Strain Fitness in Shewanella amazonensis SB2B around Sama_2308

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,772,175	-				-1.8
2,772,175	-				+0.6
2,772,251	+				+0.3
2,772,304	+		Sama_2307	0.16	+0.2
2,772,356	-		Sama_2307	0.22	+0.6
2,772,356	-		Sama_2307	0.22	+0.9
2,772,356	-		Sama_2307	0.22	-0.8
2,772,356	-		Sama_2307	0.22	+1.9
2,772,463	+		Sama_2307	0.35	-1.9
2,772,464	-		Sama_2307	0.35	+1.3
2,772,464	-		Sama_2307	0.35	-1.4
2,772,464	-		Sama_2307	0.35	-0.1
2,772,464	-		Sama_2307	0.35	+0.8
2,772,464	-		Sama_2307	0.35	+0.8
2,772,464	-		Sama_2307	0.35	+0.6
2,772,467	+		Sama_2307	0.35	-1.7
2,772,467	+		Sama_2307	0.35	-0.4
2,772,467	+		Sama_2307	0.35	-1.1
2,772,468	-		Sama_2307	0.36	-1.4
2,772,468	-		Sama_2307	0.36	+1.8
2,772,468	-		Sama_2307	0.36	-1.4
2,772,468	-		Sama_2307	0.36	-0.8
2,772,468	-		Sama_2307	0.36	+1.8
2,772,468	-		Sama_2307	0.36	+0.6
2,772,468	-		Sama_2307	0.36	-0.7
2,772,473	+		Sama_2307	0.36	-0.6
2,772,474	-		Sama_2307	0.36	+0.1
2,772,474	-		Sama_2307	0.36	+0.6
2,772,474	-		Sama_2307	0.36	-2.6
2,772,474	-		Sama_2307	0.36	+0.5
2,772,520	+		Sama_2307	0.42	-2.0
2,772,521	-		Sama_2307	0.42	-0.7
2,772,521	-		Sama_2307	0.42	-2.1
2,772,524	-		Sama_2307	0.42	+1.4
2,772,524	-		Sama_2307	0.42	+1.3
2,772,599	-		Sama_2307	0.51	-0.7
2,772,599	-		Sama_2307	0.51	+0.6
2,772,617	-		Sama_2307	0.54	-0.2
2,772,617	-		Sama_2307	0.54	-2.3
2,772,785	-		Sama_2307	0.74	+0.3
2,772,799	+		Sama_2307	0.76	-1.9
2,772,800	-		Sama_2307	0.76	-1.4
2,772,800	-		Sama_2307	0.76	-2.3
2,772,980	-				+0.1
2,772,983	-				+0.4
2,772,983	-				-0.9
2,772,983	-				-0.7
2,772,988	+				+1.6
2,772,989	-				+1.3
2,772,989	-				-0.7
2,772,991	+				+0.8
2,772,992	-				-1.6
2,773,014	+				+0.2
2,773,014	+				-0.0
2,773,014	+				+1.1
2,773,014	+				-2.3
2,773,015	-				+2.4
2,773,015	-				-2.8
2,773,015	-				-3.4
2,773,015	-				-1.5
2,773,015	-				+1.3
2,773,015	-				+0.1
2,773,020	+				-2.1
2,773,049	+				-0.7
2,773,049	+				+0.6
2,773,050	-				+0.4
2,773,050	-				-0.7
2,773,053	+				-1.8
2,773,091	+				-1.8
2,773,097	+				-2.2
2,773,129	-				-3.1
2,773,194	-				+0.1
2,773,263	-	flgL	Sama_2308	0.14	-2.8
2,773,285	-	flgL	Sama_2308	0.16	-3.2
2,773,287	+	flgL	Sama_2308	0.16	-0.7
2,773,287	+	flgL	Sama_2308	0.16	-3.1
2,773,288	-	flgL	Sama_2308	0.16	-2.6
2,773,288	-	flgL	Sama_2308	0.16	-2.4
2,773,389	+	flgL	Sama_2308	0.25	-1.4
2,773,417	-	flgL	Sama_2308	0.27	-2.5
2,773,419	+	flgL	Sama_2308	0.27	-2.2
2,773,420	-	flgL	Sama_2308	0.27	-1.7
2,773,420	-	flgL	Sama_2308	0.27	+0.6
2,773,464	+	flgL	Sama_2308	0.31	-2.4
2,773,465	-	flgL	Sama_2308	0.31	-1.8
2,773,465	-	flgL	Sama_2308	0.31	-2.3
2,773,465	-	flgL	Sama_2308	0.31	-1.2
2,773,504	+	flgL	Sama_2308	0.34	-1.8
2,773,620	+	flgL	Sama_2308	0.44	-1.4
2,773,626	+	flgL	Sama_2308	0.44	-2.7
2,773,627	-	flgL	Sama_2308	0.45	+7.4
2,773,627	-	flgL	Sama_2308	0.45	-2.4
2,773,628	+	flgL	Sama_2308	0.45	-0.7
2,773,628	+	flgL	Sama_2308	0.45	-2.8
2,773,628	+	flgL	Sama_2308	0.45	-0.4
2,773,628	+	flgL	Sama_2308	0.45	-1.5
2,773,628	+	flgL	Sama_2308	0.45	+0.6
2,773,629	-	flgL	Sama_2308	0.45	-3.5
2,773,629	-	flgL	Sama_2308	0.45	-3.0
2,773,717	-	flgL	Sama_2308	0.52	-2.7
2,773,717	-	flgL	Sama_2308	0.52	-1.2
2,773,747	-	flgL	Sama_2308	0.54	-2.6
2,773,747	-	flgL	Sama_2308	0.54	-2.6
2,773,829	+	flgL	Sama_2308	0.61	-3.2
2,773,829	+	flgL	Sama_2308	0.61	-1.7
2,773,830	-	flgL	Sama_2308	0.61	+0.1
2,773,830	-	flgL	Sama_2308	0.61	-1.2
2,773,830	-	flgL	Sama_2308	0.61	-0.7
2,773,893	+	flgL	Sama_2308	0.67	-0.7
2,773,893	+	flgL	Sama_2308	0.67	-1.8
2,773,894	-	flgL	Sama_2308	0.67	-0.7
2,773,894	-	flgL	Sama_2308	0.67	-2.8
2,774,003	-	flgL	Sama_2308	0.76	-2.5
2,774,062	-	flgL	Sama_2308	0.81	-1.2
2,774,078	-	flgL	Sama_2308	0.82	-1.8
2,774,184	+				-3.4
2,774,185	-				+1.6
2,774,185	-				-0.9
2,774,185	-				-1.9
2,774,185	-				-3.5
2,774,248	+				-1.8
2,774,248	+				-2.7
2,774,249	-				-0.9
2,774,249	-				+0.1
2,774,254	-				-0.4
2,774,254	-				-0.7
2,774,254	-				-1.2
2,774,254	-				-1.2
2,774,284	-				-1.2
2,774,289	+				-1.4
2,774,290	-				-1.9
2,774,290	-				-0.9
2,774,379	-				-0.4
2,774,454	-				-1.7
2,774,633	+		Sama_2309	0.17	-1.7
2,774,634	-		Sama_2309	0.17	-0.4
2,774,709	+		Sama_2309	0.21	-1.8
2,774,709	+		Sama_2309	0.21	-1.2
2,774,709	+		Sama_2309	0.21	-2.3
2,774,710	-		Sama_2309	0.21	-2.4
2,774,710	-		Sama_2309	0.21	-1.8
2,774,710	-		Sama_2309	0.21	-1.7
2,774,771	+		Sama_2309	0.24	-3.2
2,774,771	+		Sama_2309	0.24	-1.2
2,774,772	-		Sama_2309	0.24	-1.9
2,774,772	-		Sama_2309	0.24	-1.8
2,774,772	-		Sama_2309	0.24	-3.1
2,774,775	+		Sama_2309	0.24	-1.5
2,774,776	-		Sama_2309	0.24	-2.8
2,774,776	-		Sama_2309	0.24	-2.5
2,774,788	-		Sama_2309	0.25	-1.7
2,774,788	-		Sama_2309	0.25	-1.2
2,774,851	-		Sama_2309	0.28	-1.2
2,774,857	-		Sama_2309	0.29	-0.9
2,774,862	+		Sama_2309	0.29	-2.5
2,775,031	-		Sama_2309	0.38	-0.9
2,775,064	+		Sama_2309	0.39	+0.1
2,775,064	+		Sama_2309	0.39	+0.1
2,775,064	+		Sama_2309	0.39	-1.2
2,775,065	-		Sama_2309	0.39	-0.7
2,775,065	-		Sama_2309	0.39	-2.2
2,775,065	-		Sama_2309	0.39	-1.4
2,775,110	+		Sama_2309	0.42	-2.7
2,775,129	-		Sama_2309	0.43	-0.4
2,775,129	-		Sama_2309	0.43	-0.7
2,775,129	-		Sama_2309	0.43	-1.8
2,775,172	+		Sama_2309	0.45	-1.3
2,775,172	+		Sama_2309	0.45	-0.9
2,775,172	+		Sama_2309	0.45	-0.9
2,775,173	-		Sama_2309	0.45	+1.0
2,775,173	-		Sama_2309	0.45	-2.8
2,775,173	-		Sama_2309	0.45	-1.2
2,775,202	-		Sama_2309	0.47	-1.5