Strain Fitness in Shewanella amazonensis SB2B around Sama_2337

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,801,829	+		Sama_2336	0.16	+0.1
2,801,865	-		Sama_2336	0.21	-1.2
2,801,899	+		Sama_2336	0.26	-1.4
2,801,912	+		Sama_2336	0.28	-3.1
2,801,913	-		Sama_2336	0.28	+0.6
2,801,984	+		Sama_2336	0.38	-1.7
2,801,984	+		Sama_2336	0.38	-3.3
2,801,985	-		Sama_2336	0.38	-2.5
2,801,985	-		Sama_2336	0.38	-0.4
2,801,986	+		Sama_2336	0.39	-0.9
2,801,987	-		Sama_2336	0.39	-2.5
2,801,988	+		Sama_2336	0.39	-1.4
2,801,989	-		Sama_2336	0.39	-1.8
2,801,989	-		Sama_2336	0.39	-0.9
2,801,989	-		Sama_2336	0.39	-4.2
2,801,989	-		Sama_2336	0.39	-2.7
2,801,989	-		Sama_2336	0.39	+0.6
2,801,989	-		Sama_2336	0.39	-1.9
2,801,989	-		Sama_2336	0.39	-2.2
2,801,993	+		Sama_2336	0.40	-1.4
2,802,001	+		Sama_2336	0.41	-2.9
2,802,001	+		Sama_2336	0.41	-1.2
2,802,001	+		Sama_2336	0.41	-2.7
2,802,002	-		Sama_2336	0.41	-2.7
2,802,002	-		Sama_2336	0.41	-2.3
2,802,002	-		Sama_2336	0.41	-1.4
2,802,009	+		Sama_2336	0.42	-1.9
2,802,009	+		Sama_2336	0.42	-1.8
2,802,010	-		Sama_2336	0.42	-1.5
2,802,014	-		Sama_2336	0.43	-3.1
2,802,014	-		Sama_2336	0.43	-3.1
2,802,068	+		Sama_2336	0.50	-2.9
2,802,068	+		Sama_2336	0.50	-0.4
2,802,068	+		Sama_2336	0.50	-2.4
2,802,069	-		Sama_2336	0.51	-2.1
2,802,069	-		Sama_2336	0.51	+0.1
2,802,069	-		Sama_2336	0.51	+0.6
2,802,069	-		Sama_2336	0.51	-1.5
2,802,069	-		Sama_2336	0.51	-3.3
2,802,069	-		Sama_2336	0.51	+0.1
2,802,157	-		Sama_2336	0.63	-0.9
2,802,157	-		Sama_2336	0.63	-2.4
2,802,157	-		Sama_2336	0.63	-2.9
2,802,298	-		Sama_2336	0.83	-1.5
2,802,322	+		Sama_2336	0.87	-0.9
2,802,323	-		Sama_2336	0.87	-1.2
2,802,323	-		Sama_2336	0.87	-1.8
2,802,394	-				-0.9
2,802,454	-				+1.6
2,802,490	+				-0.5
2,802,512	-				+0.1
2,802,545	-				+2.0
2,802,586	-				-2.4
2,802,591	-				-2.2
2,802,603	+				-0.3
2,802,604	-				-1.7
2,802,663	+				+0.2
2,802,664	-				+0.2
2,802,664	-				+1.8
2,802,666	+				+0.1
2,802,666	+				+0.8
2,802,666	+				+0.7
2,802,667	-				-0.5
2,802,667	-				+0.3
2,802,667	-				+1.4
2,802,720	+				-0.2
2,802,728	+				-1.2
2,802,729	-				-0.2
2,802,729	-				-2.4
2,802,742	-				+0.1
2,802,747	+				-2.2
2,802,748	-				-1.2
2,802,748	-				-3.2
2,802,748	-				-0.4
2,802,748	-				-0.8
2,802,748	-				-2.1
2,802,748	-				+3.8
2,802,748	-				-2.3
2,802,748	-				-1.5
2,802,748	-				-1.4
2,802,879	+				-0.9
2,802,880	-				-1.8
2,802,900	-				-0.7
2,802,979	-				-0.4
2,802,985	+				-1.4
2,802,986	-				-3.6
2,802,989	-				-0.5
2,803,018	-				-1.9
2,803,021	+				+0.1
2,803,021	+				-1.7
2,803,022	-				-2.7
2,803,096	+		Sama_2337	0.11	-1.7
2,803,103	-		Sama_2337	0.11	-2.4
2,803,127	-		Sama_2337	0.12	-0.7
2,803,176	-		Sama_2337	0.14	-2.6
2,803,186	-		Sama_2337	0.15	-2.9
2,803,190	+		Sama_2337	0.15	-3.0
2,803,212	+		Sama_2337	0.16	-2.9
2,803,233	+		Sama_2337	0.17	-1.2
2,803,239	+		Sama_2337	0.17	-1.2
2,803,239	+		Sama_2337	0.17	-0.4
2,803,240	-		Sama_2337	0.17	-2.7
2,803,240	-		Sama_2337	0.17	-2.4
2,803,251	+		Sama_2337	0.17	-3.7
2,803,251	+		Sama_2337	0.17	-0.4
2,803,252	-		Sama_2337	0.17	-1.2
2,803,282	+		Sama_2337	0.19	-2.1
2,803,372	+		Sama_2337	0.22	-2.9
2,803,415	+		Sama_2337	0.24	-2.4
2,803,416	-		Sama_2337	0.24	-2.4
2,803,416	-		Sama_2337	0.24	-3.2
2,803,454	-		Sama_2337	0.25	-3.9
2,803,454	-		Sama_2337	0.25	-2.2
2,803,520	-		Sama_2337	0.28	-3.7
2,803,520	-		Sama_2337	0.28	-2.2
2,803,590	-		Sama_2337	0.31	-1.7
2,803,600	+		Sama_2337	0.31	-2.7
2,803,625	+		Sama_2337	0.32	-2.9
2,803,626	-		Sama_2337	0.32	-2.7
2,803,654	+		Sama_2337	0.34	-1.2
2,803,691	+		Sama_2337	0.35	-2.1
2,803,695	+		Sama_2337	0.35	-0.4
2,803,695	+		Sama_2337	0.35	-2.9
2,803,695	+		Sama_2337	0.35	-2.8
2,803,695	+		Sama_2337	0.35	-1.4
2,803,696	-		Sama_2337	0.35	-2.1
2,803,696	-		Sama_2337	0.35	-4.2
2,803,730	+		Sama_2337	0.37	-2.7
2,803,754	+		Sama_2337	0.38	-3.0
2,803,854	-		Sama_2337	0.42	-2.4
2,803,887	-		Sama_2337	0.43	-1.5
2,803,917	+		Sama_2337	0.44	-0.4
2,803,917	+		Sama_2337	0.44	-1.5
2,803,917	+		Sama_2337	0.44	-2.4
2,803,917	+		Sama_2337	0.44	+0.2
2,803,918	-		Sama_2337	0.44	-1.9
2,803,918	-		Sama_2337	0.44	-2.6
2,803,918	-		Sama_2337	0.44	-1.8
2,803,918	-		Sama_2337	0.44	-2.7
2,803,918	-		Sama_2337	0.44	-2.1
2,803,918	-		Sama_2337	0.44	-3.3
2,803,918	-		Sama_2337	0.44	-2.7
2,803,944	-		Sama_2337	0.45	+0.1
2,803,955	-		Sama_2337	0.46	-2.6
2,803,977	+		Sama_2337	0.47	-1.9
2,803,977	+		Sama_2337	0.47	-2.1
2,803,978	-		Sama_2337	0.47	-1.2
2,803,978	-		Sama_2337	0.47	-2.7
2,803,978	-		Sama_2337	0.47	-3.9
2,804,021	-		Sama_2337	0.48	-1.4
2,804,021	-		Sama_2337	0.48	-1.4
2,804,021	-		Sama_2337	0.48	-3.2
2,804,057	+		Sama_2337	0.50	-1.9
2,804,058	-		Sama_2337	0.50	-1.9
2,804,109	-		Sama_2337	0.52	-1.5
2,804,109	-		Sama_2337	0.52	-1.8
2,804,109	-		Sama_2337	0.52	-1.2
2,804,190	+		Sama_2337	0.55	-3.4
2,804,190	+		Sama_2337	0.55	-2.2
2,804,190	+		Sama_2337	0.55	-2.5
2,804,202	-		Sama_2337	0.56	-1.7
2,804,209	+		Sama_2337	0.56	-1.4
2,804,209	+		Sama_2337	0.56	-1.2
2,804,209	+		Sama_2337	0.56	-2.1
2,804,210	-		Sama_2337	0.56	-1.7
2,804,210	-		Sama_2337	0.56	-1.9
2,804,283	+		Sama_2337	0.59	-3.4
2,804,283	+		Sama_2337	0.59	-2.2
2,804,283	+		Sama_2337	0.59	-0.9
2,804,284	-		Sama_2337	0.59	-3.0
2,804,284	-		Sama_2337	0.59	-1.2
2,804,284	-		Sama_2337	0.59	-0.4
2,804,284	-		Sama_2337	0.59	-1.8
2,804,286	+		Sama_2337	0.59	-1.4
2,804,297	-		Sama_2337	0.59	-2.3
2,804,299	+		Sama_2337	0.60	-3.5
2,804,352	+		Sama_2337	0.62	-3.2
2,804,353	-		Sama_2337	0.62	-2.4
2,804,353	-		Sama_2337	0.62	-2.5
2,804,387	+		Sama_2337	0.63	-2.5
2,804,414	+		Sama_2337	0.64	-2.3
2,804,415	-		Sama_2337	0.64	-3.3
2,804,444	+		Sama_2337	0.65	-3.4
2,804,457	+		Sama_2337	0.66	-3.5
2,804,460	+		Sama_2337	0.66	-3.3
2,804,470	+		Sama_2337	0.66	-1.9
2,804,494	+		Sama_2337	0.67	-0.7
2,804,494	+		Sama_2337	0.67	-1.4
2,804,494	+		Sama_2337	0.67	-1.2
2,804,494	+		Sama_2337	0.67	-3.3
2,804,494	+		Sama_2337	0.67	-1.8
2,804,495	-		Sama_2337	0.67	-2.6
2,804,531	-		Sama_2337	0.69	-1.8
2,804,641	+		Sama_2337	0.73	-1.2
2,804,641	+		Sama_2337	0.73	+0.6
2,804,718	+		Sama_2337	0.76	-2.2
2,804,762	-		Sama_2337	0.78	-2.7
2,804,852	+		Sama_2337	0.82	-0.9
2,804,869	+		Sama_2337	0.83	-2.2
2,804,869	+		Sama_2337	0.83	-0.4
2,804,869	+		Sama_2337	0.83	-1.4
2,804,869	+		Sama_2337	0.83	-2.7
2,804,869	+		Sama_2337	0.83	-1.5
2,804,869	+		Sama_2337	0.83	-2.4
2,804,893	-		Sama_2337	0.83	-0.9
2,804,917	-		Sama_2337	0.84	-0.9
2,804,944	+		Sama_2337	0.86	-2.7
2,805,051	+		Sama_2337	0.90	-0.7
2,805,052	-		Sama_2337	0.90	-1.6
2,805,063	+				-0.9
2,805,063	+				-0.9
2,805,063	+				-1.4
2,805,064	-				-0.7
2,805,064	-				-3.4
2,805,064	-				-1.5
2,805,066	+				-1.2
2,805,089	+				-1.7
2,805,089	+				-1.9
2,805,089	+				-1.5
2,805,089	+				-2.8
2,805,105	+				+0.6
2,805,105	+				-2.5
2,805,126	+				-1.9
2,805,126	+				-2.5
2,805,127	-				-1.5
2,805,136	-				-0.7
2,805,143	+				+0.1
2,805,143	+				-2.0
2,805,143	+				-0.0
2,805,143	+				-0.7
2,805,143	+				-3.0
2,805,143	+				-0.8
2,805,143	+				-2.4
2,805,143	+				-0.9
2,805,144	-				-3.0
2,805,147	+				-1.2
2,805,189	-				-2.7
2,805,189	-				-2.8
2,805,189	-				-1.7
2,805,276	+				-1.2
2,805,291	+				-1.0
2,805,300	+				-3.2
2,805,337	-				-3.2
2,805,338	+				-0.7
2,805,339	-				-1.3
2,805,355	-				-0.3
2,805,355	-				+0.1
2,805,490	+		Sama_2338	0.19	-0.1
2,805,490	+		Sama_2338	0.19	+0.5
2,805,490	+		Sama_2338	0.19	-0.4
2,805,491	-		Sama_2338	0.19	+0.6
2,805,491	-		Sama_2338	0.19	+0.1
2,805,495	-		Sama_2338	0.20	-0.3
2,805,508	+		Sama_2338	0.23	+1.6
2,805,509	-		Sama_2338	0.23	+1.1
2,805,547	+		Sama_2338	0.31	-0.4
2,805,547	+		Sama_2338	0.31	-0.1
2,805,717	-		Sama_2338	0.66	+2.5
2,805,725	+		Sama_2338	0.68	+1.6
2,805,725	+		Sama_2338	0.68	+0.1
2,805,726	-		Sama_2338	0.68	+2.0
2,805,759	+		Sama_2338	0.75	+0.6
2,805,759	+		Sama_2338	0.75	-0.7
2,805,876	-				+1.8
2,805,878	+				+2.1
2,805,882	+				-0.1
2,805,883	-				+1.2
2,805,932	+				-1.9
2,805,959	-				+0.5
2,806,001	+		Sama_2339	0.12	-2.3
2,806,003	+		Sama_2339	0.13	-2.1
2,806,041	+		Sama_2339	0.20	-2.1
2,806,041	+		Sama_2339	0.20	-1.9
2,806,042	-		Sama_2339	0.20	+3.9
2,806,042	-		Sama_2339	0.20	-0.5
2,806,042	-		Sama_2339	0.20	+1.6
2,806,087	+		Sama_2339	0.28	+1.4
2,806,087	+		Sama_2339	0.28	+0.2
2,806,089	+		Sama_2339	0.28	+1.0
2,806,090	-		Sama_2339	0.28	+0.6
2,806,104	+		Sama_2339	0.31	+0.6
2,806,105	-		Sama_2339	0.31	+0.9
2,806,109	-		Sama_2339	0.32	+1.1
2,806,109	-		Sama_2339	0.32	+0.4
2,806,187	+		Sama_2339	0.46	+2.4
2,806,217	+		Sama_2339	0.51	+0.1
2,806,217	+		Sama_2339	0.51	+0.2
2,806,217	+		Sama_2339	0.51	-0.5
2,806,286	+		Sama_2339	0.64	+0.5
2,806,287	-		Sama_2339	0.64	-0.9
2,806,287	-		Sama_2339	0.64	-1.7
2,806,287	-		Sama_2339	0.64	+0.8
2,806,287	-		Sama_2339	0.64	-0.2