Strain Fitness in Shewanella amazonensis SB2B around Sama_2287

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,752,282	-	fliR	Sama_2285	0.15	-2.2
2,752,314	+	fliR	Sama_2285	0.19	-1.5
2,752,315	-	fliR	Sama_2285	0.19	-0.4
2,752,315	-	fliR	Sama_2285	0.19	-1.9
2,752,319	-	fliR	Sama_2285	0.20	-3.4
2,752,319	-	fliR	Sama_2285	0.20	-0.7
2,752,319	-	fliR	Sama_2285	0.20	-1.8
2,752,418	+	fliR	Sama_2285	0.32	-3.5
2,752,418	+	fliR	Sama_2285	0.32	-1.7
2,752,419	-	fliR	Sama_2285	0.33	-3.2
2,752,419	-	fliR	Sama_2285	0.33	-2.4
2,752,419	-	fliR	Sama_2285	0.33	-0.9
2,752,419	-	fliR	Sama_2285	0.33	-1.5
2,752,419	-	fliR	Sama_2285	0.33	-3.9
2,752,446	-	fliR	Sama_2285	0.36	-1.4
2,752,446	-	fliR	Sama_2285	0.36	-2.1
2,752,446	-	fliR	Sama_2285	0.36	-0.9
2,752,446	-	fliR	Sama_2285	0.36	-3.3
2,752,450	-	fliR	Sama_2285	0.37	-2.7
2,752,471	-	fliR	Sama_2285	0.39	-0.4
2,752,471	-	fliR	Sama_2285	0.39	+0.6
2,752,485	+	fliR	Sama_2285	0.41	-2.9
2,752,780	+	fliR	Sama_2285	0.78	-4.4
2,752,781	-	fliR	Sama_2285	0.78	-0.9
2,752,845	+	fliR	Sama_2285	0.87	-2.4
2,752,845	+	fliR	Sama_2285	0.87	+0.1
2,752,846	-	fliR	Sama_2285	0.87	-2.7
2,752,846	-	fliR	Sama_2285	0.87	-3.2
2,752,872	+				-1.9
2,752,873	-				-0.4
2,752,873	-				-0.7
2,752,905	+				-1.2
2,752,905	+				-0.7
2,752,905	+				-1.2
2,752,905	+				-0.9
2,752,905	+				-0.7
2,752,906	-				-3.4
2,752,906	-				+0.1
2,752,908	-				-0.5
2,752,908	-				+0.1
2,752,918	-				-0.9
2,752,918	-				-3.1
2,752,918	-				-2.1
2,752,960	-				+0.6
2,753,147	+		Sama_2286	0.73	-2.5
2,753,148	-		Sama_2286	0.73	-3.4
2,753,148	-		Sama_2286	0.73	+7.0
2,753,148	-		Sama_2286	0.73	-0.7
2,753,166	+		Sama_2286	0.80	-2.3
2,753,166	+		Sama_2286	0.80	-1.9
2,753,167	-		Sama_2286	0.80	-1.8
2,753,167	-		Sama_2286	0.80	-2.6
2,753,167	-		Sama_2286	0.80	-0.7
2,753,167	-		Sama_2286	0.80	-0.9
2,753,167	-		Sama_2286	0.80	-0.5
2,753,169	+		Sama_2286	0.81	-2.2
2,753,195	+				-1.8
2,753,195	+				-0.9
2,753,196	-				-2.2
2,753,196	-				-1.5
2,753,231	-				+1.2
2,753,401	+	fliP	Sama_2287	0.23	-3.4
2,753,402	-	fliP	Sama_2287	0.24	-1.5
2,753,453	-	fliP	Sama_2287	0.30	-2.5
2,753,453	-	fliP	Sama_2287	0.30	-3.4
2,753,551	+	fliP	Sama_2287	0.43	-0.4
2,753,551	+	fliP	Sama_2287	0.43	-0.4
2,753,551	+	fliP	Sama_2287	0.43	-1.5
2,753,552	-	fliP	Sama_2287	0.44	-1.4
2,753,552	-	fliP	Sama_2287	0.44	-2.2
2,753,552	-	fliP	Sama_2287	0.44	-0.9
2,753,552	-	fliP	Sama_2287	0.44	-2.7
2,753,552	-	fliP	Sama_2287	0.44	-2.4
2,753,552	-	fliP	Sama_2287	0.44	-3.2
2,753,552	-	fliP	Sama_2287	0.44	-1.5
2,753,573	-	fliP	Sama_2287	0.46	-1.5
2,753,614	+	fliP	Sama_2287	0.52	-1.7
2,753,615	-	fliP	Sama_2287	0.52	-2.1
2,753,615	-	fliP	Sama_2287	0.52	-3.1
2,753,615	-	fliP	Sama_2287	0.52	-1.7
2,753,616	+	fliP	Sama_2287	0.52	-0.8
2,753,617	-	fliP	Sama_2287	0.52	-1.9
2,753,617	-	fliP	Sama_2287	0.52	-0.7
2,753,617	-	fliP	Sama_2287	0.52	-1.8
2,753,617	-	fliP	Sama_2287	0.52	-2.9
2,753,678	-	fliP	Sama_2287	0.60	+0.1
2,753,759	+	fliP	Sama_2287	0.71	-2.3
2,753,759	+	fliP	Sama_2287	0.71	-1.4
2,753,760	-	fliP	Sama_2287	0.71	-2.3
2,753,760	-	fliP	Sama_2287	0.71	-4.0
2,753,788	+	fliP	Sama_2287	0.75	-2.3
2,753,961	-				-1.4
2,754,048	+		Sama_2288	0.21	-1.2
2,754,048	+		Sama_2288	0.21	-1.4
2,754,052	+		Sama_2288	0.22	-2.8
2,754,052	+		Sama_2288	0.22	-1.4
2,754,052	+		Sama_2288	0.22	-2.9
2,754,052	+		Sama_2288	0.22	-0.7
2,754,053	-		Sama_2288	0.22	-1.4
2,754,053	-		Sama_2288	0.22	-1.5
2,754,053	-		Sama_2288	0.22	-1.5
2,754,053	-		Sama_2288	0.22	-3.3
2,754,053	-		Sama_2288	0.22	-2.9
2,754,053	-		Sama_2288	0.22	-1.4
2,754,089	+		Sama_2288	0.31	-2.2
2,754,089	+		Sama_2288	0.31	-2.3
2,754,090	-		Sama_2288	0.32	-2.9
2,754,206	+		Sama_2288	0.63	-1.7
2,754,206	+		Sama_2288	0.63	-1.9
2,754,206	+		Sama_2288	0.63	-1.2
2,754,206	+		Sama_2288	0.63	-1.2
2,754,207	-		Sama_2288	0.63	-0.9
2,754,207	-		Sama_2288	0.63	-3.1
2,754,207	-		Sama_2288	0.63	-2.2
2,754,207	-		Sama_2288	0.63	-2.2
2,754,207	-		Sama_2288	0.63	-0.7
2,754,207	-		Sama_2288	0.63	-2.4
2,754,236	-		Sama_2288	0.71	-0.4
2,754,331	+				-3.0
2,754,338	-				-1.8
2,754,365	-				-0.9
2,754,464	+	fliN	Sama_2289	0.27	-0.9
2,754,558	-	fliN	Sama_2289	0.52	-0.2
2,754,558	-	fliN	Sama_2289	0.52	-1.8
2,754,558	-	fliN	Sama_2289	0.52	-0.7
2,754,559	+	fliN	Sama_2289	0.52	-0.7
2,754,559	+	fliN	Sama_2289	0.52	-2.4
2,754,560	-	fliN	Sama_2289	0.53	-2.9
2,754,560	-	fliN	Sama_2289	0.53	-1.4
2,754,560	-	fliN	Sama_2289	0.53	-2.3
2,754,560	-	fliN	Sama_2289	0.53	-2.4
2,754,560	-	fliN	Sama_2289	0.53	-1.2
2,754,560	-	fliN	Sama_2289	0.53	-2.4
2,754,560	-	fliN	Sama_2289	0.53	-3.2
2,754,578	+	fliN	Sama_2289	0.57	-0.9
2,754,579	-	fliN	Sama_2289	0.58	-3.3
2,754,732	-				-1.5
2,754,743	-				-1.7
2,754,764	-				-0.9
2,754,764	-				-0.5
2,754,764	-				-1.3
2,754,764	-				-0.9
2,754,798	-				-1.8
2,754,840	-				+0.1
2,754,886	-	fliM	Sama_2290	0.13	-3.2
2,754,918	+	fliM	Sama_2290	0.16	-0.4
2,754,918	+	fliM	Sama_2290	0.16	-2.6
2,754,919	-	fliM	Sama_2290	0.17	-2.1