Strain Fitness in Shewanella amazonensis SB2B around Sama_2328

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,792,731	+				+0.7
2,792,731	+				-1.1
2,792,731	+				-0.1
2,792,731	+				-2.2
2,792,815	+				+1.9
2,792,816	-				+1.2
2,792,820	+				+0.1
2,792,833	-				+2.3
2,792,833	-				-1.4
2,792,845	+				+1.4
2,792,845	+				-0.1
2,792,845	+				+2.4
2,792,845	+				+0.9
2,792,845	+				-1.7
2,792,846	-				-0.7
2,792,846	-				+0.2
2,792,846	-				+1.3
2,792,846	-				+0.8
2,792,846	-				-0.9
2,792,846	-				+0.7
2,792,846	-				+2.3
2,792,846	-				-0.7
2,792,982	+				+0.1
2,792,982	+				-0.9
2,792,982	+				-0.9
2,792,983	-				+0.5
2,792,983	-				+0.5
2,792,984	+				+0.2
2,792,984	+				+1.5
2,792,984	+				-1.3
2,792,984	+				-0.8
2,792,984	+				-0.4
2,792,984	+				+0.4
2,792,984	+				+3.2
2,792,985	-				+0.7
2,792,985	-				-0.7
2,792,996	+				+0.5
2,792,996	+				+2.1
2,792,997	-				+0.1
2,792,997	-				+1.9
2,792,997	-				-1.2
2,793,037	+				+0.6
2,793,037	+				+1.6
2,793,037	+				-1.5
2,793,037	+				-1.1
2,793,038	-				-1.4
2,793,038	-				-1.4
2,793,038	-				+2.2
2,793,038	-				-0.5
2,793,038	-				+1.5
2,793,038	-				+0.6
2,793,040	+				-1.7
2,793,040	+				+3.0
2,793,040	+				-0.7
2,793,040	+				+1.1
2,793,040	+				+0.6
2,793,041	-				-2.7
2,793,041	-				-0.0
2,793,041	-				-0.0
2,793,041	-				-0.9
2,793,041	-				-1.7
2,793,041	-				-0.3
2,793,041	-				-1.7
2,793,041	-				-1.5
2,793,041	-				+0.5
2,793,041	-				+0.1
2,793,041	-				-0.2
2,793,041	-				-2.3
2,793,083	+				+2.6
2,793,084	-				+0.9
2,793,093	+				-1.9
2,793,094	-				-0.2
2,793,094	-				+1.7
2,793,094	-				-1.5
2,793,168	+				+1.6
2,793,168	+				-1.0
2,793,169	-				+1.3
2,793,172	+				+1.1
2,793,172	+				+0.3
2,793,173	-				-1.4
2,793,173	-				+0.6
2,793,173	-				+2.8
2,793,202	+				+0.6
2,793,203	-				+2.2
2,793,243	-				+1.8
2,793,243	-				-0.6
2,793,243	-				+3.1
2,793,247	-				+1.5
2,793,247	-				-1.9
2,793,247	-				-1.9
2,793,278	-				-1.6
2,793,278	-				+1.4
2,793,278	-				+0.2
2,793,323	-				-0.2
2,793,333	+				+0.1
2,793,334	-				-0.5
2,793,334	-				+1.2
2,793,334	-				-0.7
2,793,334	-				-1.4
2,793,335	+				-2.7
2,793,335	+				+0.6
2,793,335	+				-1.4
2,793,336	-				+1.6
2,793,336	-				-0.8
2,793,336	-				-3.3
2,793,336	-				-2.1
2,793,336	-				+3.6
2,793,336	-				-1.9
2,793,336	-				-0.8
2,793,336	-				-1.3
2,793,336	-				-1.4
2,793,369	+				+0.9
2,793,407	+				-0.6
2,793,442	-				+1.6
2,793,442	-				+0.2
2,793,496	+				-1.5
2,793,496	+				-0.7
2,793,496	+				+0.1
2,793,516	-				-1.5
2,793,516	-				+0.1
2,793,544	+				+1.3
2,793,544	+				+2.0
2,793,579	+				-1.4
2,793,634	-				-1.5
2,793,634	-				-1.2
2,793,649	+				+0.6
2,793,651	+				+0.1
2,793,655	-				-0.9
2,793,660	+				-0.2
2,793,747	+				-0.9
2,793,747	+				-2.5
2,793,748	-				-0.4
2,793,748	-				-2.3
2,793,775	-				-2.3
2,793,795	+				-2.4
2,793,795	+				-1.5
2,793,796	-				-1.5
2,793,865	-		Sama_2328	0.14	-0.4
2,793,870	+		Sama_2328	0.15	-0.7
2,793,871	-		Sama_2328	0.15	-2.2
2,793,927	-		Sama_2328	0.20	-1.2
2,793,932	+		Sama_2328	0.20	-3.3
2,793,932	+		Sama_2328	0.20	-2.9
2,793,932	+		Sama_2328	0.20	-3.1
2,793,933	-		Sama_2328	0.20	-1.9
2,793,934	+		Sama_2328	0.20	-1.7
2,793,934	+		Sama_2328	0.20	-0.9
2,793,934	+		Sama_2328	0.20	-2.2
2,793,934	+		Sama_2328	0.20	-1.2
2,793,935	-		Sama_2328	0.20	+0.1
2,793,935	-		Sama_2328	0.20	-0.9
2,793,967	+		Sama_2328	0.23	-2.8
2,793,967	+		Sama_2328	0.23	+0.6
2,793,969	+		Sama_2328	0.23	-1.5
2,793,969	+		Sama_2328	0.23	-2.9
2,793,969	+		Sama_2328	0.23	-3.1
2,793,969	+		Sama_2328	0.23	-1.8
2,793,969	+		Sama_2328	0.23	-2.3
2,793,970	-		Sama_2328	0.23	-1.7
2,793,970	-		Sama_2328	0.23	-2.2
2,794,009	+		Sama_2328	0.27	+0.6
2,794,009	+		Sama_2328	0.27	-4.5
2,794,010	-		Sama_2328	0.27	-1.9
2,794,013	+		Sama_2328	0.27	-2.3
2,794,014	-		Sama_2328	0.27	-0.7
2,794,019	+		Sama_2328	0.27	-2.4
2,794,019	+		Sama_2328	0.27	-3.4
2,794,019	+		Sama_2328	0.27	-0.9
2,794,020	-		Sama_2328	0.27	-0.9
2,794,028	-		Sama_2328	0.28	-1.4
2,794,089	+		Sama_2328	0.33	-0.7
2,794,089	+		Sama_2328	0.33	-1.2
2,794,089	+		Sama_2328	0.33	-0.7
2,794,095	+		Sama_2328	0.34	-2.4
2,794,096	-		Sama_2328	0.34	-2.5
2,794,096	-		Sama_2328	0.34	-2.3
2,794,096	-		Sama_2328	0.34	+0.1
2,794,096	-		Sama_2328	0.34	-1.8
2,794,096	-		Sama_2328	0.34	-2.7
2,794,195	+		Sama_2328	0.42	-0.9
2,794,195	+		Sama_2328	0.42	-2.5
2,794,195	+		Sama_2328	0.42	-2.5
2,794,196	-		Sama_2328	0.42	-1.4
2,794,196	-		Sama_2328	0.42	-0.4
2,794,196	-		Sama_2328	0.42	-1.4
2,794,279	+		Sama_2328	0.49	-1.2
2,794,280	-		Sama_2328	0.49	-2.3
2,794,312	+		Sama_2328	0.52	-0.9
2,794,312	+		Sama_2328	0.52	-2.1
2,794,312	+		Sama_2328	0.52	-1.8
2,794,312	+		Sama_2328	0.52	-1.4
2,794,312	+		Sama_2328	0.52	-1.7
2,794,313	-		Sama_2328	0.52	-1.9
2,794,329	+		Sama_2328	0.54	-0.9
2,794,330	-		Sama_2328	0.54	-2.7
2,794,330	-		Sama_2328	0.54	-2.4
2,794,401	+		Sama_2328	0.60	-1.8
2,794,401	+		Sama_2328	0.60	-1.9
2,794,402	-		Sama_2328	0.60	-0.4
2,794,402	-		Sama_2328	0.60	-1.8
2,794,420	+		Sama_2328	0.61	-1.9
2,794,420	+		Sama_2328	0.61	-1.9
2,794,420	+		Sama_2328	0.61	-2.4
2,794,420	+		Sama_2328	0.61	-2.1
2,794,421	-		Sama_2328	0.61	-1.8
2,794,421	-		Sama_2328	0.61	-2.7
2,794,425	+		Sama_2328	0.62	-1.7
2,794,426	-		Sama_2328	0.62	-2.4
2,794,493	-		Sama_2328	0.68	-1.7
2,794,493	-		Sama_2328	0.68	-1.2
2,794,505	+		Sama_2328	0.69	+1.6
2,794,505	+		Sama_2328	0.69	-2.7
2,794,506	-		Sama_2328	0.69	-3.5
2,794,721	+		Sama_2328	0.87	-0.8
2,794,722	-		Sama_2328	0.87	-2.9
2,794,853	-				-0.7
2,794,856	+				-2.7
2,794,856	+				+0.6
2,794,856	+				-2.4
2,794,867	+				-3.2
2,794,867	+				-1.7
2,794,867	+				-2.9
2,794,868	-				-1.8
2,794,915	+				-2.2
2,794,916	-				-2.4
2,794,924	+				-2.2
2,794,924	+				-2.4
2,794,924	+				-1.5
2,794,924	+				-2.8
2,794,924	+				-3.1
2,794,924	+				-3.5
2,794,924	+				-1.9
2,794,924	+				-3.1
2,794,925	-				-1.2
2,794,925	-				-3.3
2,794,925	-				-0.7
2,794,925	-				-1.7
2,794,926	+				+1.6
2,794,926	+				-1.8
2,794,927	-				-0.7
2,794,927	-				-1.2
2,794,927	-				-3.8
2,794,927	-				-3.3
2,794,990	+				-2.7
2,794,990	+				-1.5
2,794,990	+				-1.4
2,794,991	-				-2.7
2,795,002	+				+1.6
2,795,002	+				-0.7
2,795,002	+				-0.7
2,795,002	+				-2.7
2,795,034	+		Sama_2329	0.13	-2.2
2,795,035	-		Sama_2329	0.13	-0.4
2,795,035	-		Sama_2329	0.13	-2.2
2,795,120	+		Sama_2329	0.20	-3.6
2,795,121	-		Sama_2329	0.20	-2.4
2,795,121	-		Sama_2329	0.20	-2.1
2,795,210	+		Sama_2329	0.28	-2.2
2,795,211	-		Sama_2329	0.28	-0.9
2,795,211	-		Sama_2329	0.28	+0.3
2,795,228	-		Sama_2329	0.29	-2.4
2,795,228	-		Sama_2329	0.29	+0.6
2,795,237	+		Sama_2329	0.30	-2.2
2,795,237	+		Sama_2329	0.30	-3.0
2,795,237	+		Sama_2329	0.30	-1.5
2,795,348	+		Sama_2329	0.40	-1.5
2,795,466	+		Sama_2329	0.50	-2.8
2,795,467	-		Sama_2329	0.50	-0.7
2,795,467	-		Sama_2329	0.50	-1.5
2,795,469	+		Sama_2329	0.50	-2.9
2,795,469	+		Sama_2329	0.50	-3.5
2,795,469	+		Sama_2329	0.50	-3.0
2,795,528	+		Sama_2329	0.55	+0.1
2,795,555	+		Sama_2329	0.58	-1.2
2,795,556	-		Sama_2329	0.58	-1.2
2,795,620	+		Sama_2329	0.63	-2.8
2,795,621	-		Sama_2329	0.63	-2.3
2,795,661	-		Sama_2329	0.67	-2.3
2,795,675	+		Sama_2329	0.68	-1.5
2,795,675	+		Sama_2329	0.68	-0.9
2,795,676	-		Sama_2329	0.68	-2.5
2,795,676	-		Sama_2329	0.68	-1.9
2,795,676	-		Sama_2329	0.68	-1.5
2,795,678	+		Sama_2329	0.68	-3.0
2,795,678	+		Sama_2329	0.68	-0.4
2,795,679	-		Sama_2329	0.68	-2.1
2,795,679	-		Sama_2329	0.68	-2.3
2,795,716	+		Sama_2329	0.72	-0.7
2,795,724	+		Sama_2329	0.72	+0.6
2,795,724	+		Sama_2329	0.72	-1.5
2,795,725	-		Sama_2329	0.72	-2.7
2,795,768	-		Sama_2329	0.76	-3.7
2,795,768	-		Sama_2329	0.76	-2.5
2,795,808	+		Sama_2329	0.80	-2.8
2,795,809	-		Sama_2329	0.80	-0.9
2,795,809	-		Sama_2329	0.80	-2.9
2,795,819	+		Sama_2329	0.80	+0.6
2,795,819	+		Sama_2329	0.80	-0.9
2,795,820	-		Sama_2329	0.81	-1.9
2,795,820	-		Sama_2329	0.81	-1.5
2,795,872	+		Sama_2329	0.85	-1.2