Strain Fitness in Shewanella amazonensis SB2B around Sama_2309

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,773,389	+	flgL	Sama_2308	0.25	-1.4
2,773,417	-	flgL	Sama_2308	0.27	-2.5
2,773,419	+	flgL	Sama_2308	0.27	-2.2
2,773,420	-	flgL	Sama_2308	0.27	-1.7
2,773,420	-	flgL	Sama_2308	0.27	+0.6
2,773,464	+	flgL	Sama_2308	0.31	-2.4
2,773,465	-	flgL	Sama_2308	0.31	-1.8
2,773,465	-	flgL	Sama_2308	0.31	-2.3
2,773,465	-	flgL	Sama_2308	0.31	-1.2
2,773,504	+	flgL	Sama_2308	0.34	-1.8
2,773,620	+	flgL	Sama_2308	0.44	-1.4
2,773,626	+	flgL	Sama_2308	0.44	-2.7
2,773,627	-	flgL	Sama_2308	0.45	+7.4
2,773,627	-	flgL	Sama_2308	0.45	-2.4
2,773,628	+	flgL	Sama_2308	0.45	-0.7
2,773,628	+	flgL	Sama_2308	0.45	-2.8
2,773,628	+	flgL	Sama_2308	0.45	-0.4
2,773,628	+	flgL	Sama_2308	0.45	-1.5
2,773,628	+	flgL	Sama_2308	0.45	+0.6
2,773,629	-	flgL	Sama_2308	0.45	-3.5
2,773,629	-	flgL	Sama_2308	0.45	-3.0
2,773,717	-	flgL	Sama_2308	0.52	-2.7
2,773,717	-	flgL	Sama_2308	0.52	-1.2
2,773,747	-	flgL	Sama_2308	0.54	-2.6
2,773,747	-	flgL	Sama_2308	0.54	-2.6
2,773,829	+	flgL	Sama_2308	0.61	-3.2
2,773,829	+	flgL	Sama_2308	0.61	-1.7
2,773,830	-	flgL	Sama_2308	0.61	+0.1
2,773,830	-	flgL	Sama_2308	0.61	-1.2
2,773,830	-	flgL	Sama_2308	0.61	-0.7
2,773,893	+	flgL	Sama_2308	0.67	-0.7
2,773,893	+	flgL	Sama_2308	0.67	-1.8
2,773,894	-	flgL	Sama_2308	0.67	-0.7
2,773,894	-	flgL	Sama_2308	0.67	-2.8
2,774,003	-	flgL	Sama_2308	0.76	-2.5
2,774,062	-	flgL	Sama_2308	0.81	-1.2
2,774,078	-	flgL	Sama_2308	0.82	-1.8
2,774,184	+				-3.4
2,774,185	-				+1.6
2,774,185	-				-0.9
2,774,185	-				-1.9
2,774,185	-				-3.5
2,774,248	+				-1.8
2,774,248	+				-2.7
2,774,249	-				-0.9
2,774,249	-				+0.1
2,774,254	-				-0.4
2,774,254	-				-0.7
2,774,254	-				-1.2
2,774,254	-				-1.2
2,774,284	-				-1.2
2,774,289	+				-1.4
2,774,290	-				-1.9
2,774,290	-				-0.9
2,774,379	-				-0.4
2,774,454	-				-1.7
2,774,633	+		Sama_2309	0.17	-1.7
2,774,634	-		Sama_2309	0.17	-0.4
2,774,709	+		Sama_2309	0.21	-1.8
2,774,709	+		Sama_2309	0.21	-1.2
2,774,709	+		Sama_2309	0.21	-2.3
2,774,710	-		Sama_2309	0.21	-2.4
2,774,710	-		Sama_2309	0.21	-1.8
2,774,710	-		Sama_2309	0.21	-1.7
2,774,771	+		Sama_2309	0.24	-3.2
2,774,771	+		Sama_2309	0.24	-1.2
2,774,772	-		Sama_2309	0.24	-1.9
2,774,772	-		Sama_2309	0.24	-1.8
2,774,772	-		Sama_2309	0.24	-3.1
2,774,775	+		Sama_2309	0.24	-1.5
2,774,776	-		Sama_2309	0.24	-2.8
2,774,776	-		Sama_2309	0.24	-2.5
2,774,788	-		Sama_2309	0.25	-1.7
2,774,788	-		Sama_2309	0.25	-1.2
2,774,851	-		Sama_2309	0.28	-1.2
2,774,857	-		Sama_2309	0.29	-0.9
2,774,862	+		Sama_2309	0.29	-2.5
2,775,031	-		Sama_2309	0.38	-0.9
2,775,064	+		Sama_2309	0.39	+0.1
2,775,064	+		Sama_2309	0.39	+0.1
2,775,064	+		Sama_2309	0.39	-1.2
2,775,065	-		Sama_2309	0.39	-0.7
2,775,065	-		Sama_2309	0.39	-2.2
2,775,065	-		Sama_2309	0.39	-1.4
2,775,110	+		Sama_2309	0.42	-2.7
2,775,129	-		Sama_2309	0.43	-0.4
2,775,129	-		Sama_2309	0.43	-0.7
2,775,129	-		Sama_2309	0.43	-1.8
2,775,172	+		Sama_2309	0.45	-1.3
2,775,172	+		Sama_2309	0.45	-0.9
2,775,172	+		Sama_2309	0.45	-0.9
2,775,173	-		Sama_2309	0.45	+1.0
2,775,173	-		Sama_2309	0.45	-2.8
2,775,173	-		Sama_2309	0.45	-1.2
2,775,202	-		Sama_2309	0.47	-1.5
2,775,315	+		Sama_2309	0.53	-2.6
2,775,379	-		Sama_2309	0.56	-3.4
2,775,392	+		Sama_2309	0.57	-2.1
2,775,513	+		Sama_2309	0.63	-1.7
2,775,584	-		Sama_2309	0.67	+0.1
2,775,603	-		Sama_2309	0.68	-3.1
2,775,603	-		Sama_2309	0.68	-1.7
2,775,644	-		Sama_2309	0.70	-1.7
2,775,644	-		Sama_2309	0.70	-0.7
2,775,885	+		Sama_2309	0.82	-1.8
2,775,886	-		Sama_2309	0.82	-2.4
2,775,906	+		Sama_2309	0.83	-1.2
2,775,916	+		Sama_2309	0.84	-3.3
2,776,014	-		Sama_2309	0.89	-2.2
2,776,023	-		Sama_2309	0.89	-2.4
2,776,046	+				-4.1
2,776,046	+				-1.5
2,776,046	+				-2.7
2,776,047	-				-2.4
2,776,047	-				-2.2
2,776,047	-				-3.4
2,776,061	+				+0.1
2,776,062	-				-0.4
2,776,121	+				-2.2
2,776,121	+				+0.6
2,776,122	-				-2.7
2,776,122	-				+1.6
2,776,131	+				-1.9
2,776,152	+				-1.9
2,776,211	-				-2.4
2,776,211	-				-2.1
2,776,217	-				+0.1
2,776,282	+				-1.5
2,776,295	-				+0.2
2,776,316	+				-1.4
2,776,400	+	flgJ	Sama_2310	0.14	+0.6
2,776,572	+	flgJ	Sama_2310	0.29	-1.8
2,776,573	-	flgJ	Sama_2310	0.29	-1.9
2,776,663	-	flgJ	Sama_2310	0.37	-1.6
2,776,711	-	flgJ	Sama_2310	0.42	+0.1
2,776,801	+	flgJ	Sama_2310	0.50	-2.6
2,776,802	-	flgJ	Sama_2310	0.50	-0.4
2,776,803	+	flgJ	Sama_2310	0.50	-0.6
2,776,803	+	flgJ	Sama_2310	0.50	-0.9
2,776,803	+	flgJ	Sama_2310	0.50	+1.6
2,776,803	+	flgJ	Sama_2310	0.50	-2.2
2,776,804	-	flgJ	Sama_2310	0.50	-0.9
2,776,804	-	flgJ	Sama_2310	0.50	-2.1
2,776,804	-	flgJ	Sama_2310	0.50	-2.2
2,776,890	+	flgJ	Sama_2310	0.58	-2.5
2,776,890	+	flgJ	Sama_2310	0.58	-0.9
2,776,891	-	flgJ	Sama_2310	0.58	-1.7
2,776,891	-	flgJ	Sama_2310	0.58	+0.3
2,776,891	-	flgJ	Sama_2310	0.58	+1.6
2,776,891	-	flgJ	Sama_2310	0.58	-2.5
2,776,891	-	flgJ	Sama_2310	0.58	-2.3
2,777,032	+	flgJ	Sama_2310	0.70	-0.9
2,777,165	+	flgJ	Sama_2310	0.82	+1.6
2,777,166	-	flgJ	Sama_2310	0.82	-2.4
2,777,166	-	flgJ	Sama_2310	0.82	-2.4
2,777,166	-	flgJ	Sama_2310	0.82	-0.7
2,777,166	-	flgJ	Sama_2310	0.82	-1.5