Strain Fitness in Shewanella amazonensis SB2B around Sama_2303

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,767,916	+		Sama_2301	0.85	-3.4
2,767,917	-		Sama_2301	0.85	-1.5
2,768,096	+				-1.5
2,768,097	-				-2.8
2,768,156	-				-2.2
2,768,169	-				-0.8
2,768,169	-				-0.4
2,768,173	-				+0.5
2,768,247	+				+0.1
2,768,252	+				-1.7
2,768,252	+				-1.7
2,768,252	+				-2.2
2,768,252	+				-2.0
2,768,252	+				-2.9
2,768,253	-				-2.1
2,768,253	-				-1.5
2,768,256	-				-3.5
2,768,286	-				-0.4
2,768,286	-				-2.1
2,768,313	-				-0.8
2,768,313	-				-0.1
2,768,360	-				-1.4
2,768,406	+				+0.8
2,768,447	+				-1.5
2,768,447	+				-1.4
2,768,447	+				-1.8
2,768,448	-				-0.7
2,768,448	-				-0.5
2,768,448	-				-1.4
2,768,448	-				+0.1
2,768,448	-				+1.6
2,768,448	-				-1.9
2,768,448	-				-2.0
2,768,448	-				-0.9
2,768,448	-				-2.9
2,768,448	-				-3.5
2,768,448	-				-2.4
2,768,448	-				-0.4
2,768,535	-	fliS	Sama_2302	0.28	-0.9
2,768,565	-	fliS	Sama_2302	0.36	-2.7
2,768,565	-	fliS	Sama_2302	0.36	-2.1
2,768,565	-	fliS	Sama_2302	0.36	-2.6
2,768,565	-	fliS	Sama_2302	0.36	-1.5
2,768,625	-	fliS	Sama_2302	0.50	-0.4
2,768,628	-	fliS	Sama_2302	0.51	-3.3
2,768,645	+	fliS	Sama_2302	0.55	-3.4
2,768,646	-	fliS	Sama_2302	0.55	-1.4
2,768,646	-	fliS	Sama_2302	0.55	-2.8
2,768,646	-	fliS	Sama_2302	0.55	-0.4
2,768,646	-	fliS	Sama_2302	0.55	-1.7
2,768,646	-	fliS	Sama_2302	0.55	-3.6
2,768,646	-	fliS	Sama_2302	0.55	-2.4
2,768,650	-	fliS	Sama_2302	0.56	-3.5
2,768,757	-	fliS	Sama_2302	0.82	-2.1
2,768,757	-	fliS	Sama_2302	0.82	-1.9
2,768,797	-				-1.5
2,768,797	-				-2.2
2,768,828	+				-2.2
2,768,829	-				-1.7
2,768,829	-				-0.9
2,768,829	-				-2.4
2,768,829	-				-0.7
2,768,829	-				-1.8
2,768,833	-				-0.7
2,768,833	-				-2.2
2,768,837	-				-1.2
2,768,837	-				-3.1
2,768,837	-				-1.7
2,768,837	-				-1.9
2,768,841	-				-1.2
2,768,885	+		Sama_2303	0.16	-0.9
2,768,902	-		Sama_2303	0.21	-2.4
2,768,902	-		Sama_2303	0.21	-1.9
2,768,954	+		Sama_2303	0.37	-2.4
2,768,955	-		Sama_2303	0.37	-1.9
2,768,955	-		Sama_2303	0.37	-3.4
2,768,955	-		Sama_2303	0.37	-1.7
2,768,981	-		Sama_2303	0.45	-3.5
2,769,155	+				-2.3
2,769,178	-				+0.5
2,769,178	-				+0.2
2,769,186	+				-0.1
2,769,195	-				-1.1
2,769,195	-				+0.2
2,769,278	-				-1.3
2,769,287	-				-2.8
2,769,366	+		Sama_2304	0.13	-2.9
2,769,366	+		Sama_2304	0.13	+0.1
2,769,367	-		Sama_2304	0.13	-1.0
2,769,367	-		Sama_2304	0.13	-0.7
2,769,367	-		Sama_2304	0.13	+0.1
2,769,390	-		Sama_2304	0.15	-1.9
2,769,390	-		Sama_2304	0.15	+0.6
2,769,390	-		Sama_2304	0.15	-2.4
2,769,390	-		Sama_2304	0.15	-2.4
2,769,408	+		Sama_2304	0.16	-2.8
2,769,408	+		Sama_2304	0.16	-2.1
2,769,409	-		Sama_2304	0.16	-0.4
2,769,409	-		Sama_2304	0.16	-0.4
2,769,409	-		Sama_2304	0.16	-1.4
2,769,448	+		Sama_2304	0.19	-2.5
2,769,497	-		Sama_2304	0.23	-2.4
2,769,503	-		Sama_2304	0.23	-2.1
2,769,587	-		Sama_2304	0.29	-1.4
2,769,613	+		Sama_2304	0.31	-1.2
2,769,673	+		Sama_2304	0.36	-2.3
2,769,714	-		Sama_2304	0.39	-1.4
2,769,714	-		Sama_2304	0.39	-2.6
2,769,714	-		Sama_2304	0.39	-1.7
2,769,725	-		Sama_2304	0.40	-3.6
2,769,726	+		Sama_2304	0.40	-0.9
2,769,727	-		Sama_2304	0.40	-0.4
2,769,745	+		Sama_2304	0.41	-0.7
2,769,746	-		Sama_2304	0.41	-1.8
2,769,781	+		Sama_2304	0.44	-0.9
2,769,781	+		Sama_2304	0.44	-2.1
2,769,782	-		Sama_2304	0.44	-1.7
2,769,782	-		Sama_2304	0.44	-0.7
2,769,782	-		Sama_2304	0.44	-0.7
2,769,791	-		Sama_2304	0.44	-0.4
2,769,794	+		Sama_2304	0.45	-1.8
2,769,795	-		Sama_2304	0.45	-2.6
2,769,795	-		Sama_2304	0.45	-2.3
2,769,795	-		Sama_2304	0.45	-2.9
2,769,891	+		Sama_2304	0.52	-2.4
2,769,940	+		Sama_2304	0.55	-2.8
2,769,953	+		Sama_2304	0.56	-2.4
2,769,954	-		Sama_2304	0.56	-3.1
2,769,970	+		Sama_2304	0.58	-1.8
2,769,970	+		Sama_2304	0.58	-2.3
2,770,026	-		Sama_2304	0.62	-1.4
2,770,075	+		Sama_2304	0.65	-2.2
2,770,076	-		Sama_2304	0.65	-2.9
2,770,094	-		Sama_2304	0.67	-2.8