Strain Fitness in Shewanella amazonensis SB2B around Sama_2324

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,787,018	+		Sama_2322	0.35	-3.4
2,787,018	+		Sama_2322	0.35	-1.9
2,787,018	+		Sama_2322	0.35	+0.1
2,787,155	+		Sama_2322	0.76	-1.1
2,787,210	+				-1.1
2,787,210	+				-0.4
2,787,213	-				+0.0
2,787,279	+				+1.2
2,787,304	-				-1.2
2,787,304	-				-1.2
2,787,306	+				+0.1
2,787,306	+				+1.6
2,787,306	+				+0.1
2,787,306	+				+0.5
2,787,309	+				-1.2
2,787,582	+		Sama_2323	0.55	-0.4
2,787,583	-		Sama_2323	0.55	-2.4
2,787,591	+		Sama_2323	0.57	-1.4
2,787,592	-		Sama_2323	0.57	-2.2
2,787,613	+		Sama_2323	0.62	-2.6
2,787,613	+		Sama_2323	0.62	-2.3
2,787,613	+		Sama_2323	0.62	-1.8
2,787,614	-		Sama_2323	0.62	-1.7
2,787,614	-		Sama_2323	0.62	+6.4
2,787,687	+		Sama_2323	0.79	-1.2
2,787,688	-		Sama_2323	0.79	-2.5
2,787,693	+		Sama_2323	0.80	-1.7
2,787,693	+		Sama_2323	0.80	-1.4
2,787,693	+		Sama_2323	0.80	-1.4
2,787,694	-		Sama_2323	0.80	-1.4
2,787,694	-		Sama_2323	0.80	-2.8
2,787,715	+		Sama_2323	0.85	-0.7
2,787,715	+		Sama_2323	0.85	-1.8
2,787,716	-		Sama_2323	0.86	-1.2
2,787,720	-		Sama_2323	0.86	-2.9
2,787,728	-		Sama_2323	0.88	-2.4
2,787,733	+		Sama_2323	0.89	-0.9
2,787,751	+				-2.6
2,787,752	-				-3.0
2,787,752	-				-0.9
2,787,752	-				-1.2
2,787,792	+				+0.5
2,787,792	+				+0.9
2,787,792	+				+2.5
2,787,793	-				-1.1
2,787,793	-				-0.7
2,787,807	+				-0.9
2,787,833	+				+2.8
2,787,847	+				-2.4
2,787,848	-				+0.1
2,787,849	+				-0.8
2,787,849	+				+0.9
2,787,849	+				-0.4
2,787,849	+				-1.3
2,787,849	+				-0.6
2,787,849	+				+2.6
2,787,850	-				+0.1
2,787,850	-				-0.4
2,787,913	-				-0.0
2,787,913	-				-0.5
2,787,919	-				-0.4
2,787,960	+		Sama_2324	0.11	-0.7
2,787,961	-		Sama_2324	0.11	-2.2
2,787,961	-		Sama_2324	0.11	+0.4
2,787,961	-		Sama_2324	0.11	-0.9
2,787,965	-		Sama_2324	0.12	-1.8
2,787,965	-		Sama_2324	0.12	-1.5
2,788,005	+		Sama_2324	0.21	-1.7
2,788,005	+		Sama_2324	0.21	-2.1
2,788,006	-		Sama_2324	0.21	-0.2
2,788,006	-		Sama_2324	0.21	-1.7
2,788,006	-		Sama_2324	0.21	-2.1
2,788,006	-		Sama_2324	0.21	-1.5
2,788,049	+		Sama_2324	0.30	-2.3
2,788,062	-		Sama_2324	0.33	-2.1
2,788,191	-		Sama_2324	0.61	-1.3
2,788,292	+		Sama_2324	0.84	-2.1
2,788,293	-		Sama_2324	0.84	-2.4
2,788,293	-		Sama_2324	0.84	+0.6
2,788,293	-		Sama_2324	0.84	-2.1
2,788,293	-		Sama_2324	0.84	-0.9
2,788,296	+		Sama_2324	0.84	-3.1
2,788,296	+		Sama_2324	0.84	-1.4
2,788,296	+		Sama_2324	0.84	-1.2
2,788,297	-		Sama_2324	0.85	-1.9
2,788,297	-		Sama_2324	0.85	-0.5
2,788,297	-		Sama_2324	0.85	-2.2
2,788,350	+				-2.8
2,788,350	+				-2.4
2,788,351	-				-3.2
2,788,351	-				-3.2
2,788,412	+				-2.4
2,788,412	+				-3.2
2,788,418	+				-1.4
2,788,418	+				-2.4
2,788,418	+				-2.9
2,788,418	+				-1.8
2,788,418	+				-0.4
2,788,418	+				-1.5
2,788,419	-				-2.8
2,788,419	-				-2.8
2,788,419	-				-2.1
2,788,419	-				-2.4
2,788,419	-				-3.3
2,788,423	+				-1.9
2,788,454	+		Sama_2325	0.14	-2.3
2,788,463	+		Sama_2325	0.16	-1.1
2,788,546	+		Sama_2325	0.29	-2.3
2,788,547	-		Sama_2325	0.29	-1.3
2,788,574	+		Sama_2325	0.33	-2.8
2,788,574	+		Sama_2325	0.33	-1.3
2,788,574	+		Sama_2325	0.33	+0.8
2,788,575	-		Sama_2325	0.33	-0.7
2,788,575	-		Sama_2325	0.33	-1.8
2,788,660	-		Sama_2325	0.47	-0.9
2,788,693	+		Sama_2325	0.52	-0.9
2,788,694	-		Sama_2325	0.52	-2.1
2,788,694	-		Sama_2325	0.52	-3.1
2,788,694	-		Sama_2325	0.52	-2.3
2,788,699	-		Sama_2325	0.53	-1.9
2,788,703	+		Sama_2325	0.54	+0.3
2,788,738	+		Sama_2325	0.59	-3.2
2,788,739	-		Sama_2325	0.59	-1.2
2,788,761	+		Sama_2325	0.63	-2.9
2,788,822	+		Sama_2325	0.73	-2.4
2,788,823	-		Sama_2325	0.73	+0.1
2,788,823	-		Sama_2325	0.73	-3.5
2,788,823	-		Sama_2325	0.73	-2.5
2,788,840	+		Sama_2325	0.75	-0.9
2,788,840	+		Sama_2325	0.75	-1.4
2,788,841	-		Sama_2325	0.76	+0.3
2,788,853	-		Sama_2325	0.77	-1.4
2,788,853	-		Sama_2325	0.77	-2.1
2,788,853	-		Sama_2325	0.77	-1.9
2,788,912	+		Sama_2325	0.87	-2.4
2,788,913	-		Sama_2325	0.87	-2.2
2,788,913	-		Sama_2325	0.87	+0.1
2,788,913	-		Sama_2325	0.87	-1.9
2,788,916	-		Sama_2325	0.87	-2.9
2,788,996	-				-2.4
2,789,024	+				-0.1
2,789,025	-				+0.4
2,789,025	-				-0.4
2,789,061	-				-1.5
2,789,069	-				-1.6
2,789,069	-				-0.4
2,789,088	-				+0.8
2,789,093	-				-3.1
2,789,093	-				-1.5
2,789,093	-				-1.7
2,789,093	-				-0.9
2,789,150	+				-0.0
2,789,157	+				+0.4
2,789,202	+				-0.5
2,789,202	+				+1.5
2,789,202	+				+0.1
2,789,203	-				-1.5
2,789,203	-				-3.1
2,789,203	-				-1.4
2,789,281	-				-2.3
2,789,291	+				-3.2
2,789,291	+				-2.4
2,789,292	-				-2.4
2,789,306	+				-2.8
2,789,306	+				-3.1