Strain Fitness in Shewanella amazonensis SB2B around Sama_2318

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,782,461	+	flgD	Sama_2316	0.24	-1.4
2,782,461	+	flgD	Sama_2316	0.24	-0.9
2,782,461	+	flgD	Sama_2316	0.24	-1.9
2,782,462	-	flgD	Sama_2316	0.24	-3.4
2,782,462	-	flgD	Sama_2316	0.24	-1.5
2,782,462	-	flgD	Sama_2316	0.24	-0.9
2,782,462	-	flgD	Sama_2316	0.24	-3.4
2,782,462	-	flgD	Sama_2316	0.24	-1.2
2,782,462	-	flgD	Sama_2316	0.24	-2.8
2,782,462	-	flgD	Sama_2316	0.24	-2.7
2,782,465	+	flgD	Sama_2316	0.24	-1.7
2,782,466	-	flgD	Sama_2316	0.24	-2.3
2,782,466	-	flgD	Sama_2316	0.24	-1.2
2,782,653	-	flgD	Sama_2316	0.50	-2.9
2,782,653	-	flgD	Sama_2316	0.50	-2.3
2,782,653	-	flgD	Sama_2316	0.50	-1.7
2,782,653	-	flgD	Sama_2316	0.50	-2.7
2,782,653	-	flgD	Sama_2316	0.50	-2.1
2,782,653	-	flgD	Sama_2316	0.50	-1.9
2,782,653	-	flgD	Sama_2316	0.50	-2.5
2,782,653	-	flgD	Sama_2316	0.50	-0.6
2,782,653	-	flgD	Sama_2316	0.50	-2.8
2,782,680	-	flgD	Sama_2316	0.54	-1.8
2,782,680	-	flgD	Sama_2316	0.54	-1.2
2,782,680	-	flgD	Sama_2316	0.54	-1.7
2,782,736	-	flgD	Sama_2316	0.61	-2.3
2,782,736	-	flgD	Sama_2316	0.61	-1.4
2,783,000	-				-1.4
2,783,006	-				-3.8
2,783,022	+				-2.5
2,783,023	-				-1.2
2,783,077	-				-1.4
2,783,077	-				-0.7
2,783,077	-				-0.9
2,783,178	+	flgC	Sama_2317	0.32	-0.9
2,783,217	-	flgC	Sama_2317	0.42	-3.3
2,783,235	+	flgC	Sama_2317	0.46	-2.7
2,783,236	-	flgC	Sama_2317	0.46	-1.8
2,783,248	+	flgC	Sama_2317	0.49	-1.4
2,783,248	+	flgC	Sama_2317	0.49	-0.9
2,783,249	-	flgC	Sama_2317	0.50	-3.1
2,783,334	-	flgC	Sama_2317	0.70	-3.4
2,783,446	-				-0.9
2,783,472	-				-0.2
2,783,474	+				-0.9
2,783,487	-				-2.4
2,783,547	-	flgB	Sama_2318	0.22	-1.2
2,783,547	-	flgB	Sama_2318	0.22	-2.7
2,783,582	+	flgB	Sama_2318	0.31	-0.9
2,783,582	+	flgB	Sama_2318	0.31	-2.5
2,783,583	-	flgB	Sama_2318	0.31	-0.4
2,783,583	-	flgB	Sama_2318	0.31	-3.6
2,783,583	-	flgB	Sama_2318	0.31	-2.3
2,783,745	-	flgB	Sama_2318	0.71	-2.2
2,783,745	-	flgB	Sama_2318	0.71	-0.4
2,783,747	-	flgB	Sama_2318	0.72	-2.2
2,783,747	-	flgB	Sama_2318	0.72	-3.7
2,783,928	-				+1.6
2,783,928	-				+1.1
2,783,928	-				+0.3
2,784,020	-				+1.3
2,784,071	+				-2.1
2,784,071	+				-0.7
2,784,072	-				+0.2
2,784,072	-				-1.0
2,784,136	-		Sama_2319	0.16	-0.9
2,784,164	-		Sama_2319	0.20	-3.2
2,784,200	+		Sama_2319	0.24	-0.9
2,784,214	+		Sama_2319	0.26	-0.4
2,784,215	-		Sama_2319	0.26	-0.2
2,784,215	-		Sama_2319	0.26	-2.9
2,784,230	+		Sama_2319	0.28	-1.9
2,784,230	+		Sama_2319	0.28	-1.7
2,784,230	+		Sama_2319	0.28	+1.3
2,784,230	+		Sama_2319	0.28	+2.3
2,784,231	-		Sama_2319	0.28	+0.3
2,784,231	-		Sama_2319	0.28	-0.9
2,784,231	-		Sama_2319	0.28	+0.2
2,784,231	-		Sama_2319	0.28	-0.4
2,784,231	-		Sama_2319	0.28	-0.6
2,784,231	-		Sama_2319	0.28	+0.5
2,784,231	-		Sama_2319	0.28	-0.9
2,784,231	-		Sama_2319	0.28	+0.5
2,784,270	+		Sama_2319	0.32	+2.3
2,784,279	-		Sama_2319	0.33	+0.4
2,784,356	-		Sama_2319	0.43	+1.4
2,784,356	-		Sama_2319	0.43	-0.5
2,784,368	+		Sama_2319	0.44	-0.7
2,784,368	+		Sama_2319	0.44	+0.9
2,784,368	+		Sama_2319	0.44	+1.1
2,784,479	-		Sama_2319	0.57	+2.2
2,784,541	+		Sama_2319	0.65	-0.9
2,784,542	-		Sama_2319	0.65	-1.4
2,784,542	-		Sama_2319	0.65	-0.8
2,784,580	+		Sama_2319	0.70	+2.3
2,784,580	+		Sama_2319	0.70	-0.6
2,784,580	+		Sama_2319	0.70	+0.5
2,784,581	-		Sama_2319	0.70	-2.8
2,784,581	-		Sama_2319	0.70	-0.9
2,784,584	+		Sama_2319	0.70	-1.1
2,784,672	-		Sama_2319	0.81	-0.4
2,784,700	+		Sama_2319	0.84	-0.5
2,784,701	-		Sama_2319	0.84	+1.2
2,784,701	-		Sama_2319	0.84	+0.9
2,784,701	-		Sama_2319	0.84	-0.6
2,784,740	-		Sama_2319	0.89	+1.6
2,784,740	-		Sama_2319	0.89	-1.8
2,784,740	-		Sama_2319	0.89	-0.6
2,784,801	-				-2.8
2,784,801	-				+1.4
2,784,856	-				+2.0