Strain Fitness in Shewanella amazonensis SB2B around Sama_2285

Experiment: Motility assay, center cut sample 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Motility assay, center cut sample 2
2,751,182	+	flhB	Sama_2284	0.14	-2.3
2,751,182	+	flhB	Sama_2284	0.14	-2.4
2,751,182	+	flhB	Sama_2284	0.14	-3.6
2,751,260	+	flhB	Sama_2284	0.21	-1.4
2,751,323	-	flhB	Sama_2284	0.26	-1.5
2,751,323	-	flhB	Sama_2284	0.26	-2.2
2,751,361	-	flhB	Sama_2284	0.29	-1.7
2,751,361	-	flhB	Sama_2284	0.29	-2.6
2,751,592	-	flhB	Sama_2284	0.50	-3.4
2,751,636	+	flhB	Sama_2284	0.54	-3.4
2,751,756	-	flhB	Sama_2284	0.64	-1.6
2,751,831	+	flhB	Sama_2284	0.71	-2.6
2,751,831	+	flhB	Sama_2284	0.71	-2.8
2,751,831	+	flhB	Sama_2284	0.71	-2.4
2,751,832	-	flhB	Sama_2284	0.71	-1.4
2,751,832	-	flhB	Sama_2284	0.71	-3.2
2,751,832	-	flhB	Sama_2284	0.71	-2.4
2,751,832	-	flhB	Sama_2284	0.71	-0.4
2,751,832	-	flhB	Sama_2284	0.71	+0.6
2,751,921	-	flhB	Sama_2284	0.79	-2.4
2,751,921	-	flhB	Sama_2284	0.79	-2.7
2,751,921	-	flhB	Sama_2284	0.79	-1.5
2,752,130	+				-1.4
2,752,146	-				-4.1
2,752,282	-	fliR	Sama_2285	0.15	-2.2
2,752,314	+	fliR	Sama_2285	0.19	-1.5
2,752,315	-	fliR	Sama_2285	0.19	-0.4
2,752,315	-	fliR	Sama_2285	0.19	-1.9
2,752,319	-	fliR	Sama_2285	0.20	-3.4
2,752,319	-	fliR	Sama_2285	0.20	-0.7
2,752,319	-	fliR	Sama_2285	0.20	-1.8
2,752,418	+	fliR	Sama_2285	0.32	-3.5
2,752,418	+	fliR	Sama_2285	0.32	-1.7
2,752,419	-	fliR	Sama_2285	0.33	-3.2
2,752,419	-	fliR	Sama_2285	0.33	-2.4
2,752,419	-	fliR	Sama_2285	0.33	-0.9
2,752,419	-	fliR	Sama_2285	0.33	-1.5
2,752,419	-	fliR	Sama_2285	0.33	-3.9
2,752,446	-	fliR	Sama_2285	0.36	-1.4
2,752,446	-	fliR	Sama_2285	0.36	-2.1
2,752,446	-	fliR	Sama_2285	0.36	-0.9
2,752,446	-	fliR	Sama_2285	0.36	-3.3
2,752,450	-	fliR	Sama_2285	0.37	-2.7
2,752,471	-	fliR	Sama_2285	0.39	-0.4
2,752,471	-	fliR	Sama_2285	0.39	+0.6
2,752,485	+	fliR	Sama_2285	0.41	-2.9
2,752,780	+	fliR	Sama_2285	0.78	-4.4
2,752,781	-	fliR	Sama_2285	0.78	-0.9
2,752,845	+	fliR	Sama_2285	0.87	-2.4
2,752,845	+	fliR	Sama_2285	0.87	+0.1
2,752,846	-	fliR	Sama_2285	0.87	-2.7
2,752,846	-	fliR	Sama_2285	0.87	-3.2
2,752,872	+				-1.9
2,752,873	-				-0.4
2,752,873	-				-0.7
2,752,905	+				-1.2
2,752,905	+				-0.7
2,752,905	+				-1.2
2,752,905	+				-0.9
2,752,905	+				-0.7
2,752,906	-				-3.4
2,752,906	-				+0.1
2,752,908	-				-0.5
2,752,908	-				+0.1
2,752,918	-				-0.9
2,752,918	-				-3.1
2,752,918	-				-2.1
2,752,960	-				+0.6
2,753,147	+		Sama_2286	0.73	-2.5
2,753,148	-		Sama_2286	0.73	-3.4
2,753,148	-		Sama_2286	0.73	+7.0
2,753,148	-		Sama_2286	0.73	-0.7
2,753,166	+		Sama_2286	0.80	-2.3
2,753,166	+		Sama_2286	0.80	-1.9
2,753,167	-		Sama_2286	0.80	-1.8
2,753,167	-		Sama_2286	0.80	-2.6
2,753,167	-		Sama_2286	0.80	-0.7
2,753,167	-		Sama_2286	0.80	-0.9
2,753,167	-		Sama_2286	0.80	-0.5
2,753,169	+		Sama_2286	0.81	-2.2
2,753,195	+				-1.8
2,753,195	+				-0.9
2,753,196	-				-2.2
2,753,196	-				-1.5
2,753,231	-				+1.2
2,753,401	+	fliP	Sama_2287	0.23	-3.4
2,753,402	-	fliP	Sama_2287	0.24	-1.5
2,753,453	-	fliP	Sama_2287	0.30	-2.5
2,753,453	-	fliP	Sama_2287	0.30	-3.4
2,753,551	+	fliP	Sama_2287	0.43	-0.4
2,753,551	+	fliP	Sama_2287	0.43	-0.4
2,753,551	+	fliP	Sama_2287	0.43	-1.5
2,753,552	-	fliP	Sama_2287	0.44	-1.4
2,753,552	-	fliP	Sama_2287	0.44	-2.2
2,753,552	-	fliP	Sama_2287	0.44	-0.9
2,753,552	-	fliP	Sama_2287	0.44	-2.7
2,753,552	-	fliP	Sama_2287	0.44	-2.4
2,753,552	-	fliP	Sama_2287	0.44	-3.2
2,753,552	-	fliP	Sama_2287	0.44	-1.5
2,753,573	-	fliP	Sama_2287	0.46	-1.5
2,753,614	+	fliP	Sama_2287	0.52	-1.7
2,753,615	-	fliP	Sama_2287	0.52	-2.1
2,753,615	-	fliP	Sama_2287	0.52	-3.1
2,753,615	-	fliP	Sama_2287	0.52	-1.7
2,753,616	+	fliP	Sama_2287	0.52	-0.8
2,753,617	-	fliP	Sama_2287	0.52	-1.9
2,753,617	-	fliP	Sama_2287	0.52	-0.7
2,753,617	-	fliP	Sama_2287	0.52	-1.8
2,753,617	-	fliP	Sama_2287	0.52	-2.9
2,753,678	-	fliP	Sama_2287	0.60	+0.1
2,753,759	+	fliP	Sama_2287	0.71	-2.3
2,753,759	+	fliP	Sama_2287	0.71	-1.4
2,753,760	-	fliP	Sama_2287	0.71	-2.3
2,753,760	-	fliP	Sama_2287	0.71	-4.0
2,753,788	+	fliP	Sama_2287	0.75	-2.3