Strain Fitness in Shewanella amazonensis SB2B around Sama_R0101

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
3,077,035	+				+0.4
3,077,035	+				-0.7
3,077,114	-				+1.2
3,077,185	+				+2.0
3,077,185	+				+2.2
3,077,185	+				-1.4
3,077,186	-				-1.0
3,077,186	-				-1.8
3,077,186	-				-2.1
3,077,186	-				-1.1
3,077,201	+				+0.9
3,077,202	-				-0.5
3,077,312	-				-2.8
3,077,378	+				-0.9
3,077,379	-				+0.2
3,077,382	+				-1.0
3,077,382	+				+1.1
3,077,419	-				-0.2
3,077,419	-				-0.7
3,077,419	-				+0.1
3,077,419	-				+0.8
3,077,419	-				+0.8
3,077,423	-				+1.4
3,077,423	-				+0.2
3,077,423	-				-1.7
3,077,423	-				-0.2
3,077,423	-				-0.3
3,077,423	-				+1.2
3,077,423	-				-1.4
3,077,423	-				+0.6
3,077,423	-				-1.0
3,077,423	-				+0.7
3,077,423	-				+0.0
3,077,437	-		Sama_R0101	0.17	-1.7
3,077,437	-		Sama_R0101	0.17	-0.7
3,077,450	-		Sama_R0101	0.35	-0.4
3,077,450	-		Sama_R0101	0.35	-2.7
3,077,450	-		Sama_R0101	0.35	-0.9
3,077,450	-		Sama_R0101	0.35	+1.6
3,077,450	-		Sama_R0101	0.35	-2.1
3,077,450	-		Sama_R0101	0.35	-0.6
3,077,454	-		Sama_R0101	0.40	+1.6
3,077,542	-				-1.4
3,077,542	-				-0.0
3,077,542	-				-0.6
3,077,547	-				-0.6
3,077,547	-				-0.4
3,077,551	-		Sama_R0102	0.10	-2.3
3,077,551	-		Sama_R0102	0.10	-0.4
3,077,583	-		Sama_R0102	0.52	-1.6
3,077,651	-		Sama_R0103	0.40	-3.1
3,078,124	-				-0.8
3,078,161	+				+0.1
3,078,161	+				+1.0
3,078,162	-				+0.9
3,078,162	-				-1.8
3,078,162	-				+1.6
3,078,199	-				+2.0
3,078,236	-				-1.6
3,078,243	+				-0.7
3,078,244	-				-0.8
3,078,244	-				-2.3
3,078,244	-				-0.7
3,078,251	-				-2.1
3,078,319	-		Sama_2571	0.11	+0.0
3,078,444	+		Sama_2571	0.23	-0.7