Strain Fitness in Shewanella amazonensis SB2B around Sama_2594
Experiment: Motility assay, center cut sample 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Motility assay, center cut sample 2 |
---|---|---|---|---|---|
remove | |||||
3,101,430 | - | +0.6 | |||
3,101,430 | - | -0.6 | |||
3,101,510 | + | -1.9 | |||
3,101,811 | + | +1.5 | |||
3,101,811 | + | -0.5 | |||
3,101,811 | + | +0.0 | |||
3,101,811 | + | +2.9 | |||
3,101,812 | - | -2.5 | |||
3,101,812 | - | -0.6 | |||
3,101,812 | - | -0.4 | |||
3,101,812 | - | -0.7 | |||
3,101,812 | - | +0.5 | |||
3,101,815 | + | -0.8 | |||
3,101,816 | - | +0.3 | |||
3,101,832 | + | -0.5 | |||
3,101,832 | + | +1.3 | |||
3,101,832 | + | +1.9 | |||
3,101,870 | + | -1.7 | |||
3,101,870 | + | +3.5 | |||
3,102,548 | + | +0.2 | |||
3,103,523 | + | +0.2 | |||
3,103,523 | + | -0.7 | |||
3,103,523 | + | +1.6 | |||
3,103,524 | - | -1.4 | |||
3,103,524 | - | +1.0 | |||
3,103,533 | + | +0.2 | |||
3,103,533 | + | +1.1 | |||
3,103,533 | + | -0.4 | |||
3,103,534 | - | -1.3 | |||
3,103,534 | - | +0.7 | |||
3,103,539 | + | +0.7 | |||
3,103,539 | + | +0.9 | |||
3,103,539 | + | -2.6 |
Or see this region's nucleotide sequence