Strain Fitness in Shewanella amazonensis SB2B around Sama_2488

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,989,996	-				+0.3
2,990,058	+				-1.0
2,990,059	-				+0.2
2,990,173	+		Sama_2487	0.11	-2.3
2,990,173	+		Sama_2487	0.11	+0.4
2,990,173	+		Sama_2487	0.11	-1.2
2,990,173	+		Sama_2487	0.11	+1.6
2,990,173	+		Sama_2487	0.11	-1.7
2,990,174	-		Sama_2487	0.11	-2.0
2,990,174	-		Sama_2487	0.11	-0.2
2,990,174	-		Sama_2487	0.11	-0.6
2,990,174	-		Sama_2487	0.11	-1.7
2,990,203	-		Sama_2487	0.14	-1.2
2,990,270	+		Sama_2487	0.21	+2.2
2,990,270	+		Sama_2487	0.21	+0.6
2,990,271	-		Sama_2487	0.22	-0.2
2,990,271	-		Sama_2487	0.22	+1.3
2,990,271	-		Sama_2487	0.22	+0.0
2,990,366	+		Sama_2487	0.32	-0.9
2,990,367	-		Sama_2487	0.32	-1.0
2,990,367	-		Sama_2487	0.32	-0.4
2,990,414	+		Sama_2487	0.37	+1.6
2,990,420	-		Sama_2487	0.38	+1.2
2,990,423	+		Sama_2487	0.38	+0.4
2,990,513	+		Sama_2487	0.48	+0.6
2,990,541	-		Sama_2487	0.51	+0.2
2,990,569	-		Sama_2487	0.54	+1.3
2,990,569	-		Sama_2487	0.54	-2.0
2,990,569	-		Sama_2487	0.54	-1.2
2,990,569	-		Sama_2487	0.54	+1.3
2,990,576	-		Sama_2487	0.55	-0.4
2,990,662	-		Sama_2487	0.64	-0.5
2,990,662	-		Sama_2487	0.64	+0.9
2,990,703	+		Sama_2487	0.69	-2.2
2,990,704	-		Sama_2487	0.69	-1.4
2,990,760	-		Sama_2487	0.75	+0.2
2,990,760	-		Sama_2487	0.75	-0.7
2,990,760	-		Sama_2487	0.75	-0.7
2,990,760	-		Sama_2487	0.75	-1.7
2,990,789	-		Sama_2487	0.78	+1.0
2,990,799	+		Sama_2487	0.79	-0.9
2,990,799	+		Sama_2487	0.79	+0.5
2,990,800	-		Sama_2487	0.79	+1.7
2,990,847	+		Sama_2487	0.84	-0.4
2,990,847	+		Sama_2487	0.84	+0.2
2,990,847	+		Sama_2487	0.84	-1.6
2,990,863	+		Sama_2487	0.86	-1.9
2,990,880	+		Sama_2487	0.88	-1.9
2,990,880	+		Sama_2487	0.88	+0.9
2,990,881	-		Sama_2487	0.88	+1.0
2,990,881	-		Sama_2487	0.88	-1.6
2,990,881	-		Sama_2487	0.88	+0.5
2,990,881	-		Sama_2487	0.88	-1.0
2,990,882	+		Sama_2487	0.88	-0.2
2,990,883	-		Sama_2487	0.88	-0.4
2,990,912	+				+0.0
2,990,913	-				-0.2
2,990,913	-				+0.1
2,990,993	+				-0.4
2,990,994	-				+1.0
2,991,012	-				+2.1
2,991,023	-				-1.7
2,991,023	-				-0.6
2,991,023	-				+0.7
2,991,118	-		Sama_2488	0.39	+0.1
2,991,118	-		Sama_2488	0.39	+0.8
2,991,118	-		Sama_2488	0.39	+0.0
2,991,118	-		Sama_2488	0.39	-0.6
2,991,118	-		Sama_2488	0.39	-1.7
2,991,118	-		Sama_2488	0.39	+1.0
2,991,118	-		Sama_2488	0.39	-0.7
2,991,190	-		Sama_2488	0.61	-0.4
2,991,244	+		Sama_2488	0.77	+0.3
2,991,244	+		Sama_2488	0.77	+1.0
2,991,245	-		Sama_2488	0.77	-0.3
2,991,245	-		Sama_2488	0.77	-1.0
2,991,322	+				-1.7
2,991,323	-				-1.0
2,991,323	-				+1.0
2,991,323	-				-0.3
2,991,345	-				+0.0
2,991,345	-				-0.5
2,991,449	+	trmB	Sama_2489	0.14	-1.5
2,991,449	+	trmB	Sama_2489	0.14	+0.4
2,991,450	-	trmB	Sama_2489	0.14	-2.1
2,991,450	-	trmB	Sama_2489	0.14	-1.0
2,991,450	-	trmB	Sama_2489	0.14	-1.0
2,991,450	-	trmB	Sama_2489	0.14	-2.3
2,991,450	-	trmB	Sama_2489	0.14	+0.3
2,991,450	-	trmB	Sama_2489	0.14	+1.2
2,991,460	-	trmB	Sama_2489	0.15	-1.9
2,991,507	+	trmB	Sama_2489	0.22	-0.4
2,991,507	+	trmB	Sama_2489	0.22	-0.8
2,991,508	-	trmB	Sama_2489	0.22	-1.0
2,991,508	-	trmB	Sama_2489	0.22	+0.0
2,991,508	-	trmB	Sama_2489	0.22	+0.0
2,991,541	-	trmB	Sama_2489	0.27	-1.4
2,991,575	-	trmB	Sama_2489	0.32	+1.0
2,991,798	+	trmB	Sama_2489	0.63	-2.2
2,991,798	+	trmB	Sama_2489	0.63	-2.4
2,991,799	-	trmB	Sama_2489	0.63	-2.5
2,991,799	-	trmB	Sama_2489	0.63	-2.2
2,991,799	-	trmB	Sama_2489	0.63	-0.2
2,991,799	-	trmB	Sama_2489	0.63	-0.7
2,991,799	-	trmB	Sama_2489	0.63	-0.2
2,991,799	-	trmB	Sama_2489	0.63	-0.7
2,991,873	+	trmB	Sama_2489	0.73	-1.3
2,991,873	+	trmB	Sama_2489	0.73	-1.0
2,991,874	-	trmB	Sama_2489	0.73	-0.6
2,991,874	-	trmB	Sama_2489	0.73	+0.1
2,991,874	-	trmB	Sama_2489	0.73	-0.7
2,991,874	-	trmB	Sama_2489	0.73	-0.3
2,991,893	-	trmB	Sama_2489	0.76	-0.5
2,991,906	+	trmB	Sama_2489	0.78	-1.3
2,991,923	+	trmB	Sama_2489	0.80	-1.2
2,991,923	+	trmB	Sama_2489	0.80	+2.3
2,991,979	-	trmB	Sama_2489	0.88	-1.1
2,991,979	-	trmB	Sama_2489	0.88	+2.3
2,992,010	-				-0.7
2,992,010	-				+0.8
2,992,022	+				-3.1
2,992,054	+				+4.0
2,992,055	-				+1.6
2,992,055	-				-1.3
2,992,122	-				+0.6
2,992,122	-				+0.1
2,992,122	-				-3.2
2,992,162	+				-1.4
2,992,196	+				+2.1
2,992,196	+				+0.4
2,992,197	-				+0.6
2,992,198	+				+1.1
2,992,199	-				+1.0
2,992,199	-				+2.0
2,992,273	+				+1.0
2,992,274	-				+0.2