Strain Fitness in Shewanella amazonensis SB2B around Sama_2292

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,755,442	-	fliM	Sama_2290	0.67	+0.1
2,755,477	+	fliM	Sama_2290	0.71	-1.7
2,755,505	-	fliM	Sama_2290	0.73	-0.7
2,755,512	+	fliM	Sama_2290	0.74	-2.4
2,755,513	-	fliM	Sama_2290	0.74	-1.8
2,755,513	-	fliM	Sama_2290	0.74	-2.3
2,755,513	-	fliM	Sama_2290	0.74	-3.4
2,755,544	-	fliM	Sama_2290	0.77	-0.7
2,755,573	+	fliM	Sama_2290	0.80	-1.7
2,755,586	+	fliM	Sama_2290	0.81	-2.1
2,755,587	-	fliM	Sama_2290	0.81	-1.8
2,755,587	-	fliM	Sama_2290	0.81	-3.2
2,755,587	-	fliM	Sama_2290	0.81	-2.1
2,755,587	-	fliM	Sama_2290	0.81	-1.2
2,755,762	+				-3.5
2,755,766	+				-0.4
2,755,766	+				-0.7
2,755,766	-				-1.8
2,755,800	-				+2.1
2,755,805	+				-3.4
2,755,806	-				+0.8
2,755,806	-				+0.6
2,755,806	-				+2.2
2,755,818	-				-0.7
2,755,818	-				+1.4
2,755,885	-	fliL	Sama_2291	0.13	-2.2
2,755,885	-	fliL	Sama_2291	0.13	-0.7
2,755,885	-	fliL	Sama_2291	0.13	-2.4
2,755,888	-	fliL	Sama_2291	0.14	-1.8
2,755,892	-	fliL	Sama_2291	0.14	-2.4
2,755,892	-	fliL	Sama_2291	0.14	-2.1
2,755,892	-	fliL	Sama_2291	0.14	-3.1
2,755,916	-	fliL	Sama_2291	0.19	+0.6
2,755,916	-	fliL	Sama_2291	0.19	-2.2
2,755,916	-	fliL	Sama_2291	0.19	-1.9
2,756,014	-	fliL	Sama_2291	0.38	-0.9
2,756,014	-	fliL	Sama_2291	0.38	-1.4
2,756,124	-	fliL	Sama_2291	0.58	-3.2
2,756,124	-	fliL	Sama_2291	0.58	-1.5
2,756,124	-	fliL	Sama_2291	0.58	-0.7
2,756,249	-	fliL	Sama_2291	0.82	-0.4
2,756,293	-				-2.5
2,756,293	-				+0.1
2,756,293	-				+0.8
2,756,293	-				+0.1
2,756,311	-				-1.4
2,756,324	-				-2.0
2,756,324	-				-3.0
2,756,404	-				+1.0
2,756,404	-				-0.1
2,756,404	-				-0.9
2,756,404	-				-2.4
2,756,416	-				+1.3
2,756,418	-				+3.2
2,756,418	-				+0.7
2,756,418	-				-0.9
2,756,418	-				+0.5
2,756,418	-				+0.6
2,756,418	-				-2.5
2,756,423	-				+1.3
2,756,423	-				-1.2
2,756,431	-				-0.5
2,756,437	-				-3.2
2,756,437	-				-0.7
2,756,437	-				-3.9
2,756,437	-				-1.9
2,756,440	-				-2.6
2,756,440	-				-2.1
2,756,440	-				-2.2
2,756,445	-				-3.3
2,756,445	-				-2.1
2,756,445	-				-2.4
2,756,580	-				-1.9
2,756,652	-		Sama_2292	0.13	+0.6
2,756,652	-		Sama_2292	0.13	-0.9
2,756,708	+		Sama_2292	0.16	-1.4
2,756,771	+		Sama_2292	0.19	-2.7
2,756,771	+		Sama_2292	0.19	-3.9
2,756,772	-		Sama_2292	0.19	-1.7
2,756,794	+		Sama_2292	0.20	-2.1
2,756,795	-		Sama_2292	0.21	-2.1
2,756,803	+		Sama_2292	0.21	-0.9
2,756,804	-		Sama_2292	0.21	-1.2
2,756,867	-		Sama_2292	0.25	-1.5
2,756,933	-		Sama_2292	0.28	-2.1
2,756,951	+		Sama_2292	0.29	-2.6
2,756,951	+		Sama_2292	0.29	-1.4
2,756,952	-		Sama_2292	0.29	-1.5
2,756,975	+		Sama_2292	0.31	-2.1
2,756,975	+		Sama_2292	0.31	-0.7
2,756,975	+		Sama_2292	0.31	-1.2
2,756,975	+		Sama_2292	0.31	-1.2
2,756,975	+		Sama_2292	0.31	-2.1
2,756,976	-		Sama_2292	0.31	+0.1
2,756,976	-		Sama_2292	0.31	-0.7
2,756,976	-		Sama_2292	0.31	-1.5
2,756,976	-		Sama_2292	0.31	-2.5
2,756,995	+		Sama_2292	0.32	-0.9
2,757,114	-		Sama_2292	0.38	-2.6
2,757,160	+		Sama_2292	0.41	+0.6
2,757,160	+		Sama_2292	0.41	-1.2
2,757,215	-		Sama_2292	0.44	-2.2
2,757,317	-		Sama_2292	0.50	-2.6
2,757,329	+		Sama_2292	0.51	+0.1
2,757,330	-		Sama_2292	0.51	-1.2
2,757,330	-		Sama_2292	0.51	-3.5
2,757,421	+		Sama_2292	0.56	-2.4
2,757,563	-		Sama_2292	0.64	-2.7
2,757,644	-		Sama_2292	0.68	-2.4
2,757,644	-		Sama_2292	0.68	-3.3
2,757,644	-		Sama_2292	0.68	-2.4
2,757,646	+		Sama_2292	0.68	-2.4
2,757,646	+		Sama_2292	0.68	-1.9
2,757,647	-		Sama_2292	0.68	-2.1
2,757,647	-		Sama_2292	0.68	-0.7
2,757,671	-		Sama_2292	0.70	-3.1
2,757,917	+		Sama_2292	0.84	-1.9
2,758,066	+				-1.9
2,758,233	+				-2.7
2,758,233	+				-2.3
2,758,233	+				-2.3
2,758,233	+				-0.9
2,758,233	+				-1.5
2,758,234	-				-0.5
2,758,234	-				+1.1
2,758,234	-				+0.9
2,758,240	-				-1.1
2,758,286	+				+0.5
2,758,319	+				-0.3
2,758,328	+				+2.3
2,758,328	+				-1.9
2,758,329	-				-0.8
2,758,329	-				+0.4
2,758,429	-		Sama_2293	0.23	-0.9
2,758,534	+		Sama_2293	0.46	-2.7
2,758,534	+		Sama_2293	0.46	-3.4
2,758,534	+		Sama_2293	0.46	-1.2
2,758,557	+		Sama_2293	0.51	-1.4
2,758,557	+		Sama_2293	0.51	-1.8
2,758,577	+		Sama_2293	0.56	-1.8
2,758,578	-		Sama_2293	0.56	-2.1
2,758,578	-		Sama_2293	0.56	-2.1
2,758,580	+		Sama_2293	0.57	-0.7
2,758,581	-		Sama_2293	0.57	-2.6
2,758,626	+		Sama_2293	0.67	-1.2
2,758,626	+		Sama_2293	0.67	-1.8
2,758,626	+		Sama_2293	0.67	-2.4
2,758,626	+		Sama_2293	0.67	-2.1
2,758,627	-		Sama_2293	0.67	-2.5
2,758,627	-		Sama_2293	0.67	-1.7
2,758,627	-		Sama_2293	0.67	-3.1
2,758,627	-		Sama_2293	0.67	-1.9
2,758,627	-		Sama_2293	0.67	-0.4
2,758,627	-		Sama_2293	0.67	-3.7
2,758,628	+		Sama_2293	0.67	-1.7
2,758,628	+		Sama_2293	0.67	-2.4
2,758,628	+		Sama_2293	0.67	-3.2
2,758,629	-		Sama_2293	0.68	-0.7
2,758,779	-				-2.7
2,758,785	+				-2.9
2,758,786	-				-0.4
2,758,786	-				-0.2
2,758,786	-				-0.7
2,758,902	+				-0.7
2,758,902	+				-0.4
2,758,926	-	fliI	Sama_2294	0.11	-2.3
2,758,961	+	fliI	Sama_2294	0.14	-3.6
2,758,970	+	fliI	Sama_2294	0.14	-3.5
2,758,970	+	fliI	Sama_2294	0.14	-0.7
2,758,971	-	fliI	Sama_2294	0.14	-2.1
2,759,101	+	fliI	Sama_2294	0.24	-1.2
2,759,101	+	fliI	Sama_2294	0.24	-0.9
2,759,101	+	fliI	Sama_2294	0.24	-0.7
2,759,101	+	fliI	Sama_2294	0.24	-1.9
2,759,101	+	fliI	Sama_2294	0.24	-2.9
2,759,101	+	fliI	Sama_2294	0.24	+0.1
2,759,101	+	fliI	Sama_2294	0.24	-0.7
2,759,101	+	fliI	Sama_2294	0.24	-0.9
2,759,102	-	fliI	Sama_2294	0.24	-3.7
2,759,102	-	fliI	Sama_2294	0.24	-3.1
2,759,102	-	fliI	Sama_2294	0.24	-0.9
2,759,170	+	fliI	Sama_2294	0.29	-2.1
2,759,171	-	fliI	Sama_2294	0.29	-1.7
2,759,171	-	fliI	Sama_2294	0.29	-3.4
2,759,171	-	fliI	Sama_2294	0.29	-0.7