Strain Fitness in Shewanella amazonensis SB2B around Sama_2414

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,900,886	+		Sama_2413	0.63	-1.9
2,900,886	+		Sama_2413	0.63	+4.7
2,900,887	-		Sama_2413	0.63	-2.7
2,900,887	-		Sama_2413	0.63	+1.7
2,900,887	-		Sama_2413	0.63	+2.2
2,900,887	-		Sama_2413	0.63	+0.7
2,900,887	-		Sama_2413	0.63	-0.5
2,900,892	+		Sama_2413	0.64	+0.1
2,900,893	-		Sama_2413	0.64	-2.5
2,900,893	-		Sama_2413	0.64	-2.3
2,900,927	-		Sama_2413	0.66	-0.7
2,900,944	-		Sama_2413	0.67	-0.2
2,900,957	-		Sama_2413	0.68	-2.2
2,901,023	+		Sama_2413	0.72	+1.7
2,901,023	+		Sama_2413	0.72	+0.7
2,901,023	+		Sama_2413	0.72	+3.5
2,901,023	+		Sama_2413	0.72	+0.2
2,901,023	+		Sama_2413	0.72	-0.2
2,901,023	+		Sama_2413	0.72	-0.8
2,901,023	+		Sama_2413	0.72	-0.9
2,901,023	+		Sama_2413	0.72	-0.7
2,901,023	+		Sama_2413	0.72	-1.2
2,901,023	+		Sama_2413	0.72	-0.1
2,901,023	+		Sama_2413	0.72	-0.7
2,901,023	+		Sama_2413	0.72	+0.2
2,901,023	+		Sama_2413	0.72	+4.7
2,901,024	-		Sama_2413	0.72	-1.7
2,901,024	-		Sama_2413	0.72	+1.3
2,901,024	-		Sama_2413	0.72	+0.3
2,901,024	-		Sama_2413	0.72	+1.5
2,901,024	-		Sama_2413	0.72	+0.7
2,901,024	-		Sama_2413	0.72	-1.3
2,901,024	-		Sama_2413	0.72	-0.1
2,901,024	-		Sama_2413	0.72	-0.8
2,901,024	-		Sama_2413	0.72	-1.2
2,901,024	-		Sama_2413	0.72	-0.7
2,901,082	+		Sama_2413	0.76	-0.3
2,901,082	+		Sama_2413	0.76	+1.4
2,901,082	+		Sama_2413	0.76	-1.5
2,901,082	+		Sama_2413	0.76	-1.0
2,901,083	-		Sama_2413	0.76	+1.2
2,901,083	-		Sama_2413	0.76	+1.0
2,901,111	+		Sama_2413	0.78	+1.9
2,901,111	+		Sama_2413	0.78	-0.8
2,901,111	+		Sama_2413	0.78	+0.7
2,901,111	+		Sama_2413	0.78	-2.7
2,901,112	-		Sama_2413	0.78	-2.4
2,901,112	-		Sama_2413	0.78	-2.2
2,901,112	-		Sama_2413	0.78	-0.9
2,901,112	-		Sama_2413	0.78	-0.1
2,901,112	-		Sama_2413	0.78	+1.8
2,901,112	-		Sama_2413	0.78	-0.1
2,901,114	+		Sama_2413	0.78	+1.3
2,901,142	+		Sama_2413	0.80	+2.7
2,901,143	-		Sama_2413	0.80	-2.4
2,901,159	-		Sama_2413	0.81	-1.1
2,901,214	-		Sama_2413	0.84	+1.3
2,901,238	+		Sama_2413	0.86	-0.2
2,901,239	-		Sama_2413	0.86	+0.3
2,901,351	+				+0.5
2,901,409	+				-0.5
2,901,409	+				+1.1
2,901,409	+				-1.9
2,901,410	-				+0.7
2,901,421	+				-1.2
2,901,421	+				-0.0
2,901,546	+				-1.8
2,901,546	+				+0.4
2,901,546	+				-0.7
2,901,547	-				+1.7
2,901,547	-				+1.5
2,901,547	-				+0.5
2,901,547	-				-2.3
2,901,547	-				+0.1
2,901,547	-				+1.7
2,901,547	-				-0.4
2,901,547	-				-1.9
2,901,547	-				-2.0
2,901,548	+				-1.5
2,901,549	-				+0.6
2,901,549	-				-0.5
2,901,549	-				+0.9
2,901,549	-				-0.3
2,901,558	+				+1.8
2,901,558	+				+0.5
2,901,559	-				-0.9
2,901,559	-				+0.1
2,901,560	+				+0.4
2,901,561	-				+0.8
2,901,561	-				+0.1
2,901,606	+				-0.5
2,901,606	+				-1.8
2,901,642	+				-0.5
2,901,643	-				-1.3
2,901,643	-				-0.8
2,901,658	-				-0.9
2,901,673	+				+2.5
2,901,673	+				+1.4
2,901,673	+				+0.3
2,901,674	-				-0.7
2,901,676	+				+0.7
2,901,677	-				+2.4
2,901,695	+				-0.5
2,901,695	+				+0.9
2,901,695	+				-0.5
2,901,695	+				-0.8
2,901,695	+				-1.0
2,901,696	-				-1.5
2,901,696	-				-0.1
2,901,696	-				-0.4
2,901,696	-				-0.3
2,901,696	-				+1.3
2,901,696	-				+0.9
2,901,696	-				+0.3
2,901,696	-				-0.9
2,901,718	+				+0.6
2,901,719	-				-0.7
2,901,719	-				-0.2
2,901,719	-				-1.6
2,901,750	+				-2.0
2,901,779	-				-0.3
2,901,833	-				-0.8
2,901,859	+				-1.3
2,901,860	-				+1.8
2,901,860	-				+0.7
2,901,868	+				-1.5
2,901,992	+		Sama_2414	0.27	-0.7
2,901,993	-		Sama_2414	0.28	-1.6
2,901,993	-		Sama_2414	0.28	-2.4
2,902,057	+		Sama_2414	0.42	+1.7
2,902,057	+		Sama_2414	0.42	-0.7
2,902,057	+		Sama_2414	0.42	-1.5
2,902,057	+		Sama_2414	0.42	+0.7
2,902,058	-		Sama_2414	0.42	-1.5
2,902,058	-		Sama_2414	0.42	+0.3
2,902,058	-		Sama_2414	0.42	-1.4
2,902,088	-		Sama_2414	0.49	+0.4
2,902,088	-		Sama_2414	0.49	+0.1
2,902,109	+		Sama_2414	0.54	+2.5
2,902,110	-		Sama_2414	0.54	-2.0
2,902,169	+		Sama_2414	0.68	+0.1
2,902,169	+		Sama_2414	0.68	+0.3
2,902,169	+		Sama_2414	0.68	-1.5
2,902,169	+		Sama_2414	0.68	+0.1
2,902,169	+		Sama_2414	0.68	+0.7
2,902,169	+		Sama_2414	0.68	+1.8
2,902,169	+		Sama_2414	0.68	-2.4
2,902,169	+		Sama_2414	0.68	+1.1
2,902,169	+		Sama_2414	0.68	+0.7
2,902,169	+		Sama_2414	0.68	-1.0
2,902,170	-		Sama_2414	0.68	-0.4
2,902,170	-		Sama_2414	0.68	-0.7
2,902,170	-		Sama_2414	0.68	+0.4
2,902,170	-		Sama_2414	0.68	+0.8
2,902,170	-		Sama_2414	0.68	-0.3
2,902,170	-		Sama_2414	0.68	+0.4
2,902,170	-		Sama_2414	0.68	-0.2
2,902,170	-		Sama_2414	0.68	+1.0
2,902,170	+		Sama_2414	0.68	+2.1
2,902,170	-		Sama_2414	0.68	-0.7
2,902,170	-		Sama_2414	0.68	+2.3
2,902,170	-		Sama_2414	0.68	-0.3
2,902,170	-		Sama_2414	0.68	-0.8
2,902,170	-		Sama_2414	0.68	-1.7
2,902,171	+		Sama_2414	0.68	+0.5
2,902,171	+		Sama_2414	0.68	+1.1
2,902,172	-		Sama_2414	0.68	+0.2
2,902,172	-		Sama_2414	0.68	-3.3
2,902,172	-		Sama_2414	0.68	+0.1
2,902,198	+		Sama_2414	0.74	-0.3
2,902,198	+		Sama_2414	0.74	+1.5
2,902,215	+		Sama_2414	0.78	+0.5
2,902,215	+		Sama_2414	0.78	-0.3
2,902,215	+		Sama_2414	0.78	-1.2
2,902,215	+		Sama_2414	0.78	-1.9
2,902,216	-		Sama_2414	0.79	+2.9
2,902,267	+				-0.6
2,902,307	+				-2.7
2,902,307	+				-0.2
2,902,308	-				-1.9
2,902,318	-				+1.7
2,902,345	+				-0.5
2,902,345	+				-0.3
2,902,346	-				-0.5
2,902,346	-				-1.7
2,902,346	-				+1.7
2,902,346	-				+0.1
2,902,346	-				-0.1
2,902,346	-				-1.0
2,902,419	-				-1.7
2,902,509	+				+2.2
2,902,509	+				-0.8
2,902,510	-				+1.4
2,902,510	-				-0.5
2,902,564	-				-0.1
2,902,625	+				-0.9
2,902,672	-				-2.0
2,902,776	-		Sama_2415	0.11	+1.5
2,902,776	-		Sama_2415	0.11	+0.7
2,902,939	-		Sama_2415	0.16	+1.3
2,902,968	-		Sama_2415	0.17	-0.2
2,902,968	-		Sama_2415	0.17	+1.3
2,903,012	+		Sama_2415	0.18	+1.9
2,903,012	+		Sama_2415	0.18	+0.8
2,903,013	-		Sama_2415	0.18	+1.3
2,903,087	+		Sama_2415	0.21	-1.5
2,903,088	-		Sama_2415	0.21	+0.7
2,903,146	-		Sama_2415	0.22	+0.2
2,903,146	-		Sama_2415	0.22	+1.1
2,903,146	-		Sama_2415	0.22	+1.0
2,903,170	+		Sama_2415	0.23	+1.0
2,903,171	-		Sama_2415	0.23	-0.9
2,903,251	-		Sama_2415	0.26	+0.8