Strain Fitness in Shewanella amazonensis SB2B around Sama_2294

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,757,917	+		Sama_2292	0.84	-1.9
2,758,066	+				-1.9
2,758,233	+				-2.7
2,758,233	+				-2.3
2,758,233	+				-2.3
2,758,233	+				-0.9
2,758,233	+				-1.5
2,758,234	-				-0.5
2,758,234	-				+1.1
2,758,234	-				+0.9
2,758,240	-				-1.1
2,758,286	+				+0.5
2,758,319	+				-0.3
2,758,328	+				+2.3
2,758,328	+				-1.9
2,758,329	-				-0.8
2,758,329	-				+0.4
2,758,429	-		Sama_2293	0.23	-0.9
2,758,534	+		Sama_2293	0.46	-2.7
2,758,534	+		Sama_2293	0.46	-3.4
2,758,534	+		Sama_2293	0.46	-1.2
2,758,557	+		Sama_2293	0.51	-1.4
2,758,557	+		Sama_2293	0.51	-1.8
2,758,577	+		Sama_2293	0.56	-1.8
2,758,578	-		Sama_2293	0.56	-2.1
2,758,578	-		Sama_2293	0.56	-2.1
2,758,580	+		Sama_2293	0.57	-0.7
2,758,581	-		Sama_2293	0.57	-2.6
2,758,626	+		Sama_2293	0.67	-1.2
2,758,626	+		Sama_2293	0.67	-1.8
2,758,626	+		Sama_2293	0.67	-2.4
2,758,626	+		Sama_2293	0.67	-2.1
2,758,627	-		Sama_2293	0.67	-2.5
2,758,627	-		Sama_2293	0.67	-1.7
2,758,627	-		Sama_2293	0.67	-3.1
2,758,627	-		Sama_2293	0.67	-1.9
2,758,627	-		Sama_2293	0.67	-0.4
2,758,627	-		Sama_2293	0.67	-3.7
2,758,628	+		Sama_2293	0.67	-1.7
2,758,628	+		Sama_2293	0.67	-2.4
2,758,628	+		Sama_2293	0.67	-3.2
2,758,629	-		Sama_2293	0.68	-0.7
2,758,779	-				-2.7
2,758,785	+				-2.9
2,758,786	-				-0.4
2,758,786	-				-0.2
2,758,786	-				-0.7
2,758,902	+				-0.7
2,758,902	+				-0.4
2,758,926	-	fliI	Sama_2294	0.11	-2.3
2,758,961	+	fliI	Sama_2294	0.14	-3.6
2,758,970	+	fliI	Sama_2294	0.14	-3.5
2,758,970	+	fliI	Sama_2294	0.14	-0.7
2,758,971	-	fliI	Sama_2294	0.14	-2.1
2,759,101	+	fliI	Sama_2294	0.24	-1.2
2,759,101	+	fliI	Sama_2294	0.24	-0.9
2,759,101	+	fliI	Sama_2294	0.24	-0.7
2,759,101	+	fliI	Sama_2294	0.24	-1.9
2,759,101	+	fliI	Sama_2294	0.24	-2.9
2,759,101	+	fliI	Sama_2294	0.24	+0.1
2,759,101	+	fliI	Sama_2294	0.24	-0.7
2,759,101	+	fliI	Sama_2294	0.24	-0.9
2,759,102	-	fliI	Sama_2294	0.24	-3.7
2,759,102	-	fliI	Sama_2294	0.24	-3.1
2,759,102	-	fliI	Sama_2294	0.24	-0.9
2,759,170	+	fliI	Sama_2294	0.29	-2.1
2,759,171	-	fliI	Sama_2294	0.29	-1.7
2,759,171	-	fliI	Sama_2294	0.29	-3.4
2,759,171	-	fliI	Sama_2294	0.29	-0.7
2,759,264	+	fliI	Sama_2294	0.36	-2.2
2,759,338	-	fliI	Sama_2294	0.42	-2.2
2,759,338	-	fliI	Sama_2294	0.42	-1.4
2,759,343	+	fliI	Sama_2294	0.42	-2.4
2,759,344	-	fliI	Sama_2294	0.42	-1.2
2,759,344	-	fliI	Sama_2294	0.42	-3.2
2,759,358	+	fliI	Sama_2294	0.43	+1.5
2,759,358	+	fliI	Sama_2294	0.43	-2.9
2,759,358	+	fliI	Sama_2294	0.43	-2.6
2,759,358	+	fliI	Sama_2294	0.43	-2.4
2,759,359	-	fliI	Sama_2294	0.43	-2.8
2,759,359	-	fliI	Sama_2294	0.43	-2.9
2,759,359	-	fliI	Sama_2294	0.43	-2.2
2,759,359	-	fliI	Sama_2294	0.43	-1.7
2,759,378	+	fliI	Sama_2294	0.45	-0.7
2,759,395	-	fliI	Sama_2294	0.46	-2.4
2,759,497	-	fliI	Sama_2294	0.54	-3.4
2,759,592	+	fliI	Sama_2294	0.61	-2.4
2,759,753	-	fliI	Sama_2294	0.73	-3.4
2,759,803	+	fliI	Sama_2294	0.77	-3.0
2,759,804	-	fliI	Sama_2294	0.77	-1.8
2,759,804	-	fliI	Sama_2294	0.77	-1.4
2,759,878	+	fliI	Sama_2294	0.82	-3.1
2,759,879	-	fliI	Sama_2294	0.82	-1.5
2,759,879	-	fliI	Sama_2294	0.82	+0.1
2,759,879	-	fliI	Sama_2294	0.82	-2.5
2,759,879	-	fliI	Sama_2294	0.82	-0.9
2,759,879	-	fliI	Sama_2294	0.82	-1.7
2,759,900	+	fliI	Sama_2294	0.84	-2.1
2,759,901	-	fliI	Sama_2294	0.84	-2.9
2,759,901	-	fliI	Sama_2294	0.84	-2.2
2,759,901	-	fliI	Sama_2294	0.84	-0.7
2,759,937	+	fliI	Sama_2294	0.87	-1.9
2,760,088	-				-2.9
2,760,112	+				-1.4
2,760,113	-				-0.3
2,760,113	-				-2.1
2,760,113	-				-1.1
2,760,197	+	fliH	Sama_2295	0.12	-2.5
2,760,197	+	fliH	Sama_2295	0.12	-0.4
2,760,197	+	fliH	Sama_2295	0.12	-3.1
2,760,198	-	fliH	Sama_2295	0.12	-1.2
2,760,249	-	fliH	Sama_2295	0.18	-0.9
2,760,249	-	fliH	Sama_2295	0.18	-0.5
2,760,278	-	fliH	Sama_2295	0.21	-1.7
2,760,356	-	fliH	Sama_2295	0.30	-2.4
2,760,378	+	fliH	Sama_2295	0.32	-2.2
2,760,378	+	fliH	Sama_2295	0.32	-1.5
2,760,379	-	fliH	Sama_2295	0.32	-3.1
2,760,379	-	fliH	Sama_2295	0.32	-1.7
2,760,480	-	fliH	Sama_2295	0.44	-2.5
2,760,480	-	fliH	Sama_2295	0.44	-2.2
2,760,713	+	fliH	Sama_2295	0.69	-1.4
2,760,714	-	fliH	Sama_2295	0.70	-2.5
2,760,801	-	fliH	Sama_2295	0.79	-3.3
2,760,801	-	fliH	Sama_2295	0.79	-3.4
2,760,959	+				-0.8