	0.24	-0.7
3,121,554	-		Sama_2607	0.24	+1.9
3,121,554	-		Sama_2607	0.24	-0.4
3,121,611	+		Sama_2607	0.27	-1.1
3,121,611	+		Sama_2607	0.27	+0.1
3,121,612	-		Sama_2607	0.27	+0.5
3,121,631	+		Sama_2607	0.28	-2.1
3,121,632	-		Sama_2607	0.28	+0.2
3,121,632	-		Sama_2607	0.28	-0.6
3,121,634	+		Sama_2607	0.28	-1.3
3,121,634	+		Sama_2607	0.28	+1.8
3,121,634	+		Sama_2607	0.28	+0.2
3,121,634	+		Sama_2607	0.28	+1.6
3,121,634	+		Sama_2607	0.28	-1.8
3,121,634	+		Sama_2607	0.28	-0.6
3,121,634	+		Sama_2607	0.28	+1.0
3,121,634	+		Sama_2607	0.28	+2.4
3,121,635	-		Sama_2607	0.29	+0.2
3,121,635	-		Sama_2607	0.29	+0.7
3,121,635	-		Sama_2607	0.29	+0.6
3,121,635	-		Sama_2607	0.29	-1.4
3,121,635	-		Sama_2607	0.29	-0.4
3,121,635	-		Sama_2607	0.29	-2.3
3,121,635	-		Sama_2607	0.29	+1.9
3,121,635	-		Sama_2607	0.29	-0.0
3,121,635	-		Sama_2607	0.29	+1.6
3,121,709	+		Sama_2607	0.33	-1.9
3,121,718	+		Sama_2607	0.34	-1.6
3,121,719	-		Sama_2607	0.34	+0.0
3,121,808	+		Sama_2607	0.39	+0.9
3,121,808	+		Sama_2607	0.39	-0.1
3,121,808	+		Sama_2607	0.39	-0.3
3,121,881	+		Sama_2607	0.44	-1.0
3,121,882	-		Sama_2607	0.44	-0.9
3,121,958	+		Sama_2607	0.48	-0.1
3,121,959	-		Sama_2607	0.48	+1.0
3,121,959	-		Sama_2607	0.48	+0.6
3,122,186	+		Sama_2607	0.62	+0.8
3,122,186	+		Sama_2607	0.62	-1.8
3,122,186	+		Sama_2607	0.62	+0.6
3,122,186	+		Sama_2607	0.62	-3.8
3,122,186	+		Sama_2607	0.62	-1.0
3,122,186	+		Sama_2607	0.62	+1.3
3,122,186	+		Sama_2607	0.62	-0.1
3,122,186	+		Sama_2607	0.62	+0.7
3,122,186	+		Sama_2607	0.62	-2.6
3,122,186	+		Sama_2607	0.62	+0.3
3,122,186	+		Sama_2607	0.62	+0.3
3,122,187	-		Sama_2607	0.62	-0.7
3,122,187	-		Sama_2607	0.62	+2.2
3,122,187	-		Sama_2607	0.62	+0.8
3,122,189	+		Sama_2607	0.63	-2.5
3,122,189	+		Sama_2607	0.63	+1.2
3,122,190	-		Sama_2607	0.63	-0.7
3,122,190	-		Sama_2607	0.63	-0.8
3,122,190	-		Sama_2607	0.63	-1.1
3,122,190	-		Sama_2607	0.63	-0.4
3,122,253	-		Sama_2607	0.67	-1.4
3,122,300	+		Sama_2607	0.69	-0.7
3,122,300	+		Sama_2607	0.69	-0.4
3,122,300	+		Sama_2607	0.69	+1.0
3,122,301	-		Sama_2607	0.69	+1.2
3,122,301	-		Sama_2607	0.69	+0.9
3,122,301	-		Sama_2607	0.69	+2.9
3,122,301	-		Sama_2607	0.69	-3.3
3,122,301	-		Sama_2607	0.69	+1.8
3,122,304	+		Sama_2607	0.70	-2.2
3,122,304	+		Sama_2607	0.70	+0.4
3,122,304	+		Sama_2607	0.70	-1.3
3,122,305	-		Sama_2607	0.70	-0.4
3,122,305	-		Sama_2607	0.70	-1.8
3,122,305	-		Sama_2607	0.70	-1.8
3,122,427	+		Sama_2607	0.77	+0.1
3,122,428	-		Sama_2607	0.77	-0.0
3,122,458	-		Sama_2607	0.79	-2.3
3,122,458	-		Sama_2607	0.79	-1.7
3,122,496	+		Sama_2607	0.81	-1.4
3,122,497	-		Sama_2607	0.82	-1.6
3,122,514	+		Sama_2607	0.83	+0.0
3,122,514	+		Sama_2607	0.83	+0.6
3,122,514	+		Sama_2607	0.83	+1.6
3,122,515	-		Sama_2607	0.83	-2.6
3,122,515	-		Sama_2607	0.83	+0.1
3,122,526	-		Sama_2607	0.83	+1.2
3,122,576	+		Sama_2607	0.86	+3.4
3,122,576	+		Sama_2607	0.86	+0.0
3,122,576	+		Sama_2607	0.86	+0.8
3,122,576	+		Sama_2607	0.86	-0.6
3,122,577	-		Sama_2607	0.86	-0.7
3,122,577	-		Sama_2607	0.86	-0.6
3,122,577	-		Sama_2607	0.86	-1.6
3,122,577	-		Sama_2607	0.86	-1.2
3,122,577	-		Sama_2607	0.86	+0.8
3,122,593	-		Sama_2607	0.87	+1.0
3,122,595	+		Sama_2607	0.88	+0.2
3,122,595	+		Sama_2607	0.88	+0.0
3,122,595	+		Sama_2607	0.88	+2.1
3,122,596	-		Sama_2607	0.88	-0.5
3,122,596	-		Sama_2607	0.88	+0.6
3,122,596	-		Sama_2607	0.88	+1.4
3,122,596	-		Sama_2607	0.88	+1.6
3,122,596	-		Sama_2607	0.88	-2.8
3,122,598	+		Sama_2607	0.88	-0.7
3,122,599	-		Sama_2607	0.88	+0.0
3,122,606	+		Sama_2607	0.88	-1.2
3,122,606	+		Sama_2607	0.88	+0.8
3,122,607	-		Sama_2607	0.88	-0.4
3,122,607	-		Sama_2607	0.88	-0.0
3,122,611	-		Sama_2607	0.89	-0.4
3,122,618	+		Sama_2607	0.89	-1.7
3,122,618	+		Sama_2607	0.89	-1.4
3,122,618	+		Sama_2607	0.89	+1.0
3,122,619	-		Sama_2607	0.89	-1.2
3,122,619	-		Sama_2607	0.89	-1.3
3,122,619	-		Sama_2607	0.89	-1.6
3,122,690	+				-0.5
3,122,690	+				-0.6
3,122,691	-				+0.5
3,122,691	-				-2.0
3,122,787	+				-2.3
3,122,788	-				+0.3
3,122,788	-				-0.1
3,122,809	-				+0.3
3,122,809	-				+0.0
3,122,809	-				-1.3
3,122,816	+				-2.6
3,122,843	+				-0.7
3,122,844	-				-2.0
3,122,875	+				-0.7
3,122,876	-				+2.7
3,122,876	-				-0.3
3,122,884	+				+0.1
3,122,884	+				+1.9
3,122,884	+				-2.3
3,122,885	-				-1.6
3,122,885	-				-0.2
3,122,885	-				+0.0
3,122,885	-				+1.4
3,122,885	-				-0.6
3,122,885	-				-0.1
3,122,885	-				+1.9
3,122,913	+				-1.5
3,122,932	-				-1.2
3,123,004	+				+1.0
3,123,004	+				-0.4
3,123,005	-				-0.4
3,123,005	-				-1.0
3,123,032	+				-0.9
3,123,032	+				+1.6
3,123,032	+				-2.6
3,123,032	+				+0.4
3,123,048	-				-1.8
3,123,048	-				-1.5
3,123,067	+				+0.6
3,123,067	+				+0.9
3,123,068	-				+2.0
3,123,068	-				-1.4
3,123,068	-				-1.2
3,123,068	-				-0.1
3,123,098	+		Sama_2608	0.11	-0.4
3,123,098	+		Sama_2608	0.11	-1.7
3,123,099	-		Sama_2608	0.11	-0.4
3,123,099	-		Sama_2608	0.11	+2.0
3,123,099	-		Sama_2608	0.11	-1.7
3,123,099	-		Sama_2608	0.11	-1.8
3,123,101	+		Sama_2608	0.11	-1.6
3,123,101	+		Sama_2608	0.11	-3.1
3,123,101	+		Sama_2608	0.11	-1.4
3,123,101	+		Sama_2608	0.11	+1.5
3,123,102	-		Sama_2608	0.11	-1.0
3,123,102	-		Sama_2608	0.11	-1.5
3,123,102	-		Sama_2608	0.11	-0.4
3,123,302	+		Sama_2608	0.24	-0.4
3,123,314	+		Sama_2608	0.25	-2.2
3,123,314	+		Sama_2608	0.25	-3.0
3,123,314	+		Sama_2608	0.25	+1.3
3,123,315	-		Sama_2608	0.25	+2.1
3,123,315	-		Sama_2608	0.25	-2.0
3,123,327	-		Sama_2608	0.26	+0.4
3,123,332	+		Sama_2608	0.26	+2.1
3,123,332	+		Sama_2608	0.26	-0.7
3,123,332	+		Sama_2608	0.26	-0.3
3,123,332	+		Sama_2608	0.26	+1.6
3,123,332	+		Sama_2608	0.26	+2.8
3,123,333	-		Sama_2608	0.26	-0.8
3,123,333	-		Sama_2608	0.26	+0.7
3,123,333	-		Sama_2608	0.26	+2.1
3,123,333	-		Sama_2608	0.26	-0.3
3,123,333	-		Sama_2608	0.26	-1.0
3,123,333	-		Sama_2608	0.26	+4.6
3,123,333	-		Sama_2608	0.26	+0.3
3,123,334	+		Sama_2608	0.26	+0.6
3,123,334	+		Sama_2608	0.26	+0.5
3,123,335	-		Sama_2608	0.26	+1.0
3,123,335	-		Sama_2608	0.26	+0.3
3,123,335	-		Sama_2608	0.26	+0.1
3,123,335	-		Sama_2608	0.26	+1.2
3,123,383	+		Sama_2608	0.29	-1.2
3,123,484	+		Sama_2608	0.35	-0.3
3,123,485	-		Sama_2608	0.36	-1.2
3,123,485	-		Sama_2608	0.36	-1.4
3,123,521	+		Sama_2608	0.38	-1.4
3,123,522	-		Sama_2608	0.38	-0.4
3,123,522	-		Sama_2608	0.38	-0.2
3,123,554	+		Sama_2608	0.40	+1.6
3,123,620	+		Sama_2608	0.44	+0.4
3,123,620	+		Sama_2608	0.44	-1.4
3,123,621	-		Sama_2608	0.44	+1.2
3,123,639	+		Sama_2608	0.45	-3.0
3,123,639	+		Sama_2608	0.45	-0.1
3,123,639	+		Sama_2608	0.45	+1.0
3,123,640	-		Sama_2608	0.45	-0.6
3,123,640	-		Sama_2608	0.45	+0.0
3,123,640	-		Sama_2608	0.45	-0.9
3,123,672	+		Sama_2608	0.47	-1.2
3,123,672	+		Sama_2608	0.47	+0.7
3,123,672	+		Sama_2608	0.47	-0.3
3,123,719	+		Sama_2608	0.50	+0.2
3,123,719	+		Sama_2608	0.50	-0.1
3,123,719	+		Sama_2608	0.50	+1.1
3,123,720	-		Sama_2608	0.50	-1.8
3,123,780	+		Sama_2608	0.54	-2.9
3,123,780	+		Sama_2608	0.54	+1.8
3,123,780	+		Sama_2608	0.54	+1.5
3,123,780	+		Sama_2608	0.54	+1.8